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Cmc03g0063711 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0063711
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr03:4251139..4254366
RNA-Seq ExpressionCmc03g0063711
SyntenyCmc03g0063711
Gene Ontology termsNA
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051295.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.5e-3068.37Show/hide
Query:  IDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFF----LVVKATTI
        +DWSLT+P R+K AL TP WKQA DEEY+AL+K QTWHLVPPSS   V+G KWVFR+KRN+ G+I+ YK RLVA GFHQ+LGVDFF     VVKA+TI
Subjt:  IDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFF----LVVKATTI

KAA0054967.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.2e-2994.29Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIG
        MT QAKAGIFKP TLL TSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPS DLNVIG
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIG

TYJ96957.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.2e-2967.35Show/hide
Query:  IDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFF----LVVKATTI
        +DWSLT+P R+K AL TP WKQA DEEY+AL+K QTWHLVPPS    V G KWVFR+KRN+ G+I+ YK RLVA GFHQ+LGVDFF     VVKA+TI
Subjt:  IDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFF----LVVKATTI

XP_016899477.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]6.1e-3666.1Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN
        M  QAK+ IFKPKTL+ T+ +DWSLT+P R+K AL TP WKQA DEEY+AL+K QTWHLVPPS    V G KWVFR+KRN+ G+I+ YK RLVA GFHQ+
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN

Query:  LGVDFF----LVVKATTI
        LGVDFF     VVKA+TI
Subjt:  LGVDFF----LVVKATTI

XP_038885859.1 uncharacterized mitochondrial protein AtMg00820-like [Benincasa hispida]4.7e-2853.39Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN
        M  +AKAGIFKPK+ + +   +WS T+ TR+   L TP WK+A DE+Y+AL+KN+TW LVP S    ++G+KW+FR+KRN  G IQRYKARLV  GFHQ+
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN

Query:  LGVDFF----LVVKATTI
         GVD F     ++K++TI
Subjt:  LGVDFF----LVVKATTI

TrEMBL top hitse value%identityAlignment
A0A1S4DU00 uncharacterized mitochondrial protein AtMg00820-like2.9e-3666.1Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN
        M  QAK+ IFKPKTL+ T+ +DWSLT+P R+K AL TP WKQA DEEY+AL+K QTWHLVPPS    V G KWVFR+KRN+ G+I+ YK RLVA GFHQ+
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN

Query:  LGVDFF----LVVKATTI
        LGVDFF     VVKA+TI
Subjt:  LGVDFF----LVVKATTI

A0A5A7UCD7 Putative mitochondrial protein3.1e-3068.37Show/hide
Query:  IDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFF----LVVKATTI
        +DWSLT+P R+K AL TP WKQA DEEY+AL+K QTWHLVPPSS   V+G KWVFR+KRN+ G+I+ YK RLVA GFHQ+LGVDFF     VVKA+TI
Subjt:  IDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFF----LVVKATTI

A0A5D3BCV9 Putative mitochondrial protein3.5e-2967.35Show/hide
Query:  IDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFF----LVVKATTI
        +DWSLT+P R+K AL TP WKQA DEEY+AL+K QTWHLVPPS    V G KWVFR+KRN+ G+I+ YK RLVA GFHQ+LGVDFF     VVKA+TI
Subjt:  IDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFF----LVVKATTI

A0A5D3DGN1 Putative mitochondrial protein3.5e-2994.29Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIG
        MT QAKAGIFKP TLL TSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPS DLNVIG
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIG

A0A6J1DXJ5 uncharacterized protein LOC1110250201.5e-2756.78Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN
        M  +AK  IFKPK  +  ++ DW+ T+PTRVKDAL TP WK A + E+ AL+ N+ WH VP S  LNV+GSKW+F+IK NS   IQ YKARLVA  FHQN
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN

Query:  LGVDFF----LVVKATTI
        LG+DFF     V++A+TI
Subjt:  LGVDFF----LVVKATTI

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.9e-1043.28Show/hide
Query:  SWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDF
        SW++A + E NA   N TW +     + N++ S+WVF +K N  G   RYKARLVA GF Q   +D+
Subjt:  SWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-0838.95Show/hide
Query:  KPTRVKDALTTPSWKQ---ATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVD----FFLVVKATTI
        +P  +K+ L+ P   Q   A  EE  +L KN T+ LV        +  KWVF++K++    + RYKARLV  GF Q  G+D    F  VVK T+I
Subjt:  KPTRVKDALTTPSWKQ---ATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVD----FFLVVKATTI

P92520 Uncharacterized mitochondrial protein AtMg008204.5e-1845.71Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN
        M  ++KAGI K       ++      +P  V  AL  P W QA  EE +AL +N+TW LVPP  + N++G KWVF+ K +S GT+ R KARLVA GFHQ 
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN

Query:  LGVDF
         G+ F
Subjt:  LGVDF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-1640.34Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLV-PPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQ
        M  +AKAGI KP      ++   + ++P     AL    W+ A   E NA + N TW LV PP S + ++G +W+F  K NS G++ RYKARLVA G++Q
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLV-PPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQ

Query:  NLGVD----FFLVVKATTI
          G+D    F  V+K+T+I
Subjt:  NLGVD----FFLVVKATTI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.8e-1541.32Show/hide
Query:  MTNQAKAGIFKP--KTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLV-PPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGF
        M  +AK GI KP  K    TSL   + ++P     A+    W+QA   E NA + N TW LV PP   + ++G +W+F  K NS G++ RYKARLVA G+
Subjt:  MTNQAKAGIFKP--KTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLV-PPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGF

Query:  HQNLGVD----FFLVVKATTI
        +Q  G+D    F  V+K+T+I
Subjt:  HQNLGVD----FFLVVKATTI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.3e-1243.04Show/hide
Query:  KPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDF
        +P+   +A     W  A D+E  A+    TW +     +   IG KWV++IK NS GTI+RYKARLVA G+ Q  G+DF
Subjt:  KPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDF

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)3.2e-1945.71Show/hide
Query:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN
        M  ++KAGI K       ++      +P  V  AL  P W QA  EE +AL +N+TW LVPP  + N++G KWVF+ K +S GT+ R KARLVA GFHQ 
Subjt:  MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQN

Query:  LGVDF
         G+ F
Subjt:  LGVDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAATCAGGCTAAAGCAGGTATATTCAAACCAAAAACCCTTCTCTTCACGTCCTTGATTGACTGGTCATTAACAAAACCGACGAGGGTTAAGGATGCTTTGACTAC
TCCCTCTTGGAAACAAGCGACGGATGAGGAGTATAATGCTCTTGTCAAAAATCAAACATGGCACCTAGTTCCACCATCTTCAGATTTGAATGTGATTGGCAGTAAGTGGG
TATTTCGAATTAAGAGAAACTCATATGGGACAATCCAACGGTATAAGGCACGACTTGTTGCCAATGGATTTCATCAAAACCTGGGTGTTGATTTCTTTCTGGTCGTTAAA
GCTACAACCATTTGA
mRNA sequenceShow/hide mRNA sequence
TGAAGAAATATTATCTCTTCAGAAAAAGCTTTCTCCAAACCGATCTTTTCTTGGTATCAGAGCTAGTAATATGGCCAACGCCTCTCCCATTGTCTCACCGCCGGTCACCA
CTGTTTTTACCACTCCTCCATTGAATCAATTATTAAACCAACTTCCCTCCACCAAACTTGACTGGACGAATTATCTTCTATGGAAGACAATGACACTCCCAATTTTAAAA
AGTTATAAGTTAGAGAGACATCTAACGGGTGAAACACCCTGCCCCCGAAATTTCTCTCTTCAGCTGCTGGTGAGTATTCAGAAACCGTCGGCGTTAAAGCTCCATCTGCA
GTCAGTAAAGGAACGACAACTTCTTCATTCACCTCAACGGATTCAAAAATCGTGAACCCAAAGTATGAACAATGGGTCACCTCCGATCTACTTCTACTTGGATGGATTTA
TAACTCCATGGTGCCGAATATAACACTTCAACTAATGGGATTTAATCAACAAAGGATCTTTTAGAGGCCATTTAAAATTTGTTTGGAATTCAATCAAGGGCAGAAGAAGA
TTTTCTTCGTCACACCTTCCAAACTACTCGAAAAGGTAATTATAAAATGGAAGATTACTTGAGAATTATGAAAACTAACGTAGATAATCTCAGCCAATCCGGGAGCCCTG
TTCCTCTTGGCTAGATATGCAATCTGAGTTATTGATCTTTGAAAAGCGCCTTGAACATCAAAACTCTTAAAGAAATCCAGGAACTGTTATCTCAAATCCCTTTGTCAATA
TAGCGCAAAATAGACTGAATGATACTCGACAGAACTCTCATGTTTATCATTTTGGTGGAAACCAATCTAATCAAAATGGACAGTGAAACAACTTTAATGGCCGCGGACGT
GGTCGAGGAAGAGGTAACAAACCTACATGTTAGGTATGTGGAAAATATGGCCACTCAGCTTTGATTTTCTTTGATAGATACAATAAAATAGTTGCTGGAAATGTAAATCA
GAATAAAGGATTTAATCCAAATCAAAATGGAAAACAAATTTCTGCTGCTGCCTTTATTACCACTTAGAACTCATCTTCATTAGCCACACTTGAGACTGTGGTTGATACAA
ACTGGTATGTCGATAGTGGTGCCACAAATCATGTTACATCTGATCATACAAATCTGTAGAATATTGCTGATTATTCAGGTAATGAAAATGTAGTTGTTGAGAATGGAAAT
AAATTGCAAATATCATGTGTTGGTTATGCAAGTTTAACTGATGAGAAAAATTGTTTAAGACTTGACAATATTTTGTGTGTGCCTTAAATTAAGAAAAATCTAGTTAGTTT
GTTGAAACTATCTCAAGATAATAATGTACTCCTTGAATTTCATAATGCTTAGCTTGTTGTTTTGTTAAAGCCAAGGATACCGGTCGAGTACTGCTGAAAGGAACACTTAG
TGATGGCTTATATCATCTTGACGATGTGGCTGTGAAGTCGGTTGGTGAATAGGAGCATAGTGATAGTAGTAAGAAACAGTTTCAGCACATAAATAATGCATTAATATCAA
TGTTGTCTGAAAAAGTCAGTAGTAGTATTGGTGCTTCCAAAACTGTTTGGCATAGACATTTAGGTCACCCATCTATGAAGATTTTAAATTCCTTAGTTAAAGATTGTAAT
CTTCCTGTTAATGATAATGAAGAGCCTAAATTTTGTGAATCTTGTCAGCTTGGTAAGGCATATAAGCTTCCATAATCTTGTCACCCAATTACTTCTTCTCAGCTTGCCCA
CTCCAACCCAAGTCCATCGGCCCACTATCCTACATCCCAATTGGCCCAATCCCCTACTTCACCATCGACTCACTATTCTACATCCCAACTGGCCCAACCCCTACTTCACC
ATCGGCCCATCCTTCAACCTACACTACTTCTTCACTGATTGACCTTTCTCCCTAAACATGTCCAACCTAAATGCTGTCGAAAATTCTCCTCTTTCAACTTCTTCTTCCTC
GTAGACAAGTCCTTTGCCAATCTCCCATTTTGATAGCTTACCTGCAAATTCCTATCCAAATACCATACCTTTACCCTCTCATCCTATGACTAATCAGGCTAAAGCAGGTA
TATTCAAACCAAAAACCCTTCTCTTCACGTCCTTGATTGACTGGTCATTAACAAAACCGACGAGGGTTAAGGATGCTTTGACTACTCCCTCTTGGAAACAAGCGACGGAT
GAGGAGTATAATGCTCTTGTCAAAAATCAAACATGGCACCTAGTTCCACCATCTTCAGATTTGAATGTGATTGGCAGTAAGTGGGTATTTCGAATTAAGAGAAACTCATA
TGGGACAATCCAACGGTATAAGGCACGACTTGTTGCCAATGGATTTCATCAAAACCTGGGTGTTGATTTCTTTCTGGTCGTTAAAGCTACAACCATTTGAATAGTCCTCA
GCTTGGCAGTTTCGAAAGGTTGGTATTTAAGACAACTCGACTGTCATAATACTGTCCTTAATGGTAGCTTAACAGAGGCTGTCTACATGGTTCAACCTTCTAGGTTGTTA
AACGGATACTTCATTATATCAGTGGTACTAAGCATTATGGCATTTTATTTCAACCAAATACTGACTTGTCTATAACAGCTTTCTTTGATGTCGATTGGGCTTCAAATATT
GATGAT
Protein sequenceShow/hide protein sequence
MTNQAKAGIFKPKTLLFTSLIDWSLTKPTRVKDALTTPSWKQATDEEYNALVKNQTWHLVPPSSDLNVIGSKWVFRIKRNSYGTIQRYKARLVANGFHQNLGVDFFLVVK
ATTI