; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0058081 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0058081
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr02:23750250..23750954
RNA-Seq ExpressionCmc02g0058081
SyntenyCmc02g0058081
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-12897.01Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER+NFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        +GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

KAA0057857.1 reverse transcriptase [Cucumis melo var. makuwa]9.3e-132100Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-12897.01Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER+NFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        +GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-12897.01Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER+NFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        +GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-12897.44Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER+NFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        +GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

TrEMBL top hitse value%identityAlignment
A0A5A7UT24 Reverse transcriptase4.5e-132100Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

A0A5A7UXR6 Reverse transcriptase1.4e-12897.01Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER+NFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        +GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

A0A5D3BRZ6 Reverse transcriptase1.4e-12897.01Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER+NFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        +GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

A0A5D3C4R1 Reverse transcriptase1.4e-12897.01Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER+NFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        +GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

A0A5D3C9P8 Reverse transcriptase6.1e-12997.44Show/hide
Query:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR
        TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQER+NFLGHVIECGR
Subjt:  TTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGR

Query:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
        +GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Subjt:  VGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.67.3e-4739.22Show/hide
Query:  ELRKQLDELLNAGFIRPAKAPYEAPV-LFQKKKDGS----LRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTT
        E+  Q+ ++LN G IR + +PY +P+ +  KK+D S     R+ IDYR LN++TV +++P+P + ++  +L    YF+ +DL  G++Q+ +      KT 
Subjt:  ELRKQLDELLNAGFIRPAKAPYEAPV-LFQKKKDGS----LRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTT

Query:  CVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVG
          T++G +E+L MPFGL NAPATF   MN      L+K  +VYLDDI+V+ST+++EH   L  VF+KL +  L ++ +KC F ++   FLGHV+    + 
Subjt:  CVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVG

Query:  MEERKIAAIRDWAMPKSVSELRSFLGLANYYR
            KI AI+ + +P    E+++FLGL  YYR
Subjt:  MEERKIAAIRDWAMPKSVSELRSFLGLANYYR

P20825 Retrovirus-related Pol polyprotein from transposon 2975.6e-4739.66Show/hide
Query:  ELRKQLDELLNAGFIRPAKAPYEAPV-LFQKKKDGS----LRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTT
        E+  Q+ E+LN G IR + +PY +P  +  KK D S     R+ IDYR LN++T+ ++YP+P + ++  +L   +YF+ +DL  G++Q+ + E    KT 
Subjt:  ELRKQLDELLNAGFIRPAKAPYEAPV-LFQKKKDGS----LRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTT

Query:  CVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVG
          T+ G +E+L MPFGL NAPATF   MN      L+K  +VYLDDI+++ST++ EH + +Q VF KL +  L ++ +KC F ++  NFLGH++    + 
Subjt:  CVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVG

Query:  MEERKIAAIRDWAMPKSVSELRSFLGLANYYR
            K+ AI  + +P    E+R+FLGL  YYR
Subjt:  MEERKIAAIRDWAMPKSVSELRSFLGLANYYR

P31843 RNA-directed DNA polymerase homolog2.5e-4770.31Show/hide
Query:  SLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKF
        SLR+CIDYRAL K+T++NKYP+P + DLFDRL  A +F+KLDL+SGY+QVRIA+GDEPKTTCVTRYG+FEF VMPFGLTNA ATFC LMN   +EYLD F
Subjt:  SLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKF

Query:  VVVYLDDIVV---YSTTMEEHRDHLQKV
        VVVYLDD+VV   YS ++ EH  HL+ V
Subjt:  VVVYLDDIVV---YSTTMEEHRDHLQKV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.2e-5446.26Show/hide
Query:  ELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRY
        E+ K + +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+  A+ F+ LDL SGY+Q+ +   D  KT  VT  
Subjt:  ELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRY

Query:  GAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVGMEERK
        G +E+ VMPFGL NAP+TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++LK   L VK++KC FA E   FLG+ I   ++   + K
Subjt:  GAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVGMEERK

Query:  IAAIRDWAMPKSVSELRSFLGLANYYR
         AAIRD+  PK+V + + FLG+ NYYR
Subjt:  IAAIRDWAMPKSVSELRSFLGLANYYR

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.2e-5446.26Show/hide
Query:  ELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRY
        E+ K + +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+  A+ F+ LDL SGY+Q+ +   D  KT  VT  
Subjt:  ELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRY

Query:  GAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVGMEERK
        G +E+ VMPFGL NAP+TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++LK   L VK++KC FA E   FLG+ I   ++   + K
Subjt:  GAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVGMEERK

Query:  IAAIRDWAMPKSVSELRSFLGLANYYR
         AAIRD+  PK+V + + FLG+ NYYR
Subjt:  IAAIRDWAMPKSVSELRSFLGLANYYR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAGTTACTGAATGCAGGATTCATTAGACCTGCAAAAGCTCCGTATGAGGCCCCGGTTCTTTTCCAGAA
GAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTGAATAAACTCACGGTTCGCAACAAGTATCCTCTTCCCATAATTACTGACTTGTTCGATCGCTTAC
ATGGGGCGAAATATTTTTCAAAGTTAGACTTGCAGTCGGGGTACTACCAAGTAAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTGCGTTC
GAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCCACCTTCTGTACGTTGATGAACCAGGCCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTATCTAGA
TGATATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCAAAAATTAAAAGAGAATCAGCTGTATGTCAAAAGAGAAAAATGCTCTT
TTGCACAAGAGCGGATGAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAGTTGGAATGGAAGAAAGGAAGATTGCTGCGATACGCGACTGGGCAATGCCGAAATCAGTC
TCGGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAGTTACTGAATGCAGGATTCATTAGACCTGCAAAAGCTCCGTATGAGGCCCCGGTTCTTTTCCAGAA
GAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTGAATAAACTCACGGTTCGCAACAAGTATCCTCTTCCCATAATTACTGACTTGTTCGATCGCTTAC
ATGGGGCGAAATATTTTTCAAAGTTAGACTTGCAGTCGGGGTACTACCAAGTAAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTGCGTTC
GAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCCACCTTCTGTACGTTGATGAACCAGGCCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTATCTAGA
TGATATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCAAAAATTAAAAGAGAATCAGCTGTATGTCAAAAGAGAAAAATGCTCTT
TTGCACAAGAGCGGATGAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAGTTGGAATGGAAGAAAGGAAGATTGCTGCGATACGCGACTGGGCAATGCCGAAATCAGTC
TCGGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTTGA
Protein sequenceShow/hide protein sequence
MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAF
EFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSV
SELRSFLGLANYYR