; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0063531 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0063531
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr03:4032870..4034741
RNA-Seq ExpressionCmc03g0063531
SyntenyCmc03g0063531
Gene Ontology termsNA
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051218.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-1446.85Show/hide
Query:  VLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHIN-NASILVL---SEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNE-EPKFCES
        +LLKGTL DG Y+LE V+ K      +S+ + +QF H N + S  VL   +  V  ++  SK V HRRL +P  KILNS+L+ CN +VNDN  + KFC+ 
Subjt:  VLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHIN-NASILVL---SEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNE-EPKFCES

Query:  YQLGKAHKLPF
         Q GK+H LPF
Subjt:  YQLGKAHKLPF

KAA0054901.1 T3P18.3 [Cucumis melo var. makuwa]9.6e-4287.38Show/hide
Query:  NQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKF
        N AKDTG VLLKGTL DGLY+LEGVAVKSVGELEHSD+SKKQF+HINNASILVLSEKVSSSIGASKTV  RRLGHPSMKILNSLL++CN +VNDNEEPK 
Subjt:  NQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKF

Query:  CES
        CES
Subjt:  CES

KAA0054968.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-4584.82Show/hide
Query:  QAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKFC
        +AKDTGRVLLKGTL DGLY+L+GVAVKS+GELEHSD+SKKQFQHINNA I +LSEKVSSSIGASKTV HR LGHPSMKILNSL++DCN  VNDNEEPKFC
Subjt:  QAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKFC

Query:  ESYQLGKAHKLP
        ES QLGKAH LP
Subjt:  ESYQLGKAHKLP

TYK18874.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.4e-1546.55Show/hide
Query:  KDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHIN-NASILVL---SEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNE-EP
        K T  +LLKGTL DG Y+LE V+ K      +S+ + +QF H N + S  VL   +  V  ++  SK V HRRL +P  KILNS+L+ CN +VNDN  + 
Subjt:  KDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHIN-NASILVL---SEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNE-EP

Query:  KFCESYQLGKAHKLPF
        KFC+  Q GK+H LPF
Subjt:  KFCESYQLGKAHKLPF

TYK22689.1 T3P18.3 [Cucumis melo var. makuwa]9.6e-4287.38Show/hide
Query:  NQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKF
        N AKDTG VLLKGTL DGLY+LEGVAVKSVGELEHSD+SKKQF+HINNASILVLSEKVSSSIGASKTV  RRLGHPSMKILNSLL++CN +VNDNEEPK 
Subjt:  NQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKF

Query:  CES
        CES
Subjt:  CES

TrEMBL top hitse value%identityAlignment
A0A5A7U7E9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1446.85Show/hide
Query:  VLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHIN-NASILVL---SEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNE-EPKFCES
        +LLKGTL DG Y+LE V+ K      +S+ + +QF H N + S  VL   +  V  ++  SK V HRRL +P  KILNS+L+ CN +VNDN  + KFC+ 
Subjt:  VLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHIN-NASILVL---SEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNE-EPKFCES

Query:  YQLGKAHKLPF
         Q GK+H LPF
Subjt:  YQLGKAHKLPF

A0A5A7UJ11 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-4684.82Show/hide
Query:  QAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKFC
        +AKDTGRVLLKGTL DGLY+L+GVAVKS+GELEHSD+SKKQFQHINNA I +LSEKVSSSIGASKTV HR LGHPSMKILNSL++DCN  VNDNEEPKFC
Subjt:  QAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKFC

Query:  ESYQLGKAHKLP
        ES QLGKAH LP
Subjt:  ESYQLGKAHKLP

A0A5A7UMW2 T3P18.34.7e-4287.38Show/hide
Query:  NQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKF
        N AKDTG VLLKGTL DGLY+LEGVAVKSVGELEHSD+SKKQF+HINNASILVLSEKVSSSIGASKTV  RRLGHPSMKILNSLL++CN +VNDNEEPK 
Subjt:  NQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKF

Query:  CES
        CES
Subjt:  CES

A0A5D3D5P2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-1546.55Show/hide
Query:  KDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHIN-NASILVL---SEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNE-EP
        K T  +LLKGTL DG Y+LE V+ K      +S+ + +QF H N + S  VL   +  V  ++  SK V HRRL +P  KILNS+L+ CN +VNDN  + 
Subjt:  KDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHIN-NASILVL---SEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNE-EP

Query:  KFCESYQLGKAHKLPF
        KFC+  Q GK+H LPF
Subjt:  KFCESYQLGKAHKLPF

A0A5D3DHC7 T3P18.34.7e-4287.38Show/hide
Query:  NQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKF
        N AKDTG VLLKGTL DGLY+LEGVAVKSVGELEHSD+SKKQF+HINNASILVLSEKVSSSIGASKTV  RRLGHPSMKILNSLL++CN +VNDNEEPK 
Subjt:  NQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDCNKLVNDNEEPKF

Query:  CES
        CES
Subjt:  CES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATAGTGGTGCTACAAATCATGTTACATCTGATCATTCAAATCTGTGGAATATTACCAATTAATCAGGCCAAGGATACGGGTCGAGTACTGCTGAAAGGAACACT
TTGTGATGGCTTATATTACCTTGAAGGTGTGGCTGTGAAGTCGGTTGGTGAGTTGGAGCATAGTGATAATAGTAAGAAACAGTTTCAGCACATAAATAATGCATCAATAT
TAGTGTTGTCTGAAAAAGTCAGTAGTAGTATTGGTGCTTCCAAAACTGTTAGGCATAGACGTCTTGGTCACCCATCTATGAAGATTTTAAATTCCTTACTTCAAGATTGT
AATAAGCTTGTTAATGATAATGAAGAGCCAAAATTTTGTGAATCTTATCAACTTGGTAAGGCACATAAGCTTCCATTTAATCTTTCTCAAAATAAGCAGCTGATATTTTT
GATCTAA
mRNA sequenceShow/hide mRNA sequence
AAAAGGAGGAAATATTGTCTCTTAAGAAAAATCCTTCTTCAGACCTTTTTCTATCCTGGTATCAGAGCTGCTATGGCCAACGCCTCTCTTAATGTCTCACCGCCAATCAC
CGCTGTTTTCACCACTCCTCCATTAAATCAACTATTAAACCAACTTCCCTCCATCAAACTTGATCAGACGAATTACCTTCTATGGAAGACAATGGCACTCCCAATTTTGA
AAAGTTATAAGTTAGAGGGACATCTAAAGGGTGAAACACCCTGCCCCCGAAATTTCTCTCTTCAGCCACTGGTGAGTCTACAGAAACAGTCAGGTAATCAGTGAAGATAC
GACAGCTTATTCATCCACCTTAATGGATTCAAAAATCGTGAACCCAAAGTATGAACAATGGGTCACCTCCGATCTACTTTTACTTGGATGGATTTATAATTCCATGGTAC
CGGATGTAGCACTTCAACTCATTGGATTTAATACAGCAAAGGATCTTTGGGAGGCCATTCAAATTTTGTTTGGAATTCAATCAAGGGCAAAAGAAGATTTTCTTCGTCAA
ACCTTCCAAACTACTCAGAAAGGTAATTATAAAATGAAAGATTACTTGAGAATTATGAAAACTAACGCAGATAATCTCGGCCAGGCCGAGAGCCCTATTCCTCTTCGCTG
TTTAATTACACAGGTGTTATTAGGGCTTGATGAAGTTTACAACCCTGTTACTGCGGTTATTCAAGATTGGTGGAAACCATTCTAATCAAAATGGACAGTGAAACAATTCT
AATGGCCGCGGACGTGGTCGAGGAAGAGGTAACAAACCTACATGTCAGGGATGTGGAAAATATGGCCACTTAGCTTTGATTTGTTGTGATAGATACAATAAAGAAGTCGT
TGGAAATGTAAATCAGAATAAAGGATTTAATCCAAATCAGAATGGAAAACAAATTCCTGCTGCTGCCTTTATTACCACCCAGAAATCATCTTCATTAGCCACACCTGAAA
CTGTAGTTGATACAAATTGGTATGTCGATAGTGGTGCTACAAATCATGTTACATCTGATCATTCAAATCTGTGGAATATTACCAATTAATCAGGCCAAGGATACGGGTCG
AGTACTGCTGAAAGGAACACTTTGTGATGGCTTATATTACCTTGAAGGTGTGGCTGTGAAGTCGGTTGGTGAGTTGGAGCATAGTGATAATAGTAAGAAACAGTTTCAGC
ACATAAATAATGCATCAATATTAGTGTTGTCTGAAAAAGTCAGTAGTAGTATTGGTGCTTCCAAAACTGTTAGGCATAGACGTCTTGGTCACCCATCTATGAAGATTTTA
AATTCCTTACTTCAAGATTGTAATAAGCTTGTTAATGATAATGAAGAGCCAAAATTTTGTGAATCTTATCAACTTGGTAAGGCACATAAGCTTCCATTTAATCTTTCTCA
AAATAAGCAGCTGATATTTTTGATCTAATTCATTGTGATTTATGGGGACCTGCTCCAATTACCTCCACTGATGGATACAGATATTACATACTTTTTGTTGATGATTTTA
Protein sequenceShow/hide protein sequence
MSIVVLQIMLHLIIQICGILPINQAKDTGRVLLKGTLCDGLYYLEGVAVKSVGELEHSDNSKKQFQHINNASILVLSEKVSSSIGASKTVRHRRLGHPSMKILNSLLQDC
NKLVNDNEEPKFCESYQLGKAHKLPFNLSQNKQLIFLI