; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0062321 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0062321
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein, putative
Genome locationCMiso1.1chr03:2519767..2520501
RNA-Seq ExpressionCmc03g0062321
SyntenyCmc03g0062321
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047745.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-10287.44Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        MCVDS+AINRIT+KY F IPRIGDLLDQLGK  +FSKI+LRSGYHQIRIR GDEWK  FKTNEGLFEWLV+PFGLSNAPS FMRLMNQVLHPFLNQFIVV
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
            ILVYSSSREDHLQHL KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGM+PKK+EA+QSWPAPTSIKEVQAFL LASFYRRFIR+FS I 
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  APLTDCLKKGNFKWE
        APLTDCLKKG FKW+
Subjt:  APLTDCLKKGNFKWE

KAA0051933.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]3.2e-9568.44Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        MCVDS+AINRI +KY FPIPRI DLLDQLG A IFSKI+LRSGY QIRIRPGDEWK AFKTNEGLF+WLVMPFGLSNAPSTFMRLMNQVLHPFLN+F++V
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
        YFDDIL +S + ++H  HL +LF+ L + ELYIN KKC F  +EI FLGF+I++  I M  KK+EA+++WP PTS+KEVQAF+GLASFYR+FI +F  I 
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  APLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF
        AP+ DCLKKG+F W + +Q SFE +K +L+++PIL+LPDF+  F
Subjt:  APLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF

KAA0062943.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]2.7e-10277.05Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        MCVDS+AINRIT+KYWFPIP++GDLLDQLGKA +FSKI+LRS YHQIRIRP DEWK  FK NEGLFEWL MPFGLSNAPSTF                  
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
                S SREDHLQHL KLFQVL E ELYINPKKCTFL KEIVFLGFLIKEGKIGM+PKK+EA+QSWPAPTSIKEVQAFLGLASFY+RFIR+FS I+
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  APLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF
         PLTD LKK NFKWEHMQQQSFEEIKRRLTSSPILQLPDF S F
Subjt:  APLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF

KAA0063033.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.3e-9986.96Show/hide
Query:  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSR
        MKY FPIPRIGDLLDQLGKAT+FSKI+LR GYH    RPGDEWK AF TNE LF+WLVMPFGLSNAPSTFMRLMNQVL+PFLNQFIVVYFDDILVYSSSR
Subjt:  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSR

Query:  EDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNF
        EDHLQHL KLFQVLTE ELYINPKKCTFLTKEIVFLGFLIKEGKIG++PKK+EA+QSWP PT IKEVQ FLGLASFY+RFIR+FS I+APLT+CLKKGNF
Subjt:  EDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNF

Query:  KWEHMQQ
        KWEHMQQ
Subjt:  KWEHMQQ

TYK16315.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.7e-10087.44Show/hide
Query:  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSR
        MKY FPIPRIGDLLDQLGKAT+FSKI+LR GYHQIRIRPGDEWK AF TNE LF+WLVMPFGLSNAPSTFMRLMNQVL+PFLNQFIVVYFDDILV SSSR
Subjt:  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSR

Query:  EDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNF
        EDHLQHL KLFQVLTE ELYINPKK TFLTKEIVFLGFLIKEGKIG++PKK+EA+QSWP PT IKEVQ FLGLASFY+RFIR+FS I+APLT+ LKKGNF
Subjt:  EDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNF

Query:  KWEHMQQ
        KWEHMQQ
Subjt:  KWEHMQQ

TrEMBL top hitse value%identityAlignment
A0A5A7V4G7 Retrovirus-related Pol polyprotein from transposon 17.61.3e-10277.05Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        MCVDS+AINRIT+KYWFPIP++GDLLDQLGKA +FSKI+LRS YHQIRIRP DEWK  FK NEGLFEWL MPFGLSNAPSTF                  
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
                S SREDHLQHL KLFQVL E ELYINPKKCTFL KEIVFLGFLIKEGKIGM+PKK+EA+QSWPAPTSIKEVQAFLGLASFY+RFIR+FS I+
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  APLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF
         PLTD LKK NFKWEHMQQQSFEEIKRRLTSSPILQLPDF S F
Subjt:  APLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF

A0A5A7V4Q2 Retrovirus-related Pol polyprotein from transposon 17.66.2e-10086.96Show/hide
Query:  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSR
        MKY FPIPRIGDLLDQLGKAT+FSKI+LR GYH    RPGDEWK AF TNE LF+WLVMPFGLSNAPSTFMRLMNQVL+PFLNQFIVVYFDDILVYSSSR
Subjt:  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSR

Query:  EDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNF
        EDHLQHL KLFQVLTE ELYINPKKCTFLTKEIVFLGFLIKEGKIG++PKK+EA+QSWP PT IKEVQ FLGLASFY+RFIR+FS I+APLT+CLKKGNF
Subjt:  EDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNF

Query:  KWEHMQQ
        KWEHMQQ
Subjt:  KWEHMQQ

A0A5D3BW84 DNA/RNA polymerases superfamily protein1.0e-10287.44Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        MCVDS+AINRIT+KY F IPRIGDLLDQLGK  +FSKI+LRSGYHQIRIR GDEWK  FKTNEGLFEWLV+PFGLSNAPS FMRLMNQVLHPFLNQFIVV
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
            ILVYSSSREDHLQHL KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGM+PKK+EA+QSWPAPTSIKEVQAFL LASFYRRFIR+FS I 
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  APLTDCLKKGNFKWE
        APLTDCLKKG FKW+
Subjt:  APLTDCLKKGNFKWE

A0A5D3CPI6 Putative gag-pol polyprotein1.6e-9568.44Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        MCVDS+AINRI +KY FPIPRI DLLDQLG A IFSKI+LRSGY QIRIRPGDEWK AFKTNEGLF+WLVMPFGLSNAPSTFMRLMNQVLHPFLN+F++V
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
        YFDDIL +S + ++H  HL +LF+ L + ELYIN KKC F  +EI FLGF+I++  I M  KK+EA+++WP PTS+KEVQAF+GLASFYR+FI +F  I 
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  APLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF
        AP+ DCLKKG+F W + +Q SFE +K +L+++PIL+LPDF+  F
Subjt:  APLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF

A0A5D3CXW2 DNA/RNA polymerases superfamily protein2.8e-10087.44Show/hide
Query:  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSR
        MKY FPIPRIGDLLDQLGKAT+FSKI+LR GYHQIRIRPGDEWK AF TNE LF+WLVMPFGLSNAPSTFMRLMNQVL+PFLNQFIVVYFDDILV SSSR
Subjt:  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSR

Query:  EDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNF
        EDHLQHL KLFQVLTE ELYINPKK TFLTKEIVFLGFLIKEGKIG++PKK+EA+QSWP PT IKEVQ FLGLASFY+RFIR+FS I+APLT+ LKKGNF
Subjt:  EDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNF

Query:  KWEHMQQ
        KWEHMQQ
Subjt:  KWEHMQQ

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.7e-5442.86Show/hide
Query:  VDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYF
        +D + +N IT+    PIP + ++L +LG+   F+ I+L  G+HQI + P    K AF T  G +E+L MPFGL NAP+TF R MN +L P LN+  +VY 
Subjt:  VDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYF

Query:  DDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAP
        DDI+V+S+S ++HLQ L  +F+ L +  L +   KC FL +E  FLG ++    I   P+KIEA+Q +P PT  KE++AFLGL  +YR+FI +F+ I  P
Subjt:  DDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAP

Query:  LTDCLKKGNFKWEHMQQQ---SFEEIKRRLTSSPILQLPDFASTF
        +T CLKK N K +    +   +F+++K  ++  PIL++PDF   F
Subjt:  LTDCLKKGNFKWEHMQQQ---SFEEIKRRLTSSPILQLPDFASTF

P0CT41 Transposon Tf2-12 polyprotein4.9e-4638.43Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        M VD K +N+      +P+P I  LL ++  +TIF+K++L+S YH IR+R GDE K+AF+   G+FE+LVMP+G+S AP+ F   +N +L       +V 
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
        Y DDIL++S S  +H++H+  + Q L    L IN  KC F   ++ F+G+ I E       + I+ +  W  P + KE++ FLG  ++ R+FI   S + 
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  APLTDCLKKG-NFKWEHMQQQSFEEIKRRLTSSPILQLPDFA
         PL + LKK   +KW   Q Q+ E IK+ L S P+L+  DF+
Subjt:  APLTDCLKKG-NFKWEHMQQQSFEEIKRRLTSSPILQLPDFA

P20825 Retrovirus-related Pol polyprotein from transposon 2972.1e-5241.87Show/hide
Query:  VDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYF
        +D + +N IT+   +PIP + ++L +LGK   F+ I+L  G+HQI +      K AF T  G +E+L MPFGL NAP+TF R MN +L P LN+  +VY 
Subjt:  VDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYF

Query:  DDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAP
        DDI+++S+S  +HL  +  +F  L +  L +   KC FL KE  FLG ++    I   P K++A+ S+P PT  KE++AFLGL  +YR+FI +++ I  P
Subjt:  DDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAP

Query:  LTDCLKK----GNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF
        +T CLKK       K E++  ++FE++K  +   PILQLPDF   F
Subjt:  LTDCLKK----GNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.1e-4841.77Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        +CVD + +N+ T+   FP+PRI +LL ++G A IF+ ++L SGYHQI + P D +K AF T  G +E+ VMPFGL NAPSTF R M         +F+ V
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
        Y DDIL++S S E+H +HL  + + L    L +  KKC F ++E  FLG+ I   KI     K  A++ +P P ++K+ Q FLG+ ++YRRFI + S I 
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  AP--LTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPIL
         P  L  C K    +W   Q ++ E++K  L +SP+L
Subjt:  AP--LTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPIL

Q99315 Transposon Ty3-G Gag-Pol polyprotein9.0e-4841.35Show/hide
Query:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV
        +CVD + +N+ T+   FP+PRI +LL ++G A IF+ ++L SGYHQI + P D +K AF T  G +E+ VMPFGL NAPSTF R M         +F+ V
Subjt:  MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVV

Query:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM
        Y DDIL++S S E+H +HL  + + L    L +  KKC F ++E  FLG+ I   KI     K  A++ +P P ++K+ Q FLG+ ++YRRFI + S I 
Subjt:  YFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIM

Query:  AP--LTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPIL
         P  L  C K    +W   Q ++ +++K  L +SP+L
Subjt:  AP--LTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPIL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.0e-2236.64Show/hide
Query:  LQHLSKLFQVLTETELYINPKKCTFLTKEIVFLG--FLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFK
        + HL  + Q+  + + Y N KKC F   +I +LG   +I    +   P K+EA+  WP P +  E++ FLGL  +YRRF++++  I+ PLT+ LKK + K
Subjt:  LQHLSKLFQVLTETELYINPKKCTFLTKEIVFLG--FLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFK

Query:  WEHMQQQSFEEIKRRLTSSPILQLPDFASTF
        W  M   +F+ +K  +T+ P+L LPD    F
Subjt:  WEHMQQQSFEEIKRRLTSSPILQLPDFASTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTAGATAGCAAAGCTATTAACCGAATTACTATGAAGTATTGGTTTCCTATCCCTCGGATTGGAGATCTTTTAGACCAACTAGGCAAGGCTACGATCTTCTCAAA
GATTAATTTAAGGAGCGGCTATCACCAAATACGAATCAGACCAGGAGATGAGTGGAAGATAGCCTTCAAGACAAATGAAGGATTGTTTGAATGGTTGGTAATGCCTTTTG
GCTTATCCAATGCGCCAAGCACTTTTATGAGGTTGATGAATCAAGTACTACATCCATTCTTAAACCAGTTTATAGTGGTTTACTTTGATGACATCCTTGTGTATAGCAGC
AGTCGTGAAGACCATCTACAACACCTAAGCAAATTGTTTCAAGTTTTGACTGAAACAGAATTATATATAAATCCAAAGAAGTGCACATTTCTCACCAAGGAAATCGTCTT
TCTTGGGTTCTTGATCAAAGAAGGAAAGATAGGGATGAAACCTAAGAAAATAGAAGCTTTACAATCTTGGCCAGCACCAACATCCATCAAAGAAGTGCAAGCTTTTCTTG
GCTTGGCATCTTTCTACAGAAGATTCATCAGGGATTTTAGCTTAATAATGGCCCCCCTAACCGACTGTTTAAAGAAAGGAAATTTCAAATGGGAACATATGCAGCAACAG
AGTTTTGAAGAAATTAAAAGGAGATTAACTTCTAGCCCTATTCTTCAATTGCCAGATTTCGCATCAACATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTAGATAGCAAAGCTATTAACCGAATTACTATGAAGTATTGGTTTCCTATCCCTCGGATTGGAGATCTTTTAGACCAACTAGGCAAGGCTACGATCTTCTCAAA
GATTAATTTAAGGAGCGGCTATCACCAAATACGAATCAGACCAGGAGATGAGTGGAAGATAGCCTTCAAGACAAATGAAGGATTGTTTGAATGGTTGGTAATGCCTTTTG
GCTTATCCAATGCGCCAAGCACTTTTATGAGGTTGATGAATCAAGTACTACATCCATTCTTAAACCAGTTTATAGTGGTTTACTTTGATGACATCCTTGTGTATAGCAGC
AGTCGTGAAGACCATCTACAACACCTAAGCAAATTGTTTCAAGTTTTGACTGAAACAGAATTATATATAAATCCAAAGAAGTGCACATTTCTCACCAAGGAAATCGTCTT
TCTTGGGTTCTTGATCAAAGAAGGAAAGATAGGGATGAAACCTAAGAAAATAGAAGCTTTACAATCTTGGCCAGCACCAACATCCATCAAAGAAGTGCAAGCTTTTCTTG
GCTTGGCATCTTTCTACAGAAGATTCATCAGGGATTTTAGCTTAATAATGGCCCCCCTAACCGACTGTTTAAAGAAAGGAAATTTCAAATGGGAACATATGCAGCAACAG
AGTTTTGAAGAAATTAAAAGGAGATTAACTTCTAGCCCTATTCTTCAATTGCCAGATTTCGCATCAACATTTTAA
Protein sequenceShow/hide protein sequence
MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSS
SREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWEHMQQQ
SFEEIKRRLTSSPILQLPDFASTF