| GenBank top hits | e value | %identity | Alignment |
|---|
| PKU68986.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum] | 2.8e-48 | 50 | Show/hide |
Query: HTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTKT-CICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFVDDLT
HTA+ ++ K + T+WH RLGHP+ +V N++ L KT CE C K HKL F HS + + L +IH+ VWGPA S GF++YV FVDD T
Subjt: HTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTKT-CICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFVDDLT
Query: KYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPTKFWS
+YTWI+P++ KSDV +VF +FK +EN RIKTLR+DGG EF+N ++L +G SHQ S PYT +QNG+AERKHRHIIE +L+ AS+P FW+
Subjt: KYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPTKFWS
Query: FAFATA
A TA
Subjt: FAFATA
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| PKU80445.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum] | 1.8e-47 | 46.92 | Show/hide |
Query: NSPTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTKT-CICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFF
+S +HTA+ ++ + ++ +WH RLGHP+ +V N + + +L + K CE+C K HKL F HS L +IH+ VWGPA ++ GF++YV F
Subjt: NSPTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTKT-CICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFF
Query: VDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIP
+DD T+YTWI+P++ KSDV +VF FK +EN RIKT+R+DGG EF+N +FL +NG SHQ S PYT +QNG+AERKHRHIIE +L+ AS+P
Subjt: VDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIP
Query: TKFWSFAFATA
+W+ A TA
Subjt: TKFWSFAFATA
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| RVW44416.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera] | 2.3e-47 | 45.71 | Show/hide |
Query: PTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTK--TCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFV
P+ + +S TLWHNRLGHP + +++ VL+ NLP K + IC C GK+HK PF HS S+ L++IHT +WGPAS S +G +YY+ F+
Subjt: PTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTK--TCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFV
Query: DDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPT
D +++TWI+ ++ KS+ VF HFK VE Q +IK ++SD GGE+ + +LT+NG H+ S PYTH+QNG+AER HRHI+E I+L+ +AS+P
Subjt: DDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPT
Query: KFWSFAFATA
K+W AF T+
Subjt: KFWSFAFATA
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| RVW80632.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.0e-47 | 46.19 | Show/hide |
Query: PTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTK--TCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFV
P+ + +SS TLWHNRLGHP + +++ VL+ NLP K + IC C GK+HK PF HS S+ L++IHT +WGP S S +G +YY+ F+
Subjt: PTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTK--TCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFV
Query: DDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPT
D +++TWI+ ++ KS+ VF HFK VE Q +IK ++SD GGE+ + +LT+NG H+ S PYTH+QNG+AERKHRHI+E I+L+ +AS+P
Subjt: DDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPT
Query: KFWSFAFATA
K+W AF T+
Subjt: KFWSFAFATA
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| RVX03712.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 2.8e-48 | 46.23 | Show/hide |
Query: PTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTK--TCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFV
P+ + +S TLWHNRLGHP + +++ VL+ NLP K + IC C GK+HK PF HS S+ L++IHT +WGPAS S +G +YY+ F+
Subjt: PTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTK--TCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFV
Query: DDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPT
D +++TWI+ ++ KS+ VF HFK VE Q +IK ++SD GGE+ + +LT+NG H+ S PYTH+QNG+AERKHRHI+E I+L+ +AS+P
Subjt: DDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPT
Query: KFWSFAFATAHH
K+W AF T+ H
Subjt: KFWSFAFATAHH
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2N9E6N0 Uncharacterized protein | 4.4e-52 | 49.55 | Show/hide |
Query: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
+H + + +SP + HT+ SS SS LWHNRLGHP V+ VL + L LP T +C +CL GKMHKLPF + S T L+I+H+ VWGPA S
Subjt: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
Query: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
N +YYV FVDD T++TW FP++ KS V + F HFK +EN S ++K LR+D GGE+ D SF ++ G HQ + P+T QQNGVAERKHRHI+++ +
Subjt: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
Query: SLMTRASIPTKFWSFAFATA
+LM++AS+P FW +AF+TA
Subjt: SLMTRASIPTKFWSFAFATA
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| A0A2N9GWG5 Uncharacterized protein | 8.9e-53 | 50 | Show/hide |
Query: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
+H + + +SP + HT+ SS SS LWHNRLGHP V+ VL + L LP T +C +CL GKMHKLPF +S S T L+I+H+ VWGPA S
Subjt: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
Query: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
N +YYV FVDD T++TW FP++ KS V + F HFK +EN S ++K LR+D GGE+ D SF ++ G HQ + P+T QQNGVAERKHRHI+++ +
Subjt: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
Query: SLMTRASIPTKFWSFAFATA
+LM++AS+P FW +AF+TA
Subjt: SLMTRASIPTKFWSFAFATA
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| A0A2N9HH98 Uncharacterized protein | 8.9e-53 | 50 | Show/hide |
Query: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
+H + + +SP + HT+ SS SS LWHNRLGHP V+ VL + L LP T +C +CL GKMHKLPF +S S T L+I+H+ VWGPA S
Subjt: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
Query: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
N +YYV FVDD T++TW FP++ KS V + F HFK +EN S ++K LR+D GGE+ D SF ++ G HQ + P+T QQNGVAERKHRHI+++ +
Subjt: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
Query: SLMTRASIPTKFWSFAFATA
+LM++AS+P FW +AF+TA
Subjt: SLMTRASIPTKFWSFAFATA
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| A0A2N9HIU2 Uncharacterized protein | 4.4e-52 | 49.55 | Show/hide |
Query: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
+H + + +SP + HT+ SS SS LWHNRLGHP V+ VL + L LP T +C +CL GKMHKLPF + S T L+I+H+ VWGPA S
Subjt: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
Query: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
N +YYV FVDD T++TW FP++ KS V + F HFK +EN S ++K LR+D GGE+ D SF ++ G HQ + P+T QQNGVAERKHRHI+++ +
Subjt: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
Query: SLMTRASIPTKFWSFAFATA
+LM++AS+P FW +AF+TA
Subjt: SLMTRASIPTKFWSFAFATA
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| A0A2N9HKM9 Uncharacterized protein | 8.9e-53 | 50 | Show/hide |
Query: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
+H + + +SP + HT+ SS SS LWHNRLGHP V+ VL + L LP T +C +CL GKMHKLPF +S S T L+I+H+ VWGPA S
Subjt: LHMSQIKKNSPTV-HTAIQSSSKISSTLWHNRLGHPYTQVLNTVL-HSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISI
Query: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
N +YYV FVDD T++TW FP++ KS V + F HFK +EN S ++K LR+D GGE+ D SF ++ G HQ + P+T QQNGVAERKHRHI+++ +
Subjt: NGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAI
Query: SLMTRASIPTKFWSFAFATA
+LM++AS+P FW +AF+TA
Subjt: SLMTRASIPTKFWSFAFATA
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.1e-22 | 31.38 | Show/hide |
Query: NFIQSLHMSQIKKNSPTVH---TAIQSSSKISSTLWHNRLGHPYTQVL-----------NTVLHSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLS
N + + S + N P ++ +I + K + LWH R GH L ++L++L L SC ICE CL GK +LPF T +
Subjt: NFIQSLHMSQIKKNSPTVH---TAIQSSSKISSTLWHNRLGHPYTQVL-----------NTVLHSLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLS
Query: --LQIIHTYVWGPASEISINGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYT
L ++H+ V GP + ++++ Y+V FVD T Y + I+ KSDV ++F+ F E F+ ++ L D G E+++ ++ F G S+ + P+T
Subjt: --LQIIHTYVWGPASEISINGFKYYVFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYT
Query: HQQNGVAERKHRHIIEVAISLMTRASIPTKFWSFAFATA
Q NGV+ER R I E A ++++ A + FW A TA
Subjt: HQQNGVAERKHRHIIEVAISLMTRASIPTKFWSFAFATA
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.2e-32 | 35.15 | Show/hide |
Query: SSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTKTCI--CEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFVDDLTKYTW
+ +IS LWH R+GH + L + + T + C+YCL+GK H++ F S + L ++++ V GP S+ G KY+V F+DD ++ W
Subjt: SSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCTKTCI--CEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYVFFVDDLTKYTW
Query: IFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPTKFWSFAFA
++ ++ K V VF+ F LVE + ++K LRSD GGE+ +++ + +++G H+K+ P T Q NGVAER +R I+E S++ A +P FW A
Subjt: IFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPTKFWSFAFA
Query: TA
TA
Subjt: TA
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| P47024 Transposon Ty4-J Gag-Pol polyprotein | 1.1e-10 | 27.18 | Show/hide |
Query: HNRLGHP-YTQVLNTVLH-----SLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIH-------TYVWGPASEISINGFKYYVFFVDDLTKYT
H R+GH Q+ N++ H SL+L C+ C K+ K + Y+ +M + H ++GP S + + +Y + VD+ T+Y
Subjt: HNRLGHP-YTQVLNTVLH-----SLNLPSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIH-------TYVWGPASEISINGFKYYVFFVDDLTKYT
Query: WI---FPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPTKFWS
F ++ + V K+ + VE QF +++ + SD G EF N + + + G H + H NG AER R II A +L+ ++++ KFW
Subjt: WI---FPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRASIPTKFWS
Query: FAFATA
+A +A
Subjt: FAFATA
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 7.6e-41 | 42.06 | Show/hide |
Query: NSPTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNL----PSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYY
+S V SSK + + WH RLGHP +LN+V+ + +L PS K C CL K +K+PFS S + L+ I++ VW + +S + ++YY
Subjt: NSPTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNL----PSCTKTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYY
Query: VFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRA
V FVD T+YTW++P+++KS V F FK L+EN+F +RI T SD GGEF+ L + + +G SH S P+T + NG++ERKHRHI+E ++L++ A
Subjt: VFFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRA
Query: SIPTKFWSFAFATA
SIP +W +AFA A
Subjt: SIPTKFWSFAFATA
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.6e-44 | 42.72 | Show/hide |
Query: NSPTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCT---KTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYV
+S V SK + + WH+RLGHP +LN+V+ + +LP K C C K HK+PFS+S T+ L+ I++ VW + +SI+ ++YYV
Subjt: NSPTVHTAIQSSSKISSTLWHNRLGHPYTQVLNTVLHSLNLPSCT---KTCICEYCLYGKMHKLPFSHSYSTTMLSLQIIHTYVWGPASEISINGFKYYV
Query: FFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRAS
FVD T+YTW++P+++KS V + F FK LVEN+F +RI TL SD GGEF+ L +L+ +G SH S P+T + NG++ERKHRHI+E+ ++L++ AS
Subjt: FFVDDLTKYTWIFPIERKSDVTNVFKHFKPLVENQFSSRIKTLRSDGGGEFINQDLLSFLTANGKSHQKSYPYTHQQNGVAERKHRHIIEVAISLMTRAS
Query: IPTKFWSFAFATA
+P +W +AF+ A
Subjt: IPTKFWSFAFATA
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