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Cmc02g0058531 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc02g0058531
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDEAD-box ATP-dependent RNA helicase 20-like
Genome locationCMiso1.1chr02:24041167..24043028
RNA-Seq ExpressionCmc02g0058531
SyntenyCmc02g0058531
Gene Ontology termsGO:0003724 - RNA helicase activity (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR001650 - Helicase, C-terminal
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057824.1 DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo var. makuwa]1.0e-5599.11Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPLGLATRPR
        NAIPLGLATRPR
Subjt:  NAIPLGLATRPR

XP_004138092.1 DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis sativus]1.8e-5294.64Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        +VKDIKCVIN+DFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALS LASSSGFGGSGAKFR QGHRGGFG+RTMVSGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPLGLATRPR
        NAIPLGL TRPR
Subjt:  NAIPLGLATRPR

XP_008464517.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo]1.0e-5599.11Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPLGLATRPR
        NAIPLGLATRPR
Subjt:  NAIPLGLATRPR

XP_022135421.1 DEAD-box ATP-dependent RNA helicase 30 [Momordica charantia]6.7e-4786.73Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRP-QGHRGGFGHRTMVSG
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTH NAKHAR+L+KILREAGQ+VTPALS LAS+SGFGG GAKFRP QG+RGG+G+RT+VSG
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRP-QGHRGGFGHRTMVSG

Query:  SNAIPLGLATRPR
        SNAIP+G ATRPR
Subjt:  SNAIPLGLATRPR

XP_038879141.1 DEAD-box ATP-dependent RNA helicase 20-like isoform X1 [Benincasa hispida]1.3e-5396.43Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALS LASSSGFGGS AKFRPQGHRGGFG+RTMVSGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPLGLATRPR
        NAIPLGLATRPR
Subjt:  NAIPLGLATRPR

TrEMBL top hitse value%identityAlignment
A0A0A0LP25 Helicase C-terminal domain-containing protein2.3e-5395.54Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        NVKDIKCVIN+DFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALS LASSSGFGGSGAKFR QGHRGGFG+RTMVSGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPLGLATRPR
        NAIPLGL TRPR
Subjt:  NAIPLGLATRPR

A0A1S3CLM7 DEAD-box ATP-dependent RNA helicase 20 isoform X15.0e-5699.11Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPLGLATRPR
        NAIPLGLATRPR
Subjt:  NAIPLGLATRPR

A0A5A7URR2 DEAD-box ATP-dependent RNA helicase 20 isoform X15.0e-5699.11Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPLGLATRPR
        NAIPLGLATRPR
Subjt:  NAIPLGLATRPR

A0A5D3BJX7 DEAD-box ATP-dependent RNA helicase 20 isoform X15.0e-5699.11Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPLGLATRPR
        NAIPLGLATRPR
Subjt:  NAIPLGLATRPR

A0A6J1C0Q1 DEAD-box ATP-dependent RNA helicase 303.2e-4786.73Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRP-QGHRGGFGHRTMVSG
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTH NAKHAR+L+KILREAGQ+VTPALS LAS+SGFGG GAKFRP QG+RGG+G+RT+VSG
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRP-QGHRGGFGHRTMVSG

Query:  SNAIPLGLATRPR
        SNAIP+G ATRPR
Subjt:  SNAIPLGLATRPR

SwissProt top hitse value%identityAlignment
G0SFM2 ATP-dependent RNA helicase DBP29.7e-2556.88Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGG---FGHRTMV
        +V++I  VINYD+P++ EDY+HRIGRTGRAGAKGTA TFFT ENAK ARDL+ +L+EA Q V P L  +A  SG GGS      +G  GG    GHR+  
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGG---FGHRTMV

Query:  -SGSNAIPL
         SG+NA+P+
Subjt:  -SGSNAIPL

Q4X195 ATP-dependent RNA helicase dbp29.7e-2554.39Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHR----GGFGHRTM
        +V+DI  V+NYD+P++ EDY+HRIGRTGRAGAKGTA TFFT EN+K ARDL+ IL EA Q + P L+ +A  SG GG    +   G R    GG G    
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHR----GGFGHRTM

Query:  VSGSNAIPLGLATR
         + SNA PLG A R
Subjt:  VSGSNAIPLGLATR

Q5B0J9 ATP-dependent RNA helicase dbp25.7e-2557.94Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKF-RPQGHRGGFGHRTMVSG
        +V+DI  VINYD+P++ EDYVHRIGRTGRAGAKGTA TFFT +NAK ARDL+ IL EA Q + P L+ +   SG GG G  + R  G  GG G     + 
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKF-RPQGHRGGFGHRTMVSG

Query:  SNAIPLG
        SNA PLG
Subjt:  SNAIPLG

Q5N7W4 DEAD-box ATP-dependent RNA helicase 306.3e-3267.62Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS
        +VKDIKCVIN+DFP++LEDY+HRIGRTGRAGA GTAFTFFT  NAK +R+L+KILREAGQ+V PAL ++A S+   G G  FR +G RGGFG+R   SGS
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGS

Query:  NAIPL
        N+IP+
Subjt:  NAIPL

Q8W4R3 DEAD-box ATP-dependent RNA helicase 305.2e-3466.07Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTL--ASSSGFGGSGA--KFRPQ--GHRGGFGHR
        +VKDIKCV+NYDFP++LEDY+HRIGRTGRAGAKG AFTFFTH+NAK AR+L+KIL+EAGQ+V P LS L  +S SG+GGSG    FRP+  G  GGFG +
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTL--ASSSGFGGSGA--KFRPQ--GHRGGFGHR

Query:  TMVSGSNAIPLG
           S SN +P G
Subjt:  TMVSGSNAIPLG

Arabidopsis top hitse value%identityAlignment
AT1G55150.1 DEA(D/H)-box RNA helicase family protein1.3e-2460.42Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSS-----GFGGSGAKFRPQGHRGGF
        +VKD+K VINYDFP SLEDYVHRIGRTGRAGAKGTA+TFFT  NA+ A++L  IL+EAGQ V+P L+++  S+     G GG    FR +G R G+
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSS-----GFGGSGAKFRPQGHRGGF

AT3G06480.1 DEAD box RNA helicase family protein1.4e-2143.75Show/hide
Query:  RRGDSCYLSLQNV-------KDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLA------------
        R G SC L   +V       KDI+ VINYDFP+ +EDYVHRIGRTGRAGA G AFTFFT ++ K+A DLIK+L  A Q V P +  +A            
Subjt:  RRGDSCYLSLQNV-------KDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLA------------

Query:  --------------------SSSGFGGSGAKFRPQGHRGGFGHR
                            S  GFGG G  F   G  GGFG R
Subjt:  --------------------SSSGFGGSGAKFRPQGHRGGFGHR

AT5G14610.1 DEAD box RNA helicase family protein1.0e-2155Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFR--------PQGHRGGFG
        +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G A+TFF  ++AKHA DLIKIL  A Q V P +  +A+    GG   KFR          G RGG+G
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFR--------PQGHRGGFG

AT5G14610.2 DEAD box RNA helicase family protein1.0e-2155Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFR--------PQGHRGGFG
        +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G A+TFF  ++AKHA DLIKIL  A Q V P +  +A+    GG   KFR          G RGG+G
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFR--------PQGHRGGFG

AT5G63120.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein3.7e-3566.07Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTL--ASSSGFGGSGA--KFRPQ--GHRGGFGHR
        +VKDIKCV+NYDFP++LEDY+HRIGRTGRAGAKG AFTFFTH+NAK AR+L+KIL+EAGQ+V P LS L  +S SG+GGSG    FRP+  G  GGFG +
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTL--ASSSGFGGSGA--KFRPQ--GHRGGFGHR

Query:  TMVSGSNAIPLG
           S SN +P G
Subjt:  TMVSGSNAIPLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGTTGGTATGGAAGTCGTCGTGGTGACAGCTGCTACTTATCCCTGCAAAATGTGAAAGATATAAAATGTGTGATCAACTATGATTTTCCATCAAGCCTC
GAGGACTACGTCCACAGGATAGGGCGAACGGGTCGTGCTGGTGCTAAGGGAACTGCATTCACATTCTTTACTCACGAGAATGCGAAACATGCCAGAGATCTTATA
AAGATACTGCGAGAAGCAGGGCAGATTGTCACCCCTGCGTTGTCTACTTTAGCCTCATCTAGTGGCTTTGGAGGTTCTGGTGCTAAATTTCGCCCCCAAGGACAC
AGAGGCGGGTTTGGTCATCGAACAATGGTTTCAGGATCAAATGCAATCCCTCTTGGTTTGGCAACAAGACCTCGCTAG
mRNA sequenceShow/hide mRNA sequence
GTAAAATACATACATTTGATTTCTTTGTAAACTTCCAAAAACAAAAACAAGATTTAAAAAAAAAAATCTTCAAAATTTGACTTGGTTTTGAAAACATTGGTAGAA
AATGGATAGCAAAATATAGAAACTCATAAATGGAAGTTATGTTTAGAAGCTTACTTCTTAAGAACCAAAAACAAAATGTTTATCAAACGAGGCCTTGCGTGTTCA
TTTTCAAATTCTAATGAGTCGGCCAGCTGCTTTCCAGTTCCTGAATATAATTTGTGGCTTGGGTTCAGAGAAAAGTTCTGTCGTGCAATGTGCAGCATGATGATT
GTTAATGTGAGACTGCTTGGTGTCGTCTCCCATTTGAAACTGCATATGCTTTTGGTTTCTTTCTTTGGACTAATGAGATCCTTTTGATTCCCCCCACTGTGACAT
AGGTTTAGTTTACATGCTACGTCTTTTGGGCTTTTCTTTTTGCATCCTCTGGGGTAGTGGTGGTGTCGTATGGTGAAGGAAGAAGGTTTGGTTTAAAAGAAATAG
AGCCACCCCCTTTTCTTACTGGCTGCTAGTACATTATCAAGTCATGGCATGAATGTCATATGAACGCAAAGATGATGCTATTTTGAGGTTTATCAATGATGTTCT
TTTCCAGGTTAAAGGGGAGGGAAATCCTATTCACTATACATTAAAGATTTGTAAATCCTCTGTACCAATGGGTCGGTAAAGGATAACGAGGAAGCAGAGACTTTG
ATGTTACTTAAAAAGATCATTTCATTGAGATGCGTGAGATAGTTATTTAACTTATTTTGGTCCTCTATAGTTATCCAAGTATTCAGTCGGTACCCATCCACAATT
AAGGAGCTGGTTGTTTTTGCAGCCTGGTTGACTCATTCATTAATGCATTGTTGGTATGGAAGTCGTCGTGGTGACAGCTGCTACTTATCCCTGCAAAATGTGAAA
GATATAAAATGTGTGATCAACTATGATTTTCCATCAAGCCTCGAGGACTACGTCCACAGGATAGGGCGAACGGGTCGTGCTGGTGCTAAGGGAACTGCATTCACA
TTCTTTACTCACGAGAATGCGAAACATGCCAGAGATCTTATAAAGATACTGCGAGAAGCAGGGCAGATTGTCACCCCTGCGTTGTCTACTTTAGCCTCATCTAGT
GGCTTTGGAGGTTCTGGTGCTAAATTTCGCCCCCAAGGACACAGAGGCGGGTTTGGTCATCGAACAATGGTTTCAGGATCAAATGCAATCCCTCTTGGTTTGGCA
ACAAGACCTCGCTAGTTCCGGTCAACTCAAAAGGGAAGGGATATGCTAGATAAGTAATGTTTTTTGAGAAACGTGGACTATTTTTATTAAGTAATATAGTCTACT
TATTTATAGAATTAGAGACCCAAGTGTTGTTTGGCATGAAAAATGGACACGTGGGTGTATATCTGTACATAAAACCAGAATTCTGGCAGTGACATTGCTGACGAT
GTTAGGATTAGGTTTGGTGGTTGTAGCCTGCAGGGTTGGTGAAGGTGATGATGACTGACATTTGAATCCTGGATATTTAGTATCAATGGAACACTATATGTGATA
TAAACGAATGCATAGTCGTGATTTCCTTGGGAGTGTTGAAAGAAAGAAAGCTATGGCTCTAAAGGAAC
Protein sequenceShow/hide protein sequence
MHCWYGSRRGDSCYLSLQNVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGH
RGGFGHRTMVSGSNAIPLGLATRPR