; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0062481 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0062481
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:2744571..2745470
RNA-Seq ExpressionCmc03g0062481
SyntenyCmc03g0062481
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-15693.13Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPIAYESRKLNAA+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNVMNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-15693.13Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPIAYESRKLNAA+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNVMNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-15693.13Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPIAYESRKLNAA+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNVMNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-15793.47Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQAAFD LKQAMMEGPLL IAD TKPFEVE DAS+YALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPI YESRKLN A+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGS+NQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDH AQNVMNLVKAGKTR FWVEEDLLVTK  RLYVPRAGDLRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]4.8e-15793.47Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQAAFD LKQA+MEGPLL IAD TKPFEVE DASDYALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPIAYESRKLNAA+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNVMNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

TrEMBL top hitse value%identityAlignment
A0A5A7UXR6 Reverse transcriptase6.7e-15793.13Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPIAYESRKLNAA+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNVMNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

A0A5D3BQE4 Reverse transcriptase1.4e-15793.47Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQAAFD LKQAMMEGPLL IAD TKPFEVE DAS+YALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPI YESRKLN A+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGS+NQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDH AQNVMNLVKAGKTR FWVEEDLLVTK  RLYVPRAGDLRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

A0A5D3BRZ6 Reverse transcriptase6.7e-15793.13Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPIAYESRKLNAA+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNVMNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

A0A5D3C4R1 Reverse transcriptase6.7e-15793.13Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPIAYESRKLNAA+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNVMNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

A0A5D3C9P8 Reverse transcriptase2.3e-15793.47Show/hide
Query:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG
        MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPECQAAFD LKQA+MEGPLL IAD TKPFEVE DASDYALGG
Subjt:  MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
        VLLQNGHPIAYESRKLNAA+RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS
Subjt:  VLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALS

Query:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP
        RKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNVMNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Subjt:  RKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.4e-3941.92Show/hide
Query:  KIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWN-WDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLL
        KI AI+ + +P    E+++FLGL  YYR+F+  F+  A P+T+ LKK++  +  +PE  +AF  LK  + E P+L + D TK F +  DASD ALG VL 
Subjt:  KIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWN-WDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLL

Query:  QNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSR
        Q+GHP++Y SR LN  +  ++  EKE+LA+V   + +R YLLG  F + +D+      +      SK  RW+  L+EFDF+ ++ KG  N  ADALSR
Subjt:  QNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSR

P0CT34 Transposon Tf2-1 polyprotein6.3e-3540.29Show/hide
Query:  IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQN
        I  +  W  PK+  ELR FLG  NY R+F+   S+   PL  LLKKDV W W P    A +++KQ ++  P+L   D +K   +E DASD A+G VL Q 
Subjt:  IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQN

Query:  G-----HPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQEFLAEFDFEFEHKKGSSNQA
              +P+ Y S K++ A+  ++VS+KEMLA++  L+ WR YL  +   F + TD+       T   +P+   + ARWQ FL +F+FE  ++ GS+N  
Subjt:  G-----HPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQEFLAEFDFEFEHKKGSSNQA

Query:  ADALSR
        ADALSR
Subjt:  ADALSR

P0CT35 Transposon Tf2-2 polyprotein6.3e-3540.29Show/hide
Query:  IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQN
        I  +  W  PK+  ELR FLG  NY R+F+   S+   PL  LLKKDV W W P    A +++KQ ++  P+L   D +K   +E DASD A+G VL Q 
Subjt:  IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQN

Query:  G-----HPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQEFLAEFDFEFEHKKGSSNQA
              +P+ Y S K++ A+  ++VS+KEMLA++  L+ WR YL  +   F + TD+       T   +P+   + ARWQ FL +F+FE  ++ GS+N  
Subjt:  G-----HPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQEFLAEFDFEFEHKKGSSNQA

Query:  ADALSR
        ADALSR
Subjt:  ADALSR

P0CT41 Transposon Tf2-12 polyprotein6.3e-3540.29Show/hide
Query:  IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQN
        I  +  W  PK+  ELR FLG  NY R+F+   S+   PL  LLKKDV W W P    A +++KQ ++  P+L   D +K   +E DASD A+G VL Q 
Subjt:  IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQN

Query:  G-----HPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQEFLAEFDFEFEHKKGSSNQA
              +P+ Y S K++ A+  ++VS+KEMLA++  L+ WR YL  +   F + TD+       T   +P+   + ARWQ FL +F+FE  ++ GS+N  
Subjt:  G-----HPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQEFLAEFDFEFEHKKGSSNQA

Query:  ADALSR
        ADALSR
Subjt:  ADALSR

Q9UR07 Transposon Tf2-11 polyprotein6.3e-3540.29Show/hide
Query:  IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQN
        I  +  W  PK+  ELR FLG  NY R+F+   S+   PL  LLKKDV W W P    A +++KQ ++  P+L   D +K   +E DASD A+G VL Q 
Subjt:  IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQN

Query:  G-----HPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQEFLAEFDFEFEHKKGSSNQA
              +P+ Y S K++ A+  ++VS+KEMLA++  L+ WR YL  +   F + TD+       T   +P+   + ARWQ FL +F+FE  ++ GS+N  
Subjt:  G-----HPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQEFLAEFDFEFEHKKGSSNQA

Query:  ADALSR
        ADALSR
Subjt:  ADALSR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.1e-1343.33Show/hide
Query:  EEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEI
        +  K+ A+  W  PK+ +ELR FLGL  YYRRFVK + K   PLTELLKK+    W      AF  LK A+   P+L + D   PF   +
Subjt:  EEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGGGTAGTGCCGAAATCAATCTCGGAGTTACGCTCCTTCCTCGGGCTAGCAAATTACTATCGTCGATTTGTCAAGGG
ATTCTCCAAACGAGCAAGCCCACTGACTGAACTACTGAAAAAAGACGTTTACTGGAATTGGGACCCCGAGTGCCAAGCCGCCTTCGACGACCTAAAACAAGCCATGATGG
AGGGGCCACTTCTCATGATTGCGGATGCGACCAAACCTTTCGAAGTTGAGATAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCA
TATGAAAGTCGAAAGTTGAATGCAGCCAAAAGGAGGTTTACTGTGTCCGAGAAAGAAATGCTCGCAGTTGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTC
GTCATTTGTAGTGAAGACGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAACAAGCAAGATGGCAGGAATTTCTAGCAGAGTTCGACTTCG
AATTTGAACACAAGAAGGGGTCGAGCAACCAGGCTGCTGATGCCCTAAGTCGAAAACAAGAACATGCAGCCATATGCCTGTTAGCTCACCTCCGGGGAAGCGAGATTGGT
GGGTCGGTTAGAGACACCTTAAGAGAGTTCCTACAGAAAGATCATGTCGCACAGAATGTCATGAATTTAGTGAAGGCGGGCAAAACACGACATTTTTGGGTCGAGGAAGA
CTTGTTAGTCACAAAGGACATTCGACTATATGTTCCTAGAGCAGGGGACTTAAGGAAGAAATTGTTGTATGAGTGTCACGACACTCTATGGGCTGGCCATCCCGATGGCA
GCGGACGTACGCCTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGGGTAGTGCCGAAATCAATCTCGGAGTTACGCTCCTTCCTCGGGCTAGCAAATTACTATCGTCGATTTGTCAAGGG
ATTCTCCAAACGAGCAAGCCCACTGACTGAACTACTGAAAAAAGACGTTTACTGGAATTGGGACCCCGAGTGCCAAGCCGCCTTCGACGACCTAAAACAAGCCATGATGG
AGGGGCCACTTCTCATGATTGCGGATGCGACCAAACCTTTCGAAGTTGAGATAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCA
TATGAAAGTCGAAAGTTGAATGCAGCCAAAAGGAGGTTTACTGTGTCCGAGAAAGAAATGCTCGCAGTTGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTC
GTCATTTGTAGTGAAGACGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAACAAGCAAGATGGCAGGAATTTCTAGCAGAGTTCGACTTCG
AATTTGAACACAAGAAGGGGTCGAGCAACCAGGCTGCTGATGCCCTAAGTCGAAAACAAGAACATGCAGCCATATGCCTGTTAGCTCACCTCCGGGGAAGCGAGATTGGT
GGGTCGGTTAGAGACACCTTAAGAGAGTTCCTACAGAAAGATCATGTCGCACAGAATGTCATGAATTTAGTGAAGGCGGGCAAAACACGACATTTTTGGGTCGAGGAAGA
CTTGTTAGTCACAAAGGACATTCGACTATATGTTCCTAGAGCAGGGGACTTAAGGAAGAAATTGTTGTATGAGTGTCACGACACTCTATGGGCTGGCCATCCCGATGGCA
GCGGACGTACGCCTTGCTGA
Protein sequenceShow/hide protein sequence
MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIA
YESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIG
GSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHPDGSGRTPC