; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0061471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0061471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr03:1724415..1725338
RNA-Seq ExpressionCmc03g0061471
SyntenyCmc03g0061471
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.6e-11371.01Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P PDTS PPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDT+LFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGSLNYFLGLEVSRRSDGY LSQAKY  DLL RS ITDSNTASTPLDPNVHLTPYDG+PLEDVSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT
                                                          DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT
Subjt:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT

Query:  TELLWLR
         ELLWLR
Subjt:  TELLWLR

KAA0060225.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-11271.01Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P P TSPPPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYV+DMIITGNDPQAIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGSLNYFLGLEVSRRS+GY LSQAKYA DLL RS ITDSNTASTPLDPNVHLTPYDG+PLEDVSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT
                                                          DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT
Subjt:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT

Query:  TELLWLR
         ELLWLR
Subjt:  TELLWLR

TYK19656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-11476.68Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P P TS PPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDP AIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGSLNYFLGLEVSRRSDGY LSQAKYA DLL RS ITDSNTASTPLDPNVHLTPYDG+PLE+VSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDATTELLWLR
                                  DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT ELLWLR
Subjt:  --------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDATTELLWLR

TYK21532.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.9e-11271.01Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P P TS PPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGSLNYFLGLEVSRRSDGY LSQAKYA DLL RS ITDSNTASTPLDPNVHLTPYDG+PLE+VSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT
                                                          DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT
Subjt:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT

Query:  TELLWLR
         ELLWLR
Subjt:  TELLWLR

TYK26360.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.3e-11476.33Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P P TS PPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDP AIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGS NYFLGLEVSRRSDGY LSQAKYA DLL RS ITDSNTASTPLDPNVHLTPYDG+PLE+VSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDATTELLWLR
                                  DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT ELLWLR
Subjt:  --------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDATTELLWLR

TrEMBL top hitse value%identityAlignment
A0A5A7UJ79 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-11371.01Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P PDTS PPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDT+LFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGSLNYFLGLEVSRRSDGY LSQAKY  DLL RS ITDSNTASTPLDPNVHLTPYDG+PLEDVSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT
                                                          DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT
Subjt:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT

Query:  TELLWLR
         ELLWLR
Subjt:  TELLWLR

A0A5A7V2X4 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-11371.01Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P P TSPPPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYV+DMIITGNDPQAIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGSLNYFLGLEVSRRS+GY LSQAKYA DLL RS ITDSNTASTPLDPNVHLTPYDG+PLEDVSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT
                                                          DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT
Subjt:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT

Query:  TELLWLR
         ELLWLR
Subjt:  TELLWLR

A0A5D3D7V8 Retrovirus-related Pol polyprotein from transposon TNT 1-948.8e-11576.68Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P P TS PPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDP AIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGSLNYFLGLEVSRRSDGY LSQAKYA DLL RS ITDSNTASTPLDPNVHLTPYDG+PLE+VSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDATTELLWLR
                                  DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT ELLWLR
Subjt:  --------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDATTELLWLR

A0A5D3DD70 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-11271.01Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P P TS PPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGSLNYFLGLEVSRRSDGY LSQAKYA DLL RS ITDSNTASTPLDPNVHLTPYDG+PLE+VSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT
                                                          DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT
Subjt:  --------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDAT

Query:  TELLWLR
         ELLWLR
Subjt:  TELLWLR

A0A5D3DT06 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-11476.33Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS
        MDVKN FLNGTLSEEVYM+P P TS PPHK+CLL RALYGLKQAPRAWF TFSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDP AIS
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS

Query:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------
        DLQHYLGQH EMKDLGS NYFLGLEVSRRSDGY LSQAKYA DLL RS ITDSNTASTPLDPNVHLTPYDG+PLE+VSLYRQLV                
Subjt:  DLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------------

Query:  --------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDATTELLWLR
                                  DW GDPTD RSTT YCFYLGDSLISW SKKQSVVSRSSTES+YRAL DAT ELLWLR
Subjt:  --------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVDATTELLWLR

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.9e-3128.85Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALF--TRHTPQGIVLLLLYVDDMIITGNDPQA
        MDVK  FLNGTL EE+YM+     S     +C L++A+YGLKQA R WF  F   + +  F +S  D  ++   +      + +LLYVDD++I   D   
Subjt:  MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALF--TRHTPQGIVLLLLYVDDMIITGNDPQA

Query:  ISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHL----------TPYDGL----------------
        +++ + YL +   M DL  + +F+G+ +  + D  +LSQ+ Y   +L +  + + N  STPL   ++           TP   L                
Subjt:  ISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHL----------TPYDGL----------------

Query:  ----------PLEDVSLYRQL--------------------------------VDWVGDPTDLRSTTDYCFYLGD-SLISWCSKKQSVVSRSSTESKYRA
                     +  L++ L                                 DW G   D +STT Y F + D +LI W +K+Q+ V+ SSTE++Y A
Subjt:  ----------PLEDVSLYRQL--------------------------------VDWVGDPTDLRSTTDYCFYLGD-SLISWCSKKQSVVSRSSTESKYRA

Query:  LVDATTELLWLR
        L +A  E LWL+
Subjt:  LVDATTELLWLR

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-2337.21Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCP--DTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTAL-FTRHTPQGIVLLLLYVDDMIITGNDPQ
        +DVK  FL+G L EE+YM+     + +   H +C L+++LYGLKQAPR W+  F S +    +  +  D  + F R +    ++LLLYVDDM+I G D  
Subjt:  MDVKNVFLNGTLSEEVYMQPCP--DTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTAL-FTRHTPQGIVLLLLYVDDMIITGNDPQ

Query:  AISDLQHYLGQHSEMKDLGSLNYFLGLEV--SRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLT
         I+ L+  L +  +MKDLG     LG+++   R S   +LSQ KY   +L R  + ++   STPL  ++ L+
Subjt:  AISDLQHYLGQHSEMKDLGSLNYFLGLEV--SRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLT

P92519 Uncharacterized mitochondrial protein AtMg008102.7e-2031.84Show/hide
Query:  LLLYVDDMIITGNDPQAISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPL--------------DPN----
        LLLYVDD+++TG+    ++ L   L     MKDLG ++YFLG+++     G FLSQ KYA  +L  + + D    STPL              DP+    
Subjt:  LLLYVDDMIITGNDPQAISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPL--------------DPN----

Query:  -VHLTPYDGLPLEDVSLYRQLV----------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQS
         V    Y  L   D+S    +V                                              DW G  +  RSTT +C +LG ++ISW +K+Q 
Subjt:  -VHLTPYDGLPLEDVSLYRQLV----------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQS

Query:  VVSRSSTESKYRALVDATTELLW
         VSRSSTE++YRAL     EL W
Subjt:  VVSRSSTESKYRALVDATTELLW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-4434.74Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPD--TSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQA
        +DV N FL GTL+++VYM   P       P+ +C L +ALYGLKQAPRAW+    + +  +GF +S  DT+LF     + IV +L+YVDD++ITGNDP  
Subjt:  MDVKNVFLNGTLSEEVYMQPCPD--TSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQA

Query:  ISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV--------------
        + +    L Q   +KD   L+YFLG+E  R   G  LSQ +Y LDLL R+ +  +   +TP+ P+  L+ Y G  L D + YR +V              
Subjt:  ISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV--------------

Query:  ----------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVD
                                                            DW GD  D  ST  Y  YLG   ISW SKKQ  V RSSTE++YR++ +
Subjt:  ----------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVD

Query:  ATTELLWL
         ++E+ W+
Subjt:  ATTELLWL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.6e-4233.77Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCPD--TSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQA
        +DV N FL GTL++EVYM   P       P  +C L +A+YGLKQAPRAW+    + +  +GF +S  DT+LF     + I+ +L+YVDD++ITGND   
Subjt:  MDVKNVFLNGTLSEEVYMQPCPD--TSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQA

Query:  ISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV--------------
        +      L Q   +K+   L+YFLG+E  R   G  LSQ +Y LDLL R+ +  +   +TP+  +  LT + G  L D + YR +V              
Subjt:  ISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV--------------

Query:  ----------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVD
                                                            DW GD  D  ST  Y  YLG   ISW SKKQ  V RSSTE++YR++ +
Subjt:  ----------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYRALVD

Query:  ATTELLWL
         ++EL W+
Subjt:  ATTELLWL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 88.0e-4434.29Show/hide
Query:  MDVKNVFLNGTLSEEVYMQPCP------DTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGN
        +D+ N FLNG L EE+YM+  P        S PP+ +C L +++YGLKQA R WF  FS T+   GF  S  D   F + T    + +L+YVDD+II  N
Subjt:  MDVKNVFLNGTLSEEVYMQPCP------DTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGN

Query:  DPQAISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------
        +  A+ +L+  L    +++DLG L YFLGLE++R + G  + Q KYALDLL  + +     +S P+DP+V  + + G    D   YR+L+          
Subjt:  DPQAISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLV----------

Query:  --------------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYR
                                                                 +       RST  YC +LG SLISW SKKQ VVS+SS E++YR
Subjt:  --------------------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSRSSTESKYR

Query:  ALVDATTELLWL
        AL  AT E++WL
Subjt:  ALVDATTELLWL

ATMG00810.1 DNA/RNA polymerases superfamily protein1.9e-2131.84Show/hide
Query:  LLLYVDDMIITGNDPQAISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPL--------------DPN----
        LLLYVDD+++TG+    ++ L   L     MKDLG ++YFLG+++     G FLSQ KYA  +L  + + D    STPL              DP+    
Subjt:  LLLYVDDMIITGNDPQAISDLQHYLGQHSEMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPL--------------DPN----

Query:  -VHLTPYDGLPLEDVSLYRQLV----------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQS
         V    Y  L   D+S    +V                                              DW G  +  RSTT +C +LG ++ISW +K+Q 
Subjt:  -VHLTPYDGLPLEDVSLYRQLV----------------------------------------------DWVGDPTDLRSTTDYCFYLGDSLISWCSKKQS

Query:  VVSRSSTESKYRALVDATTELLW
         VSRSSTE++YRAL     EL W
Subjt:  VVSRSSTESKYRALVDATTELLW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCAAAAATGTTTTCCTTAATGGGACTCTTTCTGAAGAAGTCTATATGCAGCCTTGTCCTGATACTTCTCCTCCTCCTCATAAGTTGTGCCTTCTGCATCGAGC
ATTATATGGTCTGAAACAGGCTCCACGGGCTTGGTTTGGCACATTTAGCTCTACCATCACTCAACTTGGATTTTCTTCTAGTCCTCATGATACTGCACTCTTTACTCGTC
ACACACCCCAGGGTATTGTTCTTCTTCTCCTTTATGTTGATGACATGATTATCACTGGTAATGATCCACAGGCCATATCTGATCTCCAACATTATCTTGGTCAACATTCT
GAGATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAGTCTCTCGACGCTCAGATGGGTATTTCTTATCTCAAGCCAAATATGCCTTGGATCTCTTAGTCCG
CTCAGAAATTACTGACTCTAACACAGCTTCGACACCATTAGATCCCAATGTTCATTTGACCCCTTATGATGGTCTTCCTCTTGAAGATGTGAGTCTATATCGACAACTTG
TTGATTGGGTTGGGGATCCCACTGATCTGCGCTCTACAACAGATTACTGTTTTTACTTAGGCGATTCTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGT
TCCAGCACTGAATCAAAATATCGTGCCCTTGTTGATGCTACTACTGAACTCCTATGGCTTCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCAAAAATGTTTTCCTTAATGGGACTCTTTCTGAAGAAGTCTATATGCAGCCTTGTCCTGATACTTCTCCTCCTCCTCATAAGTTGTGCCTTCTGCATCGAGC
ATTATATGGTCTGAAACAGGCTCCACGGGCTTGGTTTGGCACATTTAGCTCTACCATCACTCAACTTGGATTTTCTTCTAGTCCTCATGATACTGCACTCTTTACTCGTC
ACACACCCCAGGGTATTGTTCTTCTTCTCCTTTATGTTGATGACATGATTATCACTGGTAATGATCCACAGGCCATATCTGATCTCCAACATTATCTTGGTCAACATTCT
GAGATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAGTCTCTCGACGCTCAGATGGGTATTTCTTATCTCAAGCCAAATATGCCTTGGATCTCTTAGTCCG
CTCAGAAATTACTGACTCTAACACAGCTTCGACACCATTAGATCCCAATGTTCATTTGACCCCTTATGATGGTCTTCCTCTTGAAGATGTGAGTCTATATCGACAACTTG
TTGATTGGGTTGGGGATCCCACTGATCTGCGCTCTACAACAGATTACTGTTTTTACTTAGGCGATTCTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGT
TCCAGCACTGAATCAAAATATCGTGCCCTTGTTGATGCTACTACTGAACTCCTATGGCTTCGCTAG
Protein sequenceShow/hide protein sequence
MDVKNVFLNGTLSEEVYMQPCPDTSPPPHKLCLLHRALYGLKQAPRAWFGTFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAISDLQHYLGQHS
EMKDLGSLNYFLGLEVSRRSDGYFLSQAKYALDLLVRSEITDSNTASTPLDPNVHLTPYDGLPLEDVSLYRQLVDWVGDPTDLRSTTDYCFYLGDSLISWCSKKQSVVSR
SSTESKYRALVDATTELLWLR