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Cmc03g0062611 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0062611
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:2884196..2888157
RNA-Seq ExpressionCmc03g0062611
SyntenyCmc03g0062611
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036204.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-2584.51Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAPA+LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVTVKN+YP  RID+LFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
KAA0042118.1 pol protein [Cucumis melo var. makuwa]1.0e-2583.1Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAP +LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVT+KN+YP  RIDNLFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
KAA0046180.1 gag protease polyprotein [Cucumis melo var. makuwa]1.0e-2584.51Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAPA+LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVTVKN+YP  RID+LFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
TYK08816.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-2584.51Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAPA+LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVTVKN+YP  RID+LFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
TYK18061.1 pol protein [Cucumis melo var. makuwa]1.0e-2583.1Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAP +LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVT+KN+YP  RIDNLFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
TrEMBL top hitse value%identityAlignment
A0A5A7SWF6 Reverse transcriptase5.0e-2684.51Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAPA+LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVTVKN+YP  RID+LFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
A0A5A7SY46 Ty3-gypsy retrotransposon protein5.0e-2684.51Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAPA+LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVTVKN+YP  RID+LFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
A0A5A7TH12 Reverse transcriptase5.0e-2683.1Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAP +LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVT+KN+YP  RIDNLFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
A0A5A7TSQ1 Gag protease polyprotein5.0e-2684.51Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAPA+LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVTVKN+YP  RID+LFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
A0A5D3D1D7 Reverse transcriptase5.0e-2683.1Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
        MAP +LKELK QLQELLDKGFI+ SVSPW  PVLFVKKKDGSMHLCIDY ELNKVT+KN+YP  RIDNLFD
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD
SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.5e-0634.78Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
        + P K++ +  ++ + L  G I+ S +  A PV+FV KK+G++ + +DY  LNK    N YP   I+ L
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
P0CT41 Transposon Tf2-12 polyprotein1.5e-0634.78Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
        + P K++ +  ++ + L  G I+ S +  A PV+FV KK+G++ + +DY  LNK    N YP   I+ L
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.3e-1149.21Show/hide
Query:  KELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
        +E+   +Q+LLD  FI  S SP ++PV+ V KKDG+  LC+DY  LNK T+ + +P  RIDNL
Subjt:  KELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
Q99315 Transposon Ty3-G Gag-Pol polyprotein3.3e-1149.21Show/hide
Query:  KELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
        +E+   +Q+LLD  FI  S SP ++PV+ V KKDG+  LC+DY  LNK T+ + +P  RIDNL
Subjt:  KELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
Q9UR07 Transposon Tf2-11 polyprotein1.5e-0634.78Show/hide
Query:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
        + P K++ +  ++ + L  G I+ S +  A PV+FV KK+G++ + +DY  LNK    N YP   I+ L
Subjt:  MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNL
Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein6.9e-0454.55Show/hide
Query:  LKGQLQELLDKGFIQSSVSPWATPVLFVKKKDG
        LK  L E+L+   IQ S+SP+++PVL V+KKDG
Subjt:  LKGQLQELLDKGFIQSSVSPWATPVLFVKKKDG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCCAGCAAAGTTGAAAGAGCTGAAAGGGCAGTTGCAGGAGTTGCTTGACAAAGGCTTCATTCAATCGAGTGTGTCACCTTGGGCTACACCAGTTTTGTTTGTTAA
GAAGAAAGATGGATCGATGCACTTATGTATTGACTATATAGAGTTGAATAAGGTGACTGTTAAAAATAAATACCCTTTTTCGAGGATTGATAATCTATTTGACTAG
mRNA sequenceShow/hide mRNA sequence
CTTCTCTCCACACGCCCTTTCTCTCTCTCCACCCTCTCTTCCTCTTTCCTCCCATTTTCTCTCTGCCATTCTCTCTCTTTGCATGTTCACCGCACGAAAAAAAAATTCCC
CTCTTTCTCTCTTCCTCTCTCCGTCGTTCTCTCTTTCTTTCTCTCTACCACCGGACAACGAAAAGAAAAAGGGTTTCCTCTTCCTCTCAGCTGGGGACTCTCTGTTCTCC
CAAATACGAAGAGAAAAAAACACAAATTTGAGGAGGAGACGAACCCAGAGAAATGGTGAAATAGAAGTGTTTTGATTTTTTTTCTTAGCCTCTTCTTCCTTATTTATAAA
AGAGTGAAGAGTATCAAATCTCTAACATTCTCAACAAATCTACCAATGGCAATTGAGATTTATTAGACTTCGAGTTGAAACCCCTGTTCTTTTTTCTTTATTTCAAAAAA
TGAGAAATATATTACAGCTTCCATACTCTTACGAACCATAACTAGGACCTCATGGCTTCTTGGGTGATAGTAAGGGTGCTTTCAAAAGTATTGACGTCGTCTTAGAGCTT
GGAAACTTCCAATTCATTCCTGTTTATGGCCTCATTTTTCTCATGAGATAAGATCGATATAAGTGTTCAGACTCAGTATTTATACTCTGAAGTCTGCTCTCTAGTTCCTT
CTTTTCCAAAGATAATTATGCAACCTTCTCCTGAATAACTTTGGCATCTTCTTGTAGTTGGTCCATCAAAGCTAAGGTTTCTTTGATGGCAGATATCTTCTCGTTTAATT
GATGAGCTTTATAATTTGTCGACAACAATTGTGCAGAAATGAAGAATGTACATCATTGAAGTTTTCTACCTTCTTAAGGTAGCTATTCAAATATTCTTCAAGAAGAGTAA
GGTTGTCTGCATGGAGCTTTGCAATCCCCAAAAGTACCGTTTATTATTTCTTGTCTAAGTCTTGGGATATATTCAAAATGAGTCACATGATCTTGTCTTGAATGTCCTAT
CACATGCATAAAGTCGTTTTCTGAAAGAAGTTTGAAACTACCTTTTCACCAATCCACTGAGAAGGCTCATTGTGTCTTGCTATCAACTTTTTAGAAGTGTCTAAAGGCGA
CTTGAAAATCTTGAGAGAAGCATGTGTGAATATAACCTTCTCTAAAGATGCTTTAGGGCAGGAATCTCTTTTGGATGGAGGATTCAAATTTTTGATATCTTTTCCATTCA
ATTTCATCTTGCCTCGATGAATCTCCTCGAGAAGAGCACAAGGACGTAAGGATTGTTTAGCTGGTTTGACAACTAATGTTTTTCAAGTACCAACTTCTTCAATGACTGAA
TCCACAACATAAGGGTTGAAATTAATTCGTCTCCTCCTCAAACTTAAGTCAAGGATTGAAGAAAAATTCTCCTCAAACCTTGGACATTTTAAAAAAAAAATTATCCTCAA
ATCTTAGAGAATTTTTCTATAAAAAAATTGAAGCAAAGAATAAAAAAAATTCTCAAATCATTTTTATGTTGTTGGATAATTTTTTTTTATCCAAATCATAGTTTGTTCCA
AATTAAGTAAACAAAAGGCAATTTGCCAATTTTATCAATTTTAAGTCTCATTTTCCTAACTAAATTCATAAAAAAAAAAATCCAATTTCATCAAAATTTTATTTCTTAGC
CATATTCCAAATGATTCTTTTAAAAAATAAAATAATTATGAATTAAATTCAAAATTCACTACAAATTAACTTTGGATTGTATTCCAAGCTTCATAGAGCATTTTAATCAA
ACTTATGTCTAAATGCAAAGTGTGATTAATTTGACATATTAGCTTGTATATACATTTTCAGCTTATTGTTTTTTAGATTCACCTAATCATACACATGCACGAATCTCGAA
AAGAGTTCTTTGAAAATCTCAAGCGAGTAATGCTAATTATTCCTAAGCTTACCTTACTTTGACAGATGCACAATGTAAGCTTGATTTAGTTAATTAAGGTGAAAATAAAA
GTCTTGCTAGTTTATAAACCCTTTTTAAGATATACCATGTGTAATGACCCAACTTTTCTAACTAAGTTGAGGCAGTTACAGCTGGTAGCAGAGCCTAAGTTTTAGGTTTT
GCTGACTGACTTATGATGTAAGTCTATGTTTTGTGTTCTTATGGCTAGAACGAGCCTTTGCCACTTGTCAGGTACGCTTTCATGATTTATATATATGATTTTATATGTAT
GACCTTACCTAAGTTAAACTGCATGAAGTGATCTATTGTTTAAGACTAAAGGAGTTATTGGTGGTTATTAGGAAAATGCTGCCAAGAAGAGGTGCATGTAGGATGGTCGG
GGAGGTCGAGGAAGGGGAGCAGGATGGTCAGAGAGGTCGAGGAAGAGGAGTAGGATGTAACCAACCTGAAGGTCAGCCTGCAGTACAAGCTGCCAACTCTACTGTACCAA
TCTCCCATGCGGACCTCGCTGCAATGAAGTAGAGGTTCAGATACTTATTGATGCAGACACGAGCACCTTAGCAGCCTACTCTGCCAACTTTTGTTAAGACCCCAATTGCA
CCTATCTAGGATTAATTGAACCTCAAAGTGTGCGAGATAAGCTGTCTAAAGAGGCTAAACACTTGAGGGACTTCAGGAAGTACAACCCTAGACGTTCGATGGATCCTTAG
AATACCCCACCAAGGCATAGATGTGGTTAAATTCTATAGAGACTATCTTTCTTTATATGTTTCCCTAACAACCAGAGGTTCAGTGTGCCGCTTTCTTATTGAGAGATAGA
GGTACAGCCTGGTGAGAGTCTACTGAGAGGATGTTGGTTGGCGATATAAACAAGATTACCTGGGAACAGTTCAAGGAGAATTTTTATGCTAAGTTATTCTTTGCTAGCCT
GAAAGATGCAAAACGTTAAGAATTTCTAGAACTGTAGCAAAGCAATATGATTGTGGAGTAGTATGATTCAAAATTCGACATGTTGTCTCGCTTTGCTCCTAAGATGGTAA
TGACTAAGGTTGCCAGGACCGACCAGTTTGTTAGAGGTCTCAAGTTAGATCTTTAGGGTTTCATTCGAGCCTTCAGGCTAGCCACGAATGTTGATGCACTTTGCCTAGCA
GTGGATATGAGTTTACATGAGAGGGCTGATTCATCCAAGACTGTAAGAAAAGGGTCGATCTTAAGATAGAAGAGGAAGGCTGAGCAGCAGCCTACTGTGGTGTCGCAGAG
GAACTTAGAAGTAAAGCCCCTAGATTACGTTTTATAAGTGTCTACTCCATCTCGGGAGGTTATGTTGTCAAAAGAAAAGATAAAAGCATGCTAGATTGAGGTAACGAGTC
ATGTAATAGATGTAACTTTATTGGTTCTAGATATATGTGATTTTGATGTAATTCTAGATATGGATTGACTAGCTGCTAATCATGTTAGTATAGATTGTTCCCGTAAGGAG
GTAGTATTTAATCCTTCTACAGGAACTAGTTTTAAGTTTAAATGGGTAGGAACAACAATATTACCTAAAGTGATCTCAACTATGAAAGCCAGCAAGCTACTTAACCAGGG
TACTTGAAGTATCTTGGCCAGTGTGGTGGATACTAGAGAGGTTGATGTTTCTTCGACGTTGGAACCTGTGGTGAGGGATTATCTAGATGTTTTTTCTAAAGAACTTCCAA
GATTAACCCCTCAAAGGGAGATTGATTTTGCTATTGAATTGGAGCCTGATACTGTTCTTATATCTAAAGCTCCATACATAATGGCCCCAGCAAAGTTGAAAGAGCTGAAA
GGGCAGTTGCAGGAGTTGCTTGACAAAGGCTTCATTCAATCGAGTGTGTCACCTTGGGCTACACCAGTTTTGTTTGTTAAGAAGAAAGATGGATCGATGCACTTATGTAT
TGACTATATAGAGTTGAATAAGGTGACTGTTAAAAATAAATACCCTTTTTCGAGGATTGATAATCTATTTGACTAGTTGCAGGGAGCCACAGTTTTCTCTCAAATCAGCC
TT
Protein sequenceShow/hide protein sequence
MAPAKLKELKGQLQELLDKGFIQSSVSPWATPVLFVKKKDGSMHLCIDYIELNKVTVKNKYPFSRIDNLFD