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Cmc02g0058061 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0058061
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr02:23747315..23747773
RNA-Seq ExpressionCmc02g0058061
SyntenyCmc02g0058061
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004601 - peroxidase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057859.1 pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]1.7e-81100Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV
        PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV

TYJ98541.1 pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]1.7e-81100Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV
        PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV

TYK10423.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-6991.61Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQI +RDED+SKT FRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT
        PFGLTN P TFQ LMN+VFRPYLRKFLLVFFDDILVYS  + T
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT

TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-6991.61Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQI +RDED+SKT FRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT
        PFGLTN P TFQ LMN+VFRPYLRKFLLVFFDDILVYS  + T
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT

TYK23724.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-6991.61Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQI +RDED+SKT FRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT
        PFGLTN P TFQ LMN+VFRPYLRKFLLVFFDDILVYS  + T
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT

TrEMBL top hitse value%identityAlignment
A0A5A7UWA7 Pleiotropic drug resistance protein 1-like8.1e-82100Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV
        PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV

A0A5D3BD16 Ty3/gypsy retrotransposon protein4.6e-6991.61Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQI +RDED+SKT FRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT
        PFGLTN P TFQ LMN+VFRPYLRKFLLVFFDDILVYS  + T
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT

A0A5D3BIM8 Pleiotropic drug resistance protein 1-like8.1e-82100Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV
        PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV

A0A5D3CEX8 Ty3/gypsy retrotransposon protein4.6e-6991.61Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQI +RDED+SKT FRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT
        PFGLTN P TFQ LMN+VFRPYLRKFLLVFFDDILVYS  + T
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT

A0A5D3DRT3 Ty3/gypsy retrotransposon protein4.6e-6991.61Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQI +RDED+SKT FRTHEGHYEFLVM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT
        PFGLTN P TFQ LMN+VFRPYLRKFLLVFFDDILVYS  + T
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVT

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.3e-3550.68Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGG-----WRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHY
        ML  GIIR S SP++SP+ +V KK        +R  +DYR LN  TV D+ PIP +DE+L +L   + F+ IDL  G+HQI M  E VSKT F T  GHY
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGG-----WRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHY

Query:  EFLVMPFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTI
        E+L MPFGL N P TFQ  MN + RP L K  LV+ DDI+V+S ++
Subjt:  EFLVMPFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTI

P20825 Retrovirus-related Pol polyprotein from transposon 2971.4e-3548.63Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGG-----WRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHY
        ML  G+IR S SP++SP  +V KK        +R  +DYR LN  T+PD++PIP +DE+L +L     F+ IDL  G+HQI M +E +SKT F T  GHY
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGG-----WRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHY

Query:  EFLVMPFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTI
        E+L MPFGL N P TFQ  MN + RP L K  LV+ DDI+++S ++
Subjt:  EFLVMPFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYSVTI

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.1e-3453.62Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        +L +  I PS SP SSPV+LV KKDG +R CVDYR LN+AT+ D FP+P ID LL  +  A IF+ +DL SGYHQI M  +D  KT F T  G YE+ VM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYS
        PFGL N P TF   M   FR    +F+ V+ DDIL++S
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYS

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.2e-3144.76Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKK-----DGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHY
        +L  GIIRPS SP++SP+ +V KK     +  +R  VD++ LN  T+PD +PIP I+  L  L  A  F+ +DL SG+HQI M++ D+ KT F T  G Y
Subjt:  MLASGIIRPSTSPFSSPVILVKKK-----DGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHY

Query:  EFLVMPFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYS
        EFL +PFGL N P  FQ +++ + R ++ K   V+ DDI+V+S
Subjt:  EFLVMPFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYS

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.1e-3453.62Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM
        +L +  I PS SP SSPV+LV KKDG +R CVDYR LN+AT+ D FP+P ID LL  +  A IF+ +DL SGYHQI M  +D  KT F T  G YE+ VM
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVM

Query:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYS
        PFGL N P TF   M   FR    +F+ V+ DDIL++S
Subjt:  PFGLTNVPVTFQVLMNKVFRPYLRKFLLVFFDDILVYS

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein1.2e-0571.43Show/hide
Query:  MLASGIIRPSTSPFSSPVILVKKKDGGW
        ML + II+PS SP+SSPV+LV+KKDGGW
Subjt:  MLASGIIRPSTSPFSSPVILVKKKDGGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGCTTCGGGAATTATAAGACCTAGCACCAGCCCGTTTTCCAGTCCGGTTATCTTGGTAAAAAAGAAGGATGGGGGATGGCGGTTTTGCGTCGACTATCGCGCTTT
AAACCGAGCAACTGTACCGGATAAGTTCCCTATTCCCATGATCGATGAGCTGTTGGATGAGCTAAGTGGAGCGAGTATCTTCTCTAAAATAGACTTGAAATCCGGGTACC
ATCAAATCTGGATGCGGGATGAAGATGTAAGCAAGACAACTTTCAGAACACACGAGGGTCATTACGAGTTCCTAGTCATGCCCTTCGGCCTCACCAATGTACCCGTGACA
TTTCAAGTACTGATGAATAAGGTTTTTCGACCTTATTTACGTAAATTCTTGCTGGTATTTTTTGACGACATTCTGGTGTACAGTGTCACAATCGTAACTTCTCGACACGA
TTGTGCGGCACTTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGGCTTCGGGAATTATAAGACCTAGCACCAGCCCGTTTTCCAGTCCGGTTATCTTGGTAAAAAAGAAGGATGGGGGATGGCGGTTTTGCGTCGACTATCGCGCTTT
AAACCGAGCAACTGTACCGGATAAGTTCCCTATTCCCATGATCGATGAGCTGTTGGATGAGCTAAGTGGAGCGAGTATCTTCTCTAAAATAGACTTGAAATCCGGGTACC
ATCAAATCTGGATGCGGGATGAAGATGTAAGCAAGACAACTTTCAGAACACACGAGGGTCATTACGAGTTCCTAGTCATGCCCTTCGGCCTCACCAATGTACCCGTGACA
TTTCAAGTACTGATGAATAAGGTTTTTCGACCTTATTTACGTAAATTCTTGCTGGTATTTTTTGACGACATTCTGGTGTACAGTGTCACAATCGTAACTTCTCGACACGA
TTGTGCGGCACTTGTTTAG
Protein sequenceShow/hide protein sequence
MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSGASIFSKIDLKSGYHQIWMRDEDVSKTTFRTHEGHYEFLVMPFGLTNVPVT
FQVLMNKVFRPYLRKFLLVFFDDILVYSVTIVTSRHDCAALV