CuGenDBv2

Gene ID	Cmc03g0062491
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr03:2745622..2746134
RNA-Seq Expression	Cmc03g0062491
Synteny	Cmc03g0062491
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0049572.1 reverse transcriptase [Cucumis melo var. makuwa]

3.8e-66

72.97

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDR+SKYATFIPTTKQCS EMT QLFFKHVVKLWGVPTSIVSDRD RFIGSFWT LFSFLGTSLNISSSYHPQTDGQTERF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDEAR---------------LRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT
        NCMLEEYL HFVNARQKNWVQLLD A+                 +  G       L+  P  G+  +   SRR GNRQTT PERT
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDEAR---------------LRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT

KAA0049573.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-82

87.36

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Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDRFSKYATFIPTTKQCS EMT QLFFKHVVKLWGVPTSIV DRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQT+RF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLD------------EARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT
        NCMLEEYLR+FVNARQKNWVQLLD            EA LRLFLGGNQYCHTLLIIPLQGRTL  SISRRS NRQTT PERT
Subjt:  NCMLEEYLRHFVNARQKNWVQLLD------------EARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT

KAA0052269.1 reverse transcriptase [Cucumis melo var. makuwa]

7.1e-65

96.85

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDRFSKYATFIPTTKQCSAEMT QLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDEAR
        NCMLEEYLRHFVNARQKNWVQLLD A+
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDEAR

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]

7.1e-65

96.85

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Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDRFSKYATFIPTTKQCSAEMT QLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDEAR
        NCMLEEYLRHFVNARQKNWVQLLD A+
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDEAR

TYK15933.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-82

87.36

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Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDRFSKYATFIPTTKQCS EMT QLFFKHVVKLWGVPTSIV DRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQT+RF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLD------------EARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT
        NCMLEEYLR+FVNARQKNWVQLLD            EA LRLFLGGNQYCHTLLIIPLQGRTL  SISRRS NRQTT PERT
Subjt:  NCMLEEYLRHFVNARQKNWVQLLD------------EARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U161 Reverse transcriptase

6.2e-83

87.36

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDRFSKYATFIPTTKQCS EMT QLFFKHVVKLWGVPTSIV DRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQT+RF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLD------------EARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT
        NCMLEEYLR+FVNARQKNWVQLLD            EA LRLFLGGNQYCHTLLIIPLQGRTL  SISRRS NRQTT PERT
Subjt:  NCMLEEYLRHFVNARQKNWVQLLD------------EARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT

A0A5A7UFL8 Reverse transcriptase

3.4e-65

96.85

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDRFSKYATFIPTTKQCSAEMT QLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDEAR
        NCMLEEYLRHFVNARQKNWVQLLD A+
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDEAR

A0A5D3BQE4 Reverse transcriptase

3.4e-65

96.85

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDRFSKYATFIPTTKQCSAEMT QLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDEAR
        NCMLEEYLRHFVNARQKNWVQLLD A+
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDEAR

A0A5D3CVP4 Reverse transcriptase

6.2e-83

87.36

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDRFSKYATFIPTTKQCS EMT QLFFKHVVKLWGVPTSIV DRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQT+RF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLD------------EARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT
        NCMLEEYLR+FVNARQKNWVQLLD            EA LRLFLGGNQYCHTLLIIPLQGRTL  SISRRS NRQTT PERT
Subjt:  NCMLEEYLRHFVNARQKNWVQLLD------------EARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT

A0A5D3CWN4 Reverse transcriptase

1.8e-66

72.97

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFITHLPKVGDFE ILVIIDR+SKYATFIPTTKQCS EMT QLFFKHVVKLWGVPTSIVSDRD RFIGSFWT LFSFLGTSLNISSSYHPQTDGQTERF
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDEAR---------------LRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT
        NCMLEEYL HFVNARQKNWVQLLD A+                 +  G       L+  P  G+  +   SRR GNRQTT PERT
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDEAR---------------LRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

4.7e-19

38.33

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFIT LP+   +  + V++DRFSK A  +P TK  +AE T ++F + V+  +G P  I++D D  F    W +        +  S  Y PQTDGQTER 
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWV
        N  +E+ LR   +     WV
Subjt:  NCMLEEYLRHFVNARQKNWV

P0CT35 Transposon Tf2-2 polyprotein

4.7e-19

38.33

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Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFIT LP+   +  + V++DRFSK A  +P TK  +AE T ++F + V+  +G P  I++D D  F    W +        +  S  Y PQTDGQTER 
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWV
        N  +E+ LR   +     WV
Subjt:  NCMLEEYLRHFVNARQKNWV

P0CT36 Transposon Tf2-3 polyprotein

4.7e-19

38.33

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFIT LP+   +  + V++DRFSK A  +P TK  +AE T ++F + V+  +G P  I++D D  F    W +        +  S  Y PQTDGQTER 
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWV
        N  +E+ LR   +     WV
Subjt:  NCMLEEYLRHFVNARQKNWV

P0CT41 Transposon Tf2-12 polyprotein

4.7e-19

38.33

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFIT LP+   +  + V++DRFSK A  +P TK  +AE T ++F + V+  +G P  I++D D  F    W +        +  S  Y PQTDGQTER 
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWV
        N  +E+ LR   +     WV
Subjt:  NCMLEEYLRHFVNARQKNWV

Q9UR07 Transposon Tf2-11 polyprotein

4.7e-19

38.33

Show/hide

Query:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF
        MDFIT LP+   +  + V++DRFSK A  +P TK  +AE T ++F + V+  +G P  I++D D  F    W +        +  S  Y PQTDGQTER 
Subjt:  MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERF

Query:  NCMLEEYLRHFVNARQKNWV
        N  +E+ LR   +     WV
Subjt:  NCMLEEYLRHFVNARQKNWV

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACTTTATCACCCATCTTCCTAAGGTAGGCGACTTTGAAGTCATCTTAGTCATCATTGATCGTTTTTCAAAGTACGCCACCTTCATCCCCACCACCAAGCAG
TGTTCAGCAGAAATGACAGTTCAATTATTCTTTAAGCATGTTGTTAAGTTGTGGGGAGTCCCGACAAGTATAGTGAGTGACAGGGATGGTAGATTCATTGGCTCC
TTCTGGACGGAGTTATTTTCCTTCTTGGGGACAAGTCTGAACATATCCTCAAGCTACCACCCTCAAACTGACGGCCAGACTGAGCGATTCAACTGCATGCTCGAG
GAATACTTACGCCATTTTGTAAACGCAAGGCAAAAGAACTGGGTCCAGTTGTTGGACGAAGCCCGTTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACC
TTGTTGATCATCCCTTTACAGGGAAGAACCCTCAAGCCCTCAATTTCACGAAGGAGTGGAAACAGACAAACGACATTGCCCGAGCGTACTTAG

mRNA sequence

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Protein sequence

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MDFITHLPKVGDFEVILVIIDRFSKYATFIPTTKQCSAEMTVQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNCMLE
EYLRHFVNARQKNWVQLLDEARLRLFLGGNQYCHTLLIIPLQGRTLKPSISRRSGNRQTTLPERT

Cmc03g0062491 (gene) of Melon (Charmono) v1.1 genome