; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0058071 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0058071
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr02:23749192..23749962
RNA-Seq ExpressionCmc02g0058071
SyntenyCmc02g0058071
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-14296.08Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLTSKQA WQEFLAEFDFEFEHKKGS+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNL KAGKTRQFWVEEDLLVTKGNRLYVPRAG L+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIP T
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

KAA0045218.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-14296.08Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGS+FVVK DNSATCHFFTQPKLTSKQA WQEFLAEFDFEFEHKKGS+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNL KAGKTRQFWVEEDLLVTKGNRLYVPRAGDL+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIP T
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

KAA0052269.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-14598.04Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQA WQEFL EFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDL+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-14296.08Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLTSKQA WQEFLAEFDFEFEHKKGS+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNL KAGKTRQFWVEEDLLVTKGNRLYVPRAG L+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIP T
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-14598.04Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLTSKQA WQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDL+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

TrEMBL top hitse value%identityAlignment
A0A5A7TQR5 Reverse transcriptase8.1e-14396.08Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGS+FVVK DNSATCHFFTQPKLTSKQA WQEFLAEFDFEFEHKKGS+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNL KAGKTRQFWVEEDLLVTKGNRLYVPRAGDL+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIP T
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

A0A5A7UFL8 Reverse transcriptase1.3e-14598.04Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQA WQEFL EFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDL+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

A0A5D3BQE4 Reverse transcriptase1.3e-14598.04Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLTSKQA WQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDL+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

A0A5D3BRZ6 Reverse transcriptase1.1e-14296.08Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLTSKQA WQEFLAEFDFEFEHKKGS+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNL KAGKTRQFWVEEDLLVTKGNRLYVPRAG L+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIP T
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

A0A5D3C4R1 Reverse transcriptase1.1e-14296.08Show/hide
Query:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE
        MLAVV+CLRAWRQYLLGS+FVVKTDNSATCHFFTQPKLTSKQA WQEFLAEFDFEFEHKKGS+NQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLRE
Subjt:  MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLRE

Query:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
        FLQKDHAAQNVMNL KAGKTRQFWVEEDLLVTKGNRLYVPRAG L+KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE
Subjt:  FLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVE

Query:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        KVKVAGLLDPLP+PTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIP T
Subjt:  KVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.9e-2829.26Show/hide
Query:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL
        MLA++  L+ WR YL  +   F + TD+       T   +P+   + A WQ FL +F+FE  ++ GS N  ADALSR            E  +I  +  +
Subjt:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL

Query:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM
            I    ++ +      D    N++N           +++ LL+   +++ +P    L + ++ + H+     HPG +    ++ + + W  +R  + 
Subjt:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM

Query:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+   + A+ V++DRFSK A  +P T
Subjt:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

P0CT35 Transposon Tf2-2 polyprotein4.9e-2829.26Show/hide
Query:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL
        MLA++  L+ WR YL  +   F + TD+       T   +P+   + A WQ FL +F+FE  ++ GS N  ADALSR            E  +I  +  +
Subjt:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL

Query:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM
            I    ++ +      D    N++N           +++ LL+   +++ +P    L + ++ + H+     HPG +    ++ + + W  +R  + 
Subjt:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM

Query:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+   + A+ V++DRFSK A  +P T
Subjt:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

P0CT36 Transposon Tf2-3 polyprotein4.9e-2829.26Show/hide
Query:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL
        MLA++  L+ WR YL  +   F + TD+       T   +P+   + A WQ FL +F+FE  ++ GS N  ADALSR            E  +I  +  +
Subjt:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL

Query:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM
            I    ++ +      D    N++N           +++ LL+   +++ +P    L + ++ + H+     HPG +    ++ + + W  +R  + 
Subjt:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM

Query:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+   + A+ V++DRFSK A  +P T
Subjt:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

P0CT41 Transposon Tf2-12 polyprotein4.9e-2829.26Show/hide
Query:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL
        MLA++  L+ WR YL  +   F + TD+       T   +P+   + A WQ FL +F+FE  ++ GS N  ADALSR            E  +I  +  +
Subjt:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL

Query:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM
            I    ++ +      D    N++N           +++ LL+   +++ +P    L + ++ + H+     HPG +    ++ + + W  +R  + 
Subjt:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM

Query:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+   + A+ V++DRFSK A  +P T
Subjt:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

Q9UR07 Transposon Tf2-11 polyprotein4.9e-2829.26Show/hide
Query:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL
        MLA++  L+ WR YL  +   F + TD+       T   +P+   + A WQ FL +F+FE  ++ GS N  ADALSR            E  +I  +  +
Subjt:  MLAVVYCLRAWRQYLLGS--TFVVKTDNSATCHFFT---QPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSR----------KQEHAAICLLAHL

Query:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM
            I    ++ +      D    N++N           +++ LL+   +++ +P    L + ++ + H+     HPG +    ++ + + W  +R  + 
Subjt:  RGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVM

Query:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT
        +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+   + A+ V++DRFSK A  +P T
Subjt:  QYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGCAGTAGTATATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGACGTTTGTAGTGAAGACGGATAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAA
GTTGACTTCGAAACAAGCAATATGGCAGGAATTTCTGGCCGAGTTCGACTTTGAATTTGAACACAAGAAGGGGTCGAACAACCAGGCTGCTGATGCCCTAAGTCGAAAAC
AAGAACATGCTGCCATATGCCTATTAGCTCACCTCCGGGGGAGCGAGATTGGCGGGTCGGTTAGAGACACCTTGAGAGAGTTCCTACAGAAGGATCATGCCGCTCAGAAT
GTCATGAATTTAGTGAAGGCGGGCAAAACACGACAGTTTTGGGTCGAGGAAGACTTGTTAGTCACAAAGGGCAATCGACTGTATGTTCCAAGAGCAGGGGACTTAAAGAA
GAAATTGTTGTATGAGTGTCACGACACTCTATGGGCTGGCCACCCCGGATGGCAGCGGACGTACGCCCTGTTGAAGAAGGGCTACTTTTGGCCGAATATGAGAGATGATG
TCATGCAGTACACTAAGACATGTCTCATCTGCCAACAAGACAAAGTAGAGAAAGTGAAGGTTGCTGGACTTCTCGACCCTCTACCGATTCCAACTAGACCTTGGGAGAGT
GTCTCTATGGACTTCATCACCCATCTTCCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCGTTTTTCAAAGTACGCCACCTTCATCCCCACCACCATGTA
G
mRNA sequenceShow/hide mRNA sequence
ATGCTCGCAGTAGTATATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGACGTTTGTAGTGAAGACGGATAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAA
GTTGACTTCGAAACAAGCAATATGGCAGGAATTTCTGGCCGAGTTCGACTTTGAATTTGAACACAAGAAGGGGTCGAACAACCAGGCTGCTGATGCCCTAAGTCGAAAAC
AAGAACATGCTGCCATATGCCTATTAGCTCACCTCCGGGGGAGCGAGATTGGCGGGTCGGTTAGAGACACCTTGAGAGAGTTCCTACAGAAGGATCATGCCGCTCAGAAT
GTCATGAATTTAGTGAAGGCGGGCAAAACACGACAGTTTTGGGTCGAGGAAGACTTGTTAGTCACAAAGGGCAATCGACTGTATGTTCCAAGAGCAGGGGACTTAAAGAA
GAAATTGTTGTATGAGTGTCACGACACTCTATGGGCTGGCCACCCCGGATGGCAGCGGACGTACGCCCTGTTGAAGAAGGGCTACTTTTGGCCGAATATGAGAGATGATG
TCATGCAGTACACTAAGACATGTCTCATCTGCCAACAAGACAAAGTAGAGAAAGTGAAGGTTGCTGGACTTCTCGACCCTCTACCGATTCCAACTAGACCTTGGGAGAGT
GTCTCTATGGACTTCATCACCCATCTTCCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCGTTTTTCAAAGTACGCCACCTTCATCCCCACCACCATGTA
G
Protein sequenceShow/hide protein sequence
MLAVVYCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQAIWQEFLAEFDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQN
VMNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLKKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPIPTRPWES
VSMDFITHLPKVGDFEAILVIIDRFSKYATFIPTTM