; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc02g0058091 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0058091
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr02:23751369..23752067
RNA-Seq ExpressionCmc02g0058091
SyntenyCmc02g0058091
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-12395.24Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPL SSENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAY MAPPELAELRKQLDELLNAGFIRPAKAPYG PVLFQ+
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHG KYFSKLDLRS YYQVRIAEGDEPKTTCVT+YGAFEFLVMPFGLTNAP TFCTLMNQ FHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR
        LDKFVVVYLDDIVVYSTTMEEHRDHLQKVF+
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR

KAA0057856.1 reverse transcriptase [Cucumis melo var. makuwa]4.7e-128100Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQK
        LDKFVVVYLDDIVVYSTTMEEHRDHLQK
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQK

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-12395.24Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPL SSENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAY MAPPELAELRKQLDELLNAGFIRPAKAPYG PVLFQ+
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHG KYFSKLDLRS YYQVRIAEGDEPKTTCVT+YGAFEFLVMPFGLTNAP TFCTLMNQ FHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR
        LDKFVVVYLDDIVVYSTTMEEHRDHLQKVF+
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]6.4e-12596.54Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAY MAPPELAELRKQLDELLNAGFIRPAKAPYG PVLFQK
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHG KYFSKLDLRS YYQVRIAEGDEPKTTCVT+YGAFEFLVMPFGLTNAP TFCTLMNQ FHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR
        LDKFVVVYLDDIVVYSTTMEEHRDHLQKVF+
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR

TYK28653.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-12496.1Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPLNSSENSGETV KEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAY MAPPELAELRKQLDELLNAGFIRPAKAPYG PVLFQK
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHG KYFSKLDLRS YYQVRIAEGDEPKTTCVT+YGAFEFLVMPFGLTNAP TFCTLMNQ FHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR
        LDKFVVVYLDDIVVYSTTMEEHRDHLQKVF+
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR

TrEMBL top hitse value%identityAlignment
A0A5A7UUL8 Reverse transcriptase2.3e-128100Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQK
        LDKFVVVYLDDIVVYSTTMEEHRDHLQK
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQK

A0A5D3BRZ6 Reverse transcriptase7.6e-12495.24Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPL SSENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAY MAPPELAELRKQLDELLNAGFIRPAKAPYG PVLFQ+
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHG KYFSKLDLRS YYQVRIAEGDEPKTTCVT+YGAFEFLVMPFGLTNAP TFCTLMNQ FHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR
        LDKFVVVYLDDIVVYSTTMEEHRDHLQKVF+
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR

A0A5D3C4R1 Reverse transcriptase7.6e-12495.24Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPL SSENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAY MAPPELAELRKQLDELLNAGFIRPAKAPYG PVLFQ+
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHG KYFSKLDLRS YYQVRIAEGDEPKTTCVT+YGAFEFLVMPFGLTNAP TFCTLMNQ FHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR
        LDKFVVVYLDDIVVYSTTMEEHRDHLQKVF+
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR

A0A5D3C9P8 Reverse transcriptase3.1e-12596.54Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAY MAPPELAELRKQLDELLNAGFIRPAKAPYG PVLFQK
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHG KYFSKLDLRS YYQVRIAEGDEPKTTCVT+YGAFEFLVMPFGLTNAP TFCTLMNQ FHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR
        LDKFVVVYLDDIVVYSTTMEEHRDHLQKVF+
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR

A0A5D3DY42 Reverse transcriptase2.6e-12496.1Show/hide
Query:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK
        MAIPLNSSENSGETV KEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAY MAPPELAELRKQLDELLNAGFIRPAKAPYG PVLFQK
Subjt:  MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQK

Query:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY
        KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHG KYFSKLDLRS YYQVRIAEGDEPKTTCVT+YGAFEFLVMPFGLTNAP TFCTLMNQ FHEY
Subjt:  KKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR
        LDKFVVVYLDDIVVYSTTMEEHRDHLQKVF+
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHLQKVFR

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.4e-3635.19Show/hide
Query:  EIVRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQKKKDGSLRLCIDYRAL
        E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N YP+ P ++  +  ++++ L +G IR +KA    PV+F  KK+G+LR+ +DY+ L
Subjt:  EIVRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQKKKDGSLRLCIDYRAL

Query:  NKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEYLDKFVVVYLDDIVVY
        NK    N YPLP+I  L  ++ G+  F+KLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ AP  F   +N    E  +  VV Y+DDI+++
Subjt:  NKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEYLDKFVVVYLDDIVVY

Query:  STTMEEHRDHLQKVFR
        S +  EH  H++ V +
Subjt:  STTMEEHRDHLQKVFR

P0CT41 Transposon Tf2-12 polyprotein3.4e-3635.19Show/hide
Query:  EIVRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQKKKDGSLRLCIDYRAL
        E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N YP+ P ++  +  ++++ L +G IR +KA    PV+F  KK+G+LR+ +DY+ L
Subjt:  EIVRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQKKKDGSLRLCIDYRAL

Query:  NKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEYLDKFVVVYLDDIVVY
        NK    N YPLP+I  L  ++ G+  F+KLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ AP  F   +N    E  +  VV Y+DDI+++
Subjt:  NKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEYLDKFVVVYLDDIVVY

Query:  STTMEEHRDHLQKVFR
        S +  EH  H++ V +
Subjt:  STTMEEHRDHLQKVFR

P31843 RNA-directed DNA polymerase homolog2.3e-4567.97Show/hide
Query:  SLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEYLDKF
        SLR+CIDYRAL K+T++NKYP+P + DLFDRL    +F+KLDLRS Y+QVRIA+GDEPKTTCVT+YG+FEF VMPFGLTNA  TFC LMN   +EYLD F
Subjt:  SLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEYLDKF

Query:  VVVYLDDIVV---YSTTMEEHRDHLQKV
        VVVYLDD+VV   YS ++ EH  HL+ V
Subjt:  VVVYLDDIVV---YSTTMEEHRDHLQKV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.3e-4039.57Show/hide
Query:  NSSENSGETVPKEIVRVLEKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQ
        +S++++  T+P   V + +KYR+++ + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + +LL+  FI P+K+P  +PV+  
Subjt:  NSSENSGETVPKEIVRVLEKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQ

Query:  KKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHE
         KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+   + F+ LDL S Y+Q+ +   D  KT  VT  G +E+ VMPFGL NAP TF   M   F +
Subjt:  KKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHE

Query:  YLDKFVVVYLDDIVVYSTTMEEHRDHLQKV
           +FV VYLDDI+++S + EEH  HL  V
Subjt:  YLDKFVVVYLDDIVVYSTTMEEHRDHLQKV

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.3e-4039.57Show/hide
Query:  NSSENSGETVPKEIVRVLEKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQ
        +S++++  T+P   V + +KYR+++ + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + +LL+  FI P+K+P  +PV+  
Subjt:  NSSENSGETVPKEIVRVLEKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQ

Query:  KKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHE
         KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+   + F+ LDL S Y+Q+ +   D  KT  VT  G +E+ VMPFGL NAP TF   M   F +
Subjt:  KKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHE

Query:  YLDKFVVVYLDDIVVYSTTMEEHRDHLQKV
           +FV VYLDDI+++S + EEH  HL  V
Subjt:  YLDKFVVVYLDDIVVYSTTMEEHRDHLQKV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCGTGCGCGTGCTAGAGAAGTACCGTGATGTGATGCCCGATAGTTTGCCCAAGTC
TTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCACCTGCGAAGAATGCTTATCCTATGGCGCCTCCGGAGTTAGCTGAACTTCGAA
AACAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCGTATGGGACCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATT
GATTATCGTGCCCTGAATAAACTCACGGTTCGCAACAAGTATCCCCTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGACGAAATATTTTTCAAAGTTAGACTT
GCGGTCGGAGTACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGCGTCACCCAATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCA
ATGCCCCTGTCACCTTCTGTACGTTGATGAACCAGGCCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTACCTGGATGATATAGTGGTCTATAGTACGACCATGGAG
GAACATAGAGACCACCTGCAAAAGGTTTTTAGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCGTGCGCGTGCTAGAGAAGTACCGTGATGTGATGCCCGATAGTTTGCCCAAGTC
TTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCACCTGCGAAGAATGCTTATCCTATGGCGCCTCCGGAGTTAGCTGAACTTCGAA
AACAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCGTATGGGACCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATT
GATTATCGTGCCCTGAATAAACTCACGGTTCGCAACAAGTATCCCCTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGACGAAATATTTTTCAAAGTTAGACTT
GCGGTCGGAGTACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGCGTCACCCAATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCA
ATGCCCCTGTCACCTTCTGTACGTTGATGAACCAGGCCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTACCTGGATGATATAGTGGTCTATAGTACGACCATGGAG
GAACATAGAGACCACCTGCAAAAGGTTTTTAGAAATTGA
Protein sequenceShow/hide protein sequence
MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYPMAPPELAELRKQLDELLNAGFIRPAKAPYGTPVLFQKKKDGSLRLCI
DYRALNKLTVRNKYPLPIITDLFDRLHGTKYFSKLDLRSEYYQVRIAEGDEPKTTCVTQYGAFEFLVMPFGLTNAPVTFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTME
EHRDHLQKVFRN