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Cmc03g0060281 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0060281
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionSUPPRESSOR OF ABI3-5-like
Genome locationCMiso1.1chr03:568616..572305
RNA-Seq ExpressionCmc03g0060281
SyntenyCmc03g0060281
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031840.1 RNA-binding protein 10 isoform X4 [Cucumis melo var. makuwa]1.9e-3560.93Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTI-------------CGCVN----------------------FA
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTI              GCV                       F+
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTI-------------CGCVN----------------------FA

Query:  RRTS--------CFQAIAVVKQALDVDPTNLEMLHALGVSHANGQLLLPYL
        +  +          +AIAVVKQALDVDPTNLEMLHALGVSHANG + L ++
Subjt:  RRTS--------CFQAIAVVKQALDVDPTNLEMLHALGVSHANGQLLLPYL
KAA0046226.1 RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa]1.6e-34100Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
XP_011655136.1 SUPPRESSOR OF ABI3-5 isoform X1 [Cucumis sativus]4.7e-3498.61Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKN+TMPSDWMCTICGCVNFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
XP_016903675.1 PREDICTED: SUPPRESSOR OF ABI3-5-like [Cucumis melo]9.5e-3597.3Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQAI
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ +
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQAI
XP_038876047.1 LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 [Benincasa hispida]4.7e-3498.61Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKN+TMPSDWMCTICGCVNFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
TrEMBL top hitse value%identityAlignment
A0A0A0KR81 Uncharacterized protein2.3e-3498.61Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKN+TMPSDWMCTICGCVNFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
A0A1S4E6Q5 SUPPRESSOR OF ABI3-5-like4.6e-3597.3Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQAI
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ +
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQAI
A0A5A7SM61 RNA-binding protein 10 isoform X49.3e-3660.93Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTI-------------CGCVN----------------------FA
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTI              GCV                       F+
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTI-------------CGCVN----------------------FA

Query:  RRTS--------CFQAIAVVKQALDVDPTNLEMLHALGVSHANGQLLLPYL
        +  +          +AIAVVKQALDVDPTNLEMLHALGVSHANG + L ++
Subjt:  RRTS--------CFQAIAVVKQALDVDPTNLEMLHALGVSHANGQLLLPYL
A0A5D3D622 RNA-binding protein 5-B isoform X27.9e-35100Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
A0A6J1CIZ6 SUPPRESSOR OF ABI3-5 isoform X11.9e-3395.83Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMDKIG+DGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHF+KNM MPSDWMCTICGCVNFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ
SwissProt top hitse value%identityAlignment
F4JCU0 SUPPRESSOR OF ABI3-51.7e-1861.64Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMD+I  DG+V+DGRKL F Y S+PTG AG S   E+ +R  +  S+NM +P+DW+CTICGC+NFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTICGCVNFARRTSCFQ
Arabidopsis top hitse value%identityAlignment
AT3G54230.1 suppressor of abi3-51.2e-1961.64Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMD+I  DG+V+DGRKL F Y S+PTG AG S   E+ +R  +  S+NM +P+DW+CTICGC+NFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTICGCVNFARRTSCFQ
AT3G54230.2 suppressor of abi3-51.7e-2163.01Show/hide
Query:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTICGCVNFARRTSCFQ
        MMD+I  DG+V+DGRKL F YSS+PTG AG S   E+ +R  +  S+NM +P+DW+CTICGC+NFARRTSCFQ
Subjt:  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTICGCVNFARRTSCFQ
AT5G56290.1 peroxin 59.3e-0465.52Show/hide
Query:  QAIAVVKQALDVDPTNLEMLHALGVSHAN
        QAIA + +A + DPTNLE+L ALGVSH N
Subjt:  QAIAVVKQALDVDPTNLEMLHALGVSHAN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGACAAGATTGGTGATGATGGTTTAGTTGTAGATGGCAGGAAGCTTTTCTTTGAGTACAGTAGTAAGCCAACGGGGGGTGCAGGAGGATCTTTTGCTGCAGAAAA
TACTACAAGATCAGGCCATTTTAGCAAGAACATGACAATGCCATCGGATTGGATGTGCACAATCTGTGGCTGTGTAAATTTTGCACGACGAACGTCTTGTTTTCAGGCTA
TCGCTGTAGTGAAGCAAGCATTGGACGTTGACCCTACAAACTTAGAGATGCTTCATGCACTTGGTGTGAGTCATGCAAATGGTCAGTTGTTGCTTCCTTATCTAATTACA
TGTTGTATATGTGTATATTCACTAAAAGCAATTTTTCTAACATAG
mRNA sequenceShow/hide mRNA sequence
TCATTCCCTTTTCCGTTTCAATCAGTTTCTTTCTTGATTACGATCTTGTTTGCAGAAAAATAGAAGAAGAATCTACGAGTACGCTATTGAACAAATGAAAAGAAAAAATA
TCGCCATGGGATCAAACCCTTTAGACCTCATAGAATATAACCACGACCAGCAGAACACAGCCTCCACCTCATCTCCAAAGAAGAACCTCCCGGAAGGAGTTCACTAGAAC
AAATATAGGCTTTAATGTCGGTTGGGAAAAATGGAAAATGAACATTAATGTCGGTTTTGAAAACGCGGATGTTTAATGTCGGTTTTCCACCGACATTAAAGACTAAGCTT
TAATGTCGGTTTTCCACCGACATTAAAGACTAAGCTTTAATGTCGGTTTTAAACCGACATTAAAGGTCCGCCATTTTGAAAACCGACATTAAAGGTCCATTTAATTTTTT
TTTAATAATTTTATTTTGTGAAAAAATAATAGTCTCTCTCTTACTTTACTCTTTCGACCCTCTCCTACTCGCGCAATCCCTTTTCTTCTCCAAATGAATTCGTCCATTTC
TTCTTCGGCGACTTTTTCTTCTCCGATGCCCGTTCCTTCTCCGACTTTTTCTCATTGTTTTTCTCATCTTCTTTTCTTTTTCTGAATCCTTCCCATATTCATCCAAAGGC
ATGCTCATCCACTTTCTGTAGAGGTAAATTCGTATTTTACATTTTCCATTCTTCATCTTCGATTTTGATTTTCGATTTTCATTTGGGTTTCCTTCCTTTGAGTTTCTGTT
TTCCCATTTCGTTCAATGGGAATGTTGCGGTTGATTGATTTGTTTTTTTATAATTTTATGAACTATTCATATCCAACTTTAGGGTTTAGGGTCGAATCACCATCGCTCTC
TATTTTCTCTTCTTCTTCGATAGTTCCGTCACTCTCTTCTTATGGATTGTTGGTCCCTTTCTCTCCCTCTCGACGACGAGTTCAAGAAGCTCGTCAATCGTATGAACCCT
CACAGGGTTACCATTGATAATGATTCCATCAGAAAAGCTACTCCGATTAAGTAATCAGCCCTTTCGTTGCATCAGCAAGCAGCCGAAAACCGCTGCAAAGCTCAGACACA
AACACCTCGACGTCGAGCTTCTGTGCCATCACCGGCAACAAGTCTTCATACCCTTCATCCACTCTACTTGAGGCCGAATGGGGACCCCTTCGTCATGTGCGTGTGATCAA
AGAGCGCAATTCTGGCATTTCACGGGGTTTTGCATTTATTGATTTTCCTTCAGTGGGAGCAGCACAGACAATGATGGACAAGATTGGTGATGATGGTTTAGTTGTAGATG
GCAGGAAGCTTTTCTTTGAGTACAGTAGTAAGCCAACGGGGGGTGCAGGAGGATCTTTTGCTGCAGAAAATACTACAAGATCAGGCCATTTTAGCAAGAACATGACAATG
CCATCGGATTGGATGTGCACAATCTGTGGCTGTGTAAATTTTGCACGACGAACGTCTTGTTTTCAGGCTATCGCTGTAGTGAAGCAAGCATTGGACGTTGACCCTACAAA
CTTAGAGATGCTTCATGCACTTGGTGTGAGTCATGCAAATGGTCAGTTGTTGCTTCCTTATCTAATTACATGTTGTATATGTGTATATTCACTAAAAGCAATTTTTCTAA
CATAGAGTCTTTGGAGTTGTTTGGGTTCAGAGTTGCCGTAGTTTGTGGTCATTGTAATTTGTGGGATTATATAATAGTTTTGTGGAGTTAGAATAGTTTGACTTTGGGGT
GTAGGCTATTTTAGTCTGACTATATAGTTTGTGTTTGTGGTGAAGATTTAGTCATTGGTGGTTGGTTCATTGTACTGTAACTTGCCTGTTCAAGGCTCTTTGGCATTGGC
TTTCTTGATGGAGCAATAAAGGTGTTGTAGAATTGCTCTTCATCACAATTCTCAGAGGATATGATGTATGTATATCTAAAAGGTAGGTGTAGGAAATATTTTTCATGTAA
CAACCAACAGGATGCCATATTTATTATTTATTCACAAAGTTCATTGTTGTTTCTAGTTTGTTGCCATATTTTTCAGTCAGGTTATGGCAAGGAGGAAATACCGCTGGCCC
TGGTGTGGTGTTTTTCTTTTGAAGATTAAAAAAAAAAAATCTTTGTGATATGTGGTTTGCTTGCTTTGAACGACCTTTTTTTCTCTTAAATAAGTTGGTTTCTGTTTTTT
ACATTTTTGTTTTGTTTGTGATATGGATACTTAGTTACGTAGGTTTCGGTTGCGAGACTTGCAATTATAACTAGGTCATAAAATTGTTACTTATCAATTCAACCATCTTG
ATGTCTTTTACAGGGAGATATCACTAAACAAATGACTGCAATAGAAGAAATGGTTGCAAGTGAGTACAATTAGCCAGACCCTTATCTTTGTGACAAGATCTTGAAGATGG
TCATTTGTGAAGCGTTCTAGTTTGCTATTAGTTGCAATTTTAGTTATTGCTCTCTCAATATATTCTTTTTCTTTCTTTCTTTCTTTTTT
Protein sequenceShow/hide protein sequence
MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQAIAVVKQALDVDPTNLEMLHALGVSHANGQLLLPYLIT
CCICVYSLKAIFLT