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Cmc03g0061311 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0061311
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr03:1630983..1631809
RNA-Seq ExpressionCmc03g0061311
SyntenyCmc03g0061311
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-4096.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

KAA0056932.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-4096.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

TYK11630.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-4096.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

TYK19656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-4096.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

TYK26360.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-4096.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

TrEMBL top hitse value%identityAlignment
A0A5A7T8F2 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-4196.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

A0A5A7UM60 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-4196.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-4196.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

A0A5D3D7V8 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-4196.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

A0A5D3E0Q6 Putative mitochondrial protein8.7e-4196.51Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ
        MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI+YEETFAPVARMTSVRSLLAVAA KQ
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.1e-1343.21Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAV
        +N EL A +  +TW     P  K  +  +W++ +K +  G    YKARLVA+G++Q+Y I+YEETFAPVAR++S R +L++
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1948.19Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAA
        M +E+++L+K  T+  V+LP GKRP+ CKW++K+K   D  +  YKARLV KG+ Q+ GI+++E F+PV +MTS+R++L++AA
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAA

P92520 Uncharacterized mitochondrial protein AtMg008203.4e-1850Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVA
        M +EL AL +  TW  V  P  +  +GCKW++K K HSDGT++  KARLVAKG+ QE GI + ET++PV R  ++R++L VA
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.9e-1751.81Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVA
        M  E+ A    HTWD V  PP    I GC+WI+  K +SDG++  YKARLVAKGY+Q  G++Y ETF+PV + TS+R +L VA
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVA

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.8e-1751.81Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVA
        M  E+ A    HTWD V  PP    I GC+WI+  K +SDG++  YKARLVAKGY+Q  G++Y ETF+PV + TS+R +L VA
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVA

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.2e-2861.9Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAV
        M+DE+ A+E  HTW+   LPP K+PIGCKW+YKIK +SDGTIE YKARLVAKGY+Q+ GI++ ETF+PV ++TSV+ +LA++A+
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAV

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)2.4e-1950Show/hide
Query:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVA
        M +EL AL +  TW  V  P  +  +GCKW++K K HSDGT++  KARLVAKG+ QE GI + ET++PV R  ++R++L VA
Subjt:  MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATGAATTACAGGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGCTGTAAGTGGATCTACAAAATCAAG
ACTCACTCTGATGGTACTATTGAGAGTTATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTAACTATGAAGAAACATTTGCTCCCGTGGCT
CGGATGACGTCTGTTCGAAGTTTATTAGCTGTTGCTGCTGTCAAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
GGGTAAGGGAACCTTCTATTCATCTCCAAGATTATCACTATTTTTCCACCATTGTTTCCCTTGTTGAACCTACCTATTAACAAGAGGCTAGTACTGACCCTTTAT
GGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGCTGTAAGTGGATCT
ACAAAATCAAGACTCACTCTGATGGTACTATTGAGAGTTATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTAACTATGAAGAAACATTTG
CTCCCGTGGCTCGGATGACGTCTGTTCGAAGTTTATTAGCTGTTGCTGCTGTCAAGCAGTGACCTATTCTTCAGATGGATGTTAAAAATGCTTTTCTTAATGGGA
CTCTTTCTGAAGAAGTCTATATGAAGCCACCTCCTGGTACTTCTTCTCCTCCTCACAAGGTGTGTCTCTTGCGTCGCGCACTATATGGCCTCTAACAGGCTCCAC
GAGCTTGGTTTGCCACATTTAGCTATTCCATCACTCAACTTGGTTTTACTTCTAGTTCTCATGATACTGCGCTCTTTACTCACCACACACCCCAGGGTATTGTTC
TCCTTCTTCTCTATGTTGATGACATGATTATAACTCGTAATGATCCACAGGCCATATTCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTTG
GATCTCTTAACTACTTTCTTGACCTTGAAGTCTCTCGACGCTCGGACAGGTATTTATTGTCCCAAGCTAAATATGCCTCTGGTCTTTTAGCT
Protein sequenceShow/hide protein sequence
MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ