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Cmc03g0062771 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0062771
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr03:3074487..3075504
RNA-Seq ExpressionCmc03g0062771
SyntenyCmc03g0062771
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025494.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.9e-2273.91Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
        YIKV++P S++A+YRT KGEVATNVLGVCD KGDF+YVL GW+ S A+SCILRD +SR NGLKVPKD Y
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
KAA0055437.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.6e-2275.36Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
        YIKV++  S+QA+YRTHKGE+ATNVLGVCD KGDF+YVLVGW+ SIA+S ILRD ISR NGLKVPK  Y
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
KAA0064261.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.9e-2273.91Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
        YIKV++P S++A+YRT KGEVATNVLGVCD KGDF+YVL GWE S+A+SCIL D ISR NGLKVPK  Y
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
TYK02751.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.8e-2172.46Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
        YIKV++P S++A+YRTHKGEVATNVLG+CD KGDF+YVL GWE S A+S IL D ISR NGLKVPK  Y
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
TYK19875.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-2169.86Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNYLWHC
        YIKV++P S+QA+YRTHKGEVATNVL VCD KGDF+YV  GW+ S A+S ILRD ISR N LKV KD+Y  HC
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNYLWHC
TrEMBL top hitse value%identityAlignment
A0A5A7SIN0 Putative nuclease HARBI19.3e-2373.91Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
        YIKV++P S++A+YRT KGEVATNVLGVCD KGDF+YVL GW+ S A+SCILRD +SR NGLKVPKD Y
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
A0A5A7ULI4 Putative nuclease HARBI12.7e-2275.36Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
        YIKV++  S+QA+YRTHKGE+ATNVLGVCD KGDF+YVLVGW+ SIA+S ILRD ISR NGLKVPK  Y
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
A0A5D3BSN2 Putative nuclease HARBI11.3e-2172.46Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
        YIKV++P S++A+YRTHKGEVATNVLG+CD KGDF+YVL GWE S A+S IL D ISR NGLKVPK  Y
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
A0A5D3D546 Putative nuclease HARBI19.3e-2373.91Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
        YIKV++P S++A+YRT KGEVATNVLGVCD KGDF+YVL GWE S+A+SCIL D ISR NGLKVPK  Y
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNY
A0A5D3D8F7 Retrotransposon protein1.3e-2169.86Show/hide
Query:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNYLWHC
        YIKV++P S+QA+YRTHKGEVATNVL VCD KGDF+YV  GW+ S A+S ILRD ISR N LKV KD+Y  HC
Subjt:  YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNYLWHC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28950.1 unknown protein1.1e-0734.38Show/hide
Query:  IPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISR-LNGLKVPKDN
        +   +   +R  KG+++ N+L  C+   +F+YVL GWE S  +S +L D ++R  N L VP+++
Subjt:  IPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISR-LNGLKVPKDN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATATCAAAGTCGACATTCCAACAAGTGAGCAGGCTAAGTATAGAACACACAAGGGAGAGGTGGCCACAAATGTCCTTGGTGTGTGTGACATGAAAGGAGATTTCAT
TTATGTACTTGTCGGTTGGGAAAGATCAATTGCGAACTCATGCATCCTTCGAGATACCATTTCAAGGCTTAATGGCCTGAAAGTGCCCAAGGATAACTACCTATGGCACT
GTATGTAG
mRNA sequenceShow/hide mRNA sequence
TTCTTTTCCAACACGGTGTCAATCTATAATTTATAATGGATGAACATAAGTTTTGCATCTCTTATAATTGCGTTCATAACATCCCAACGTTAGTTGCTACTAATGTTGGA
GTTTTTAATTAATGACACGAAGAGGATACCGCATATCCTGCATGACACTAGCCATAGGATCAGACAGTTAGCCTATTTTCGCATGATTCATGCCTCAAACCTTGTGTGTC
AGCAAAGTACGAGAATGGATCGAAGATGTTTCGCCATTCTATGCCACCTATTGAGGACCATTACTGAACTAACGTAGACAGAAGTTGTCAATGTTGAAGAGATGGTCGCA
ATGTTCCTCCACATACTCGCGCACGATGTGAAAAACTGTGTCATTCACCAAGAGTTCATACGATCGGAATTTCCTTGGTGCATTAGATGGGATGTATATCAAAGTCGACA
TTCCAACAAGTGAGCAGGCTAAGTATAGAACACACAAGGGAGAGGTGGCCACAAATGTCCTTGGTGTGTGTGACATGAAAGGAGATTTCATTTATGTACTTGTCGGTTGG
GAAAGATCAATTGCGAACTCATGCATCCTTCGAGATACCATTTCAAGGCTTAATGGCCTGAAAGTGCCCAAGGATAACTACCTATGGCACTGTATGTAGAAATACAATTT
ATCAATTAACAGCTGCGACATTTTAATCGCTCAATGTGATCACAAGAGATGTCCACGGGGCGGCATAAGGCCGGGGATGCCACTCCCTGTCCCCGTCCCTACCTCCTATT
CCATTCCCCATCCCCATCAATTTCCACGTGGGGAACGGGGCGGGGATTCTCCATGGGGATTCCACGGGGATTGGGTTCCT
Protein sequenceShow/hide protein sequence
MYIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNYLWHCM