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Cmc03g0062631 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0062631
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr03:2903718..2904020
RNA-Seq ExpressionCmc03g0062631
SyntenyCmc03g0062631
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036888.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.8e-3981Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        +IGSLLYLTTS+PDIAYA+GICAR+Q+D   SHLEAVKRI+K +HGTSDFGIL SYDT SILVGY DADW   SDDRKSTSGGCF LGNNLISW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

KAA0054623.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-3881Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        MIGS LYL  SRPDIAYAV ICAR+QSDPC SHL AVKRIIK +HGT+DFGIL SYDT S LVGY DADW  S+DDRKSTSGGCFFLGNNL+SW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

KAA0068014.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]8.8e-3980Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        +I SLL+LT SRPDIAYAVGIC R+Q+DP +SHLEAVKRI+K +HGTSDFGIL SYDT SILVGY DADW  S+DDRK+TSGGCFFLGNNLISW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

TYJ96683.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.8e-3981Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        +IGSLLYLTTS+PDIAYA+GICAR+Q+D   SHLEAVKRI+K +HGTSDFGIL SYDT SILVGY DADW   SDDRKSTSGGCF LGNNLISW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

TYK18114.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]8.8e-3980Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        +I SLL+LT SRPDIAYAVGIC R+Q+DP +SHLEAVKRI+K +HGTSDFGIL SYDT SILVGY DADW  S+DDRK+TSGGCFFLGNNLISW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

TrEMBL top hitse value%identityAlignment
A0A5A7T284 Putative mitochondrial protein4.2e-3981Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        +IGSLLYLTTS+PDIAYA+GICAR+Q+D   SHLEAVKRI+K +HGTSDFGIL SYDT SILVGY DADW   SDDRKSTSGGCF LGNNLISW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

A0A5A7VKR7 Putative gag-pol polyprotein4.2e-3980Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        +I SLL+LT SRPDIAYAVGIC R+Q+DP +SHLEAVKRI+K +HGTSDFGIL SYDT SILVGY DADW  S+DDRK+TSGGCFFLGNNLISW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

A0A5D3BBJ2 Putative mitochondrial protein4.2e-3981Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        +IGSLLYLTTS+PDIAYA+GICAR+Q+D   SHLEAVKRI+K +HGTSDFGIL SYDT SILVGY DADW   SDDRKSTSGGCF LGNNLISW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

A0A5D3D3G3 Putative gag-pol polyprotein4.2e-3980Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        +I SLL+LT SRPDIAYAVGIC R+Q+DP +SHLEAVKRI+K +HGTSDFGIL SYDT SILVGY DADW  S+DDRK+TSGGCFFLGNNLISW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

A0A5D3DWA8 Putative mitochondrial protein5.5e-3981Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN
        MIGS LYL  SRPDIAYAV ICAR+QSDPC SHL AVKRIIK +HGT+DFGIL SYDT S LVGY DADW  S+DDRKSTSGGCFFLGNNL+SW SKKQN
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1615.2e-1842.42Show/hide
Query:  IGSLLYL-TTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ
        +G+++YL   +RPD+A AVG+ ++F SDPC +H +A+KR+++ +  T  +G+  +    + LVGY DADW    + R+STSG  F L    +SW SKKQ
Subjt:  IGSLLYL-TTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.0e-1343.43Show/hide
Query:  IGSLLY-LTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ
        +GSL+Y +  +RPDIA+AVG+ +RF  +P   H EAVK I++ + GT+    L    ++ IL GY DAD     D+RKS++G  F      ISW SK Q
Subjt:  IGSLLY-LTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ

P92519 Uncharacterized mitochondrial protein AtMg008103.2e-1536.36Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ
        ++G+L YLT +RPDI+YAV I  +   +P ++  + +KR+++ + GT   G+    ++   +  + D+DW   +  R+ST+G C FLG N+ISW +K+Q
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-1644.44Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ
        ++GSL YL  +RPDI+YAV   ++F   P   HL+A+KRI++ + GT + GI         L  Y DADW    DD  ST+G   +LG++ ISW SKKQ
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.1e-1541.41Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ
        ++GSL YL  +RPD++YAV   +++   P   H  A+KR+++ + GT D GI         L  Y DADW   +DD  ST+G   +LG++ ISW SKKQ
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 88.5e-1642.42Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ
        +IG L+YL  +R DI++AV   ++F   P ++H +AV +I+  I GT   G+  S      L  + DA + S  D R+ST+G C FLG +LISW SKKQ
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ

ATMG00240.1 Gag-Pol-related retrotransposon family protein1.0e-0832.95Show/hide
Query:  LYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGC-----FFLG
        +YLT +RPD+ +AV   ++F S    + ++AV +++  + GT   G+  S  ++  L  + D+DW S  D R+S +G C     +FLG
Subjt:  LYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGC-----FFLG

ATMG00810.1 DNA/RNA polymerases superfamily protein2.2e-1636.36Show/hide
Query:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ
        ++G+L YLT +RPDI+YAV I  +   +P ++  + +KR+++ + GT   G+    ++   +  + D+DW   +  R+ST+G C FLG N+ISW +K+Q
Subjt:  MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGGAGTCTGTTATATTTAACTACCAGCCGACCTGACATTGCCTATGCTGTTGGAATATGTGCTCGATTTCAGTCTGATCCTTGTATTTCACATTTAGAAGCAGT
CAAAAGGATAATTAAGGATATCCACGGAACAAGTGATTTTGGAATTCTAAATTCCTATGATACAAATTCTATCTTGGTTGGATATTATGATGCAGATTGGGTGAGCTCTT
CTGATGACAGGAAAAGCACATCTGGAGGATGTTTTTTTCTTGGTAACAATCTTATCTCTTGGCTTAGTAAGAAACAAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCGGGAGTCTGTTATATTTAACTACCAGCCGACCTGACATTGCCTATGCTGTTGGAATATGTGCTCGATTTCAGTCTGATCCTTGTATTTCACATTTAGAAGCAGT
CAAAAGGATAATTAAGGATATCCACGGAACAAGTGATTTTGGAATTCTAAATTCCTATGATACAAATTCTATCTTGGTTGGATATTATGATGCAGATTGGGTGAGCTCTT
CTGATGACAGGAAAAGCACATCTGGAGGATGTTTTTTTCTTGGTAACAATCTTATCTCTTGGCTTAGTAAGAAACAAAACTAA
Protein sequenceShow/hide protein sequence
MIGSLLYLTTSRPDIAYAVGICARFQSDPCISHLEAVKRIIKDIHGTSDFGILNSYDTNSILVGYYDADWVSSSDDRKSTSGGCFFLGNNLISWLSKKQN