; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0062461 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0062461
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:2729361..2730467
RNA-Seq ExpressionCmc03g0062461
SyntenyCmc03g0062461
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.4e-16280.44Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GA LFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

KAA0036676.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-16280.72Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-16280.72Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-16280.72Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-16280.72Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

TrEMBL top hitse value%identityAlignment
A0A5A7T3K4 Reverse transcriptase6.9e-16380.72Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

A0A5A7U2V7 Reverse transcriptase2.6e-16280.44Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GA LFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

A0A5A7U819 Reverse transcriptase6.9e-16380.72Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

A0A5A7V4W9 Reverse transcriptase6.9e-16380.72Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

A0A5A7VNK4 Reverse transcriptase6.9e-16380.72Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKM+LQELVDKGYIR SVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLP IDDLFDQL+GATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
          F+ RYGHYEFR                                        VDRE+HEE+LRIVLQTLR++QLYAKFSKCEFWLEQVVFLGHVV AKG
Subjt:  ITFKMRYGHYEFR----------------------------------------VDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
        VSV+P+KV+ VVNWERP SATEVRSFLGL GYYR FIE+FSRL LPLT LTRKN KFEWSDK EQ FQELKKRLVTAPILALPV GKDYVIYCDASRLGL
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VLMQDGNVIAYASRQLKEHECNYPTH+LELAAVVLALKIWRHYLFGEKCHIFTDHK LKYI
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.66.6e-6233.61Show/hide
Query:  KELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAKI
        +E++ ++Q+++++G IR+S SP+ +P+  V KK         R+ IDYR+LN++T+ +++P+P++D++  +L     F+ IDL  G+HQ+++    ++K 
Subjt:  KELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAKI

Query:  TFKMRYGHYE----------------------------------------FRVDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKGV
         F  ++GHYE                                        F    + H + L +V + L    L  +  KCEF  ++  FLGHV+   G+
Subjt:  TFKMRYGHYE----------------------------------------FRVDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKGV

Query:  SVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSD-KYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
          NPEK++ +  +  PT   E+++FLGLTGYYR FI NF+ +  P+T   +KN K + ++ +Y+  F++LK  +   PIL +P   K + +  DAS + L
Subjt:  SVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSD-KYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
        G VL QDG+ ++Y SR L EHE NY T   EL A+V A K +RHYL G    I +DH+ L ++
Subjt:  GFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

P0CT34 Transposon Tf2-1 polyprotein3.1e-5131.06Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        + P +++ +   + + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N YPLP I+ L  +++G+T+F+K+DL+S YH ++VR+ D  K
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFRV----------------------------------------DREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
        + F+   G +E+ V                                            H ++++ VLQ L++  L    +KCEF   QV F+G+ +  KG
Subjt:  ITFKMRYGHYEFRV----------------------------------------DREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
         +   E +  V+ W++P +  E+R FLG   Y R FI   S+LT PL +L +K+ +++W+    Q  + +K+ LV+ P+L      K  ++  DAS + +
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGN-----VIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFG--EKCHIFTDHKRL
        G VL Q  +      + Y S ++ + + NY   + E+ A++ +LK WRHYL    E   I TDH+ L
Subjt:  GFVLMQDGN-----VIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFG--EKCHIFTDHKRL

P0CT41 Transposon Tf2-12 polyprotein3.1e-5131.06Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        + P +++ +   + + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N YPLP I+ L  +++G+T+F+K+DL+S YH ++VR+ D  K
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFRV----------------------------------------DREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
        + F+   G +E+ V                                            H ++++ VLQ L++  L    +KCEF   QV F+G+ +  KG
Subjt:  ITFKMRYGHYEFRV----------------------------------------DREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
         +   E +  V+ W++P +  E+R FLG   Y R FI   S+LT PL +L +K+ +++W+    Q  + +K+ LV+ P+L      K  ++  DAS + +
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGN-----VIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFG--EKCHIFTDHKRL
        G VL Q  +      + Y S ++ + + NY   + E+ A++ +LK WRHYL    E   I TDH+ L
Subjt:  GFVLMQDGN-----VIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFG--EKCHIFTDHKRL

P20825 Retrovirus-related Pol polyprotein from transposon 2971.1e-6135.36Show/hide
Query:  ELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAKIT
        E++ ++QE++++G IR S SP+ +P   V KK         R+ IDYR+LN++TI ++YP+P++D++  +L     F+ IDL  G+HQ+++ E  I+K  
Subjt:  ELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAKIT

Query:  FKMRYGHYE----------------------------------------FRVDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKGVS
        F  + GHYE                                        F      H   +++V   L D  L  +  KCEF  ++  FLGH+V   G+ 
Subjt:  FKMRYGHYE----------------------------------------FRVDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKGVS

Query:  VNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSD-KYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGLG
         NP KVK +V++  PT   E+R+FLGLTGYYR FI N++ +  P+T   +K  K +    +Y + F++LK  ++  PIL LP   K +V+  DAS L LG
Subjt:  VNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSD-KYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGLG

Query:  FVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI
         VL Q+G+ I++ SR L +HE NY     EL A+V A K +RHYL G +  I +DH+ L+++
Subjt:  FVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYI

Q9UR07 Transposon Tf2-11 polyprotein3.1e-5131.06Show/hide
Query:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK
        + P +++ +   + + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N YPLP I+ L  +++G+T+F+K+DL+S YH ++VR+ D  K
Subjt:  MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAK

Query:  ITFKMRYGHYEFRV----------------------------------------DREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG
        + F+   G +E+ V                                            H ++++ VLQ L++  L    +KCEF   QV F+G+ +  KG
Subjt:  ITFKMRYGHYEFRV----------------------------------------DREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKG

Query:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL
         +   E +  V+ W++P +  E+R FLG   Y R FI   S+LT PL +L +K+ +++W+    Q  + +K+ LV+ P+L      K  ++  DAS + +
Subjt:  VSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWSDKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGL

Query:  GFVLMQDGN-----VIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFG--EKCHIFTDHKRL
        G VL Q  +      + Y S ++ + + NY   + E+ A++ +LK WRHYL    E   I TDH+ L
Subjt:  GFVLMQDGN-----VIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFG--EKCHIFTDHKRL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein6.6e-2540.46Show/hide
Query:  YLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLG--HVVLAKGVSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEW
        +L +VLQ     Q YA   KC F   Q+ +LG  H++  +GVS +P K++ +V W  P + TE+R FLGLTGYYR F++N+ ++  PLT+L +KN+  +W
Subjt:  YLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLG--HVVLAKGVSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEW

Query:  SDKYEQIFQELKKRLVTAPILALPVIGKDYV
        ++     F+ LK  + T P+LALP +   +V
Subjt:  SDKYEQIFQELKKRLVTAPILALPVIGKDYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAAGCGAGCTTAAAGAATTGAAGATGCGGTTACAAGAACTGGTTGACAAGGGATACATCAGGTCTAGTGTATCGCCTTGGGGAGCACCAGTGCTATTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAATTAA
AAGGAGCAACATTATTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGATAACATTCAAAATGAGGTATGGGCATTAT
GAGTTTCGAGTTGACAGAGAAGCCCATGAGGAATATCTGAGGATTGTTCTACAGACACTACGTGATAGACAGTTGTACGCAAAGTTCAGCAAATGTGAGTTCTGGTTGGA
ACAAGTAGTTTTTTTGGGGCATGTAGTTTTAGCAAAAGGAGTTAGTGTCAATCCAGAAAAAGTGAAAGTGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTAC
GTAGTTTCCTGGGTTTAACAGGATACTATAGGCATTTTATTGAGAATTTCTCACGATTGACATTGCCTTTGACCGATTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCA
GATAAATACGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTCACAGCACCTATTCTGGCACTTCCTGTAATAGGGAAGGACTATGTGATTTATTGTGACGCTTCAAG
GCTAGGATTAGGTTTTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATAATCTTGAGCTAGCAG
CAGTTGTTTTAGCATTAAAAATCTGGAGACACTATTTGTTCGGGGAAAAGTGCCATATTTTCACAGATCATAAGAGGCTAAAGTATATTTTGATCAGAAATAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAAGCGAGCTTAAAGAATTGAAGATGCGGTTACAAGAACTGGTTGACAAGGGATACATCAGGTCTAGTGTATCGCCTTGGGGAGCACCAGTGCTATTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAATTAA
AAGGAGCAACATTATTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGATAACATTCAAAATGAGGTATGGGCATTAT
GAGTTTCGAGTTGACAGAGAAGCCCATGAGGAATATCTGAGGATTGTTCTACAGACACTACGTGATAGACAGTTGTACGCAAAGTTCAGCAAATGTGAGTTCTGGTTGGA
ACAAGTAGTTTTTTTGGGGCATGTAGTTTTAGCAAAAGGAGTTAGTGTCAATCCAGAAAAAGTGAAAGTGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTAC
GTAGTTTCCTGGGTTTAACAGGATACTATAGGCATTTTATTGAGAATTTCTCACGATTGACATTGCCTTTGACCGATTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCA
GATAAATACGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTCACAGCACCTATTCTGGCACTTCCTGTAATAGGGAAGGACTATGTGATTTATTGTGACGCTTCAAG
GCTAGGATTAGGTTTTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATAATCTTGAGCTAGCAG
CAGTTGTTTTAGCATTAAAAATCTGGAGACACTATTTGTTCGGGGAAAAGTGCCATATTTTCACAGATCATAAGAGGCTAAAGTATATTTTGATCAGAAATAGCTAA
Protein sequenceShow/hide protein sequence
MAPSELKELKMRLQELVDKGYIRSSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPHIDDLFDQLKGATLFSKIDLRSGYHQLKVRESDIAKITFKMRYGHY
EFRVDREAHEEYLRIVLQTLRDRQLYAKFSKCEFWLEQVVFLGHVVLAKGVSVNPEKVKVVVNWERPTSATEVRSFLGLTGYYRHFIENFSRLTLPLTDLTRKNAKFEWS
DKYEQIFQELKKRLVTAPILALPVIGKDYVIYCDASRLGLGFVLMQDGNVIAYASRQLKEHECNYPTHNLELAAVVLALKIWRHYLFGEKCHIFTDHKRLKYILIRNS