CuGenDBv2

Gene ID	Cmc03g0060861
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr03:1150711..1151739
RNA-Seq Expression	Cmc03g0060861
Synteny	Cmc03g0060861
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0057168.1 pol protein [Cucumis melo var. makuwa]

8.7e-135

78.7

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL QVLET RAN+LYAKFSKCEFWLKKV+FLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+V+AY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SCQLKSHEQNYPT DLELA VVFALKIWRH+LYGDK+QIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA+ALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQL
        QAPLL DFERAEIAVSVGEV SQL
Subjt:  QAPLLMDFERAEIAVSVGEVTSQL

KAA0060745.1 pol protein [Cucumis melo var. makuwa]

5.1e-135

79.08

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANKLYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+VVAY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQLA
        Q PLL DFERAEIAVSVGEVT+QLA
Subjt:  QAPLLMDFERAEIAVSVGEVTSQLA

KAA0063793.1 pol protein [Cucumis melo var. makuwa]

5.1e-135

79.08

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANKLYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+VVAY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQLA
        Q PLL DFERAEIAVSVGEVT+QLA
Subjt:  QAPLLMDFERAEIAVSVGEVTSQLA

KAA0066469.1 pol protein [Cucumis melo var. makuwa]

1.6e-136

76.32

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        +SFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET +ANKLYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+VVAY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQLAVVRAADLEAEDYCCSAK
        Q PLL DFERAEIAVSVGEVT+   VV +A+LE +D+ CSA+
Subjt:  QAPLLMDFERAEIAVSVGEVTSQLAVVRAADLEAEDYCCSAK

KAA0066951.1 pol protein [Cucumis melo var. makuwa]

5.1e-135

79.08

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANKLYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+VVAY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQLA
        Q PLL DFERAEIAVSVGEVT+QLA
Subjt:  QAPLLMDFERAEIAVSVGEVTSQLA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UPX4 Pol protein

4.2e-135

78.7

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL QVLET RAN+LYAKFSKCEFWLKKV+FLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+V+AY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SCQLKSHEQNYPT DLELA VVFALKIWRH+LYGDK+QIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA+ALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQL
        QAPLL DFERAEIAVSVGEV SQL
Subjt:  QAPLLMDFERAEIAVSVGEVTSQL

A0A5A7V4E4 Reverse transcriptase

2.5e-135

79.08

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANKLYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+VVAY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQLA
        Q PLL DFERAEIAVSVGEVT+QLA
Subjt:  QAPLLMDFERAEIAVSVGEVTSQLA

A0A5A7V6R2 Reverse transcriptase

2.5e-135

79.08

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANKLYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+VVAY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQLA
        Q PLL DFERAEIAVSVGEVT+QLA
Subjt:  QAPLLMDFERAEIAVSVGEVTSQLA

A0A5A7VMK1 Pol protein

7.7e-137

76.32

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        +SFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET +ANKLYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+VVAY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQLAVVRAADLEAEDYCCSAK
        Q PLL DFERAEIAVSVGEVT+   VV +A+LE +D+ CSA+
Subjt:  QAPLLMDFERAEIAVSVGEVTSQLAVVRAADLEAEDYCCSAK

A0A5A7VMR4 Reverse transcriptase

2.5e-135

79.08

Show/hide

Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANKLYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+W
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG
        PRPS VS+I SFL LAGYYRRFVEDFSRIASPLT                                             DASKKG GCVLMQQG+VVAY 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH--------------------------------------------DASKKGFGCVLMQQGRVVAYG

Query:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QAPLLMDFERAEIAVSVGEVTSQLA
        Q PLL DFERAEIAVSVGEVT+QLA
Subjt:  QAPLLMDFERAEIAVSVGEVTSQLA

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.8e-43

35.17

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        M FG  NAPA F   MN + +  L+   +V++DDI+++S +  EH + L  V E      L  +  KCEF  ++ TFLGHV++ +G+  +  KIEAI  +
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASP---------------------------------------------LTHDASKKGFGCVLMQQGRVVAY
        P P+   +I +FL L GYYR+F+ +F+ IA P                                             LT DAS    G VL Q G  ++Y
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASP---------------------------------------------LTHDASKKGFGCVLMQQGRVVAY

Query:  GSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
         S  L  HE NY T++ EL A+V+A K +RH+L G   +I +DH+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR
Subjt:  GSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

2.9e-40

32.34

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        + FG  NA ++F   ++ V ++ +     V++DD++I+S+ E++H  H+  VL+      +     K  F+ + V +LG +VS +G   D  K++AI  +
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASP--------------------------------------------------------LTHDASKKGFGC
        P P  V K+ SFL LA YYR F++DF+ IA P                                                        LT DAS  G G 
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASP--------------------------------------------------------LTHDASKKGFGC

Query:  VLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDK-IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAL
        VL Q+GR +   S  LK  EQNY T + EL A+V+AL   ++FLYG + I IFTDH+ L +    +  N + +RW   +  ++ ++ Y PGK N VADAL
Subjt:  VLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDK-IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAL

Query:  SRK
        SR+
Subjt:  SRK

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.2e-40

33.45

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        M FG  NAPA F   MN + +  L+   +V++DDI+I+S +  EH   +  V        L  +  KCEF  K+  FLGH+V+ +G+  +  K++AI S+
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASP---------------------------------------------LTHDASKKGFGCVLMQQGRVVAY
        P P+   +I +FL L GYYR+F+ +++ IA P                                             LT DAS    G VL Q G  +++
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASP---------------------------------------------LTHDASKKGFGCVLMQQGRVVAY

Query:  GSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
         S  L  HE NY  ++ EL A+V+A K +RH+L G +  I +DH+ L++    KE   +  RW   + +Y  +I Y  GK N VADALSR
Subjt:  GSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

2.5e-39

29.84

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        + FG  NAPA+F  +++ + ++ +     V+IDDI+++S+    H ++L  VL +     L     K  F   +V FLG++V+++G+  D  K+ AI+  
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH-------------------------------------------------------DASKKGFGCV
        P P+ V ++  FL +  YYR+F++D++++A PLT+                                                       DAS    G V
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTH-------------------------------------------------------DASKKGFGCV

Query:  LMQ----QGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYG-DKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA
        L Q    + R +AY S  L   E+NY T++ E+ A++++L   R +LYG   I+++TDH+ L +    +  N + +RW   +++Y+CE++Y PGK+NVVA
Subjt:  LMQ----QGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYG-DKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA

Query:  DALSR
        DALSR
Subjt:  DALSR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

4.8e-35

34.24

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Query:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW
        M FG  NAP+ F   M   F+D    FV V++DDILI+S++  EH +HL  VLE  +   L  K  KC+F  ++  FLG+ +  + ++    K  AI  +
Subjt:  MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSW

Query:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASP------------------------------------------LTHDASKKGFGCVLMQQGR------V
        P P  V +   FL +  YYRRF+ + S+IA P                                          LT DASK G G VL +         V
Subjt:  PRPSIVSKICSFLSLAGYYRRFVEDFSRIASP------------------------------------------LTHDASKKGFGCVLMQQGR------V

Query:  VAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
        V Y S  L+S ++NYP  +LEL  ++ AL  +R+ L+G    + TDH SL     + E   R +RWL+ +  YD  + Y  G  NVVADA+SR V
Subjt:  VAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

7.9e-17

43.82

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Query:  HLHQVLETHRANKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLT
        HL  VL+    ++ YA   KC F   ++ +LG  H++S EGVS D AK+EA+  WP P   +++  FL L GYYRRFV+++ +I  PLT
Subjt:  HLHQVLETHRANKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLT

Sequences

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CDS sequence

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ATGTCCTTTGGTTTTACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTGGACACGTTTGTTATAGTTTTCATTGATGACATT
TTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATCTGCACCAGGTTTTGGAGACTCATCGAGCTAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTC
TGGCTGAAGAAGGTGACTTTTCTCGGCCATGTGGTTTCTAGTGAGGGAGTTTCTGTGGACTCAGCAAAGATCGAAGCGATTACCAGTTGGCCTCGACCGTCTATA
GTTAGCAAAATTTGTAGTTTCTTGAGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCTAGTCCCTTGACTCATGATGCCTCCAAGAAA
GGATTTGGTTGCGTGTTGATGCAGCAAGGCAGGGTAGTTGCTTATGGCTCCTGTCAGTTGAAGAGTCATGAGCAGAACTATCCTACCCTTGACCTAGAGTTGGCA
GCAGTAGTTTTTGCACTGAAGATATGGAGACACTTCCTGTACGGTGATAAGATACAAATTTTCACTGACCATAAAAGCCTAAAGTACTTCTTCACCCAGAAGGAG
TTGAACATGAGACAGAGAAGATGGCTTGAATTAGTGAAGGATTATGATTGCGAGATTTTGTATCACCCAGGTAAGGCAAATGTAGTAGCTGATGCACTGAGTAGA
AAGGTTGCACATTCAGCAGCGCTTATCACCAAGCAAGCTCCTTTGCTCATGGATTTTGAGAGAGCCGAGATTGCAGTCTCAGTAGGGGAAGTTACCTCACAGTTG
GCTGTTGTCAGGGCAGCCGACCTTGAGGCAGAGGATTATTGTTGCTCAGCTAAATGA

mRNA sequence

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Protein sequence

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MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSI
VSKICSFLSLAGYYRRFVEDFSRIASPLTHDASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKE
LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLMDFERAEIAVSVGEVTSQLAVVRAADLEAEDYCCSAK

Cmc03g0060861 (gene) of Melon (Charmono) v1.1 genome