; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0063941 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0063941
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:4453026..4454213
RNA-Seq ExpressionCmc03g0063941
SyntenyCmc03g0063941
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025998.1 pol protein [Cucumis melo var. makuwa]7.9e-20086.58Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        +P++SAVKT LL+EAHSSPFTMHPGS KMYQDLR VYWWR MKR V DFVSRCLVCQQVKAPRQ P GLLQPLSVPG K ESVSM F+TGLP+TLKGYTV
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRLTKS HF+ GKSTYTASKWGQLYMTEIVRLHGVPVSI+SDRDARFTSKFWK LQ+ALGTRLD ST+FHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHL++F YNNSYQATIGMAPFEALYG+CCRSPVCWGE+GEQR+LG ELVQTTNAAIQKIRAR+LT QS+QKSY DVRRKD++F+VG+MVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRF KKGKLSP FVG FEILERI PVAYRLALPPSF+AVHD FHI MLRKYVADP H+VDFEPLQI ENLSYEEQPVE+LAREVK LR+
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

KAA0050760.1 pol protein [Cucumis melo var. makuwa]7.9e-20086.58Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        +P++SAVKT LL+EAHSSPFTMHPGS KMYQDLR VYWWR MKR V DFVSRCLVCQQVKAPRQ P GLLQPLSVPG K ESVSM F+TGLP+TLKGYTV
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRLTKS HF+ GKSTYTASKWGQLYMTEIVRLHGVPVSI+SDRDARFTSKFWK LQ+ALGTRLD ST+FHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHL++F YNNSYQATIGMAPFEALYG+CCRSPVCWGE+GEQR+LG ELVQTTNAAIQKIRAR+LT QS+QKSY DVRRKD++F+VG+MVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRF KKGKLSP FVG FEILERI PVAYRLALPPSF+AVHD FHI MLRKYVADP H+VDFEPLQI ENLSYEEQPVE+LAREVK LR+
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

KAA0054946.1 pol protein [Cucumis melo var. makuwa]2.7e-21695.19Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        MP+NSAVKT LLSEAHSSPFTMHPGSMKMYQDLRRV+WWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGF+T LPRTLKGY V
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRL KS HFI GKSTYTASKWG+LYMTEIVRLHGVPVSIISDRDARFTSKFWKR QLALGTRLDL+TSFHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQS+QKSYVDVRRKDIKFDVGEMVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRFE+KGKLSPHFV SFEILERIDPVAYRLALPPSFS VHD FHIFMLRKYVADP HIVDFEPLQIDENLSYEEQPVEILAREV MLRN
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

TYK01576.1 pol protein [Cucumis melo var. makuwa]7.9e-20086.58Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        +P++SAVKT LL+EAHSSPFTMHPGS KMYQDLR VYWWR MKR V DFVSRCLVCQQVKAPRQ P GLLQPLSVPG K ESVSM F+TGLP+TLKGYTV
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRLTKS HF+ GKSTYTASKWGQLYMTEIVRLHGVPVSI+SDRDARFTSKFWK LQ+ALGTRLD ST+FHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHL++F YNNSYQATIGMAPFEALYG+CCRSPVCWGE+GEQR+LG ELVQTTNAAIQKIRAR+LT QS+QKSY DVRRKD++F+VG+MVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRF KKGKLSP FVG FEILERI PVAYRLALPPSF+AVHD FHI MLRKYVADP H+VDFEPLQI ENLSYEEQPVE+LAREVK LR+
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

TYK20443.1 pol protein [Cucumis melo var. makuwa]7.9e-20086.58Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        +P++SAVKT LL+EAHSSPFTMHPGS KMYQDLR VYWWR MKR V DFVSRCLVCQQVKAPRQ P GLLQPLSVPG K ESVSM F+TGLP+TLKGYTV
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRLTKS HF+ GKSTYTASKWGQLYMTEIVRLHGVPVSI+SDRDARFTSKFWK LQ+ALGTRLD ST+FHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHL++F YNNSYQATIGMAPFEALYG+CCRSPVCWGE+GEQR+LG ELVQTTNAAIQKIRAR+LT QS+QKSY DVRRKD++F+VG+MVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRF KKGKLSP FVG FEILERI PVAYRLALPPSF+AVHD FHI MLRKYVADP H+VDFEPLQI ENLSYEEQPVE+LAREVK LR+
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

TrEMBL top hitse value%identityAlignment
A0A5A7SIJ5 Reverse transcriptase3.8e-20086.58Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        +P++SAVKT LL+EAHSSPFTMHPGS KMYQDLR VYWWR MKR V DFVSRCLVCQQVKAPRQ P GLLQPLSVPG K ESVSM F+TGLP+TLKGYTV
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRLTKS HF+ GKSTYTASKWGQLYMTEIVRLHGVPVSI+SDRDARFTSKFWK LQ+ALGTRLD ST+FHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHL++F YNNSYQATIGMAPFEALYG+CCRSPVCWGE+GEQR+LG ELVQTTNAAIQKIRAR+LT QS+QKSY DVRRKD++F+VG+MVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRF KKGKLSP FVG FEILERI PVAYRLALPPSF+AVHD FHI MLRKYVADP H+VDFEPLQI ENLSYEEQPVE+LAREVK LR+
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

A0A5A7U6G5 Reverse transcriptase3.8e-20086.58Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        +P++SAVKT LL+EAHSSPFTMHPGS KMYQDLR VYWWR MKR V DFVSRCLVCQQVKAPRQ P GLLQPLSVPG K ESVSM F+TGLP+TLKGYTV
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRLTKS HF+ GKSTYTASKWGQLYMTEIVRLHGVPVSI+SDRDARFTSKFWK LQ+ALGTRLD ST+FHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHL++F YNNSYQATIGMAPFEALYG+CCRSPVCWGE+GEQR+LG ELVQTTNAAIQKIRAR+LT QS+QKSY DVRRKD++F+VG+MVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRF KKGKLSP FVG FEILERI PVAYRLALPPSF+AVHD FHI MLRKYVADP H+VDFEPLQI ENLSYEEQPVE+LAREVK LR+
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

A0A5D3BTN0 Reverse transcriptase3.8e-20086.58Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        +P++SAVKT LL+EAHSSPFTMHPGS KMYQDLR VYWWR MKR V DFVSRCLVCQQVKAPRQ P GLLQPLSVPG K ESVSM F+TGLP+TLKGYTV
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRLTKS HF+ GKSTYTASKWGQLYMTEIVRLHGVPVSI+SDRDARFTSKFWK LQ+ALGTRLD ST+FHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHL++F YNNSYQATIGMAPFEALYG+CCRSPVCWGE+GEQR+LG ELVQTTNAAIQKIRAR+LT QS+QKSY DVRRKD++F+VG+MVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRF KKGKLSP FVG FEILERI PVAYRLALPPSF+AVHD FHI MLRKYVADP H+VDFEPLQI ENLSYEEQPVE+LAREVK LR+
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

A0A5D3C6W3 Reverse transcriptase3.8e-20086.58Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        +P++SAVKT LL+EAHSSPFTMHPGS KMYQDLR VYWWR MKR V DFVSRCLVCQQVKAPRQ P GLLQPLSVPG K ESVSM F+TGLP+TLKGYTV
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRLTKS HF+ GKSTYTASKWGQLYMTEIVRLHGVPVSI+SDRDARFTSKFWK LQ+ALGTRLD ST+FHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHL++F YNNSYQATIGMAPFEALYG+CCRSPVCWGE+GEQR+LG ELVQTTNAAIQKIRAR+LT QS+QKSY DVRRKD++F+VG+MVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRF KKGKLSP FVG FEILERI PVAYRLALPPSF+AVHD FHI MLRKYVADP H+VDFEPLQI ENLSYEEQPVE+LAREVK LR+
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

A0A5D3DGK2 Pol protein1.3e-21695.19Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV
        MP+NSAVKT LLSEAHSSPFTMHPGSMKMYQDLRRV+WWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGF+T LPRTLKGY V
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTV

Query:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF
        IWVVVDRL KS HFI GKSTYTASKWG+LYMTEIVRLHGVPVSIISDRDARFTSKFWKR QLALGTRLDL+TSFHPQTDGQTERLNQILEDMLRACVLEF
Subjt:  IWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEF

Query:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV
        SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQS+QKSYVDVRRKDIKFDVGEMVFLKV
Subjt:  SGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKV

Query:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN
        APMKGVLRFE+KGKLSPHFV SFEILERIDPVAYRLALPPSFS VHD FHIFMLRKYVADP HIVDFEPLQIDENLSYEEQPVEILAREV MLRN
Subjt:  APMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein9.8e-4430.94Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY
        +P ++ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP  +P S+R  ES+SM F+T LP +  GY
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY

Query:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL
          ++VVVDR +K    +    + TA +  +++   ++   G P  II+D D  FTS+ WK         +  S  + PQTDGQTER NQ +E +LR    
Subjt:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL

Query:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV
            +W  H+ L++  YNN+  +   M PFE ++      SP+      ++     E  Q T    Q ++  + T   K K Y D++ ++I +F  G++V
Subjt:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV

Query:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY
         +K     G L   K  KL+P F G F +L++  P  Y L LP S   +  + FH+  L KY
Subjt:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY

P0CT35 Transposon Tf2-2 polyprotein9.8e-4430.94Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY
        +P ++ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP  +P S+R  ES+SM F+T LP +  GY
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY

Query:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL
          ++VVVDR +K    +    + TA +  +++   ++   G P  II+D D  FTS+ WK         +  S  + PQTDGQTER NQ +E +LR    
Subjt:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL

Query:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV
            +W  H+ L++  YNN+  +   M PFE ++      SP+      ++     E  Q T    Q ++  + T   K K Y D++ ++I +F  G++V
Subjt:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV

Query:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY
         +K     G L   K  KL+P F G F +L++  P  Y L LP S   +  + FH+  L KY
Subjt:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY

P0CT36 Transposon Tf2-3 polyprotein9.8e-4430.94Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY
        +P ++ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP  +P S+R  ES+SM F+T LP +  GY
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY

Query:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL
          ++VVVDR +K    +    + TA +  +++   ++   G P  II+D D  FTS+ WK         +  S  + PQTDGQTER NQ +E +LR    
Subjt:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL

Query:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV
            +W  H+ L++  YNN+  +   M PFE ++      SP+      ++     E  Q T    Q ++  + T   K K Y D++ ++I +F  G++V
Subjt:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV

Query:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY
         +K     G L   K  KL+P F G F +L++  P  Y L LP S   +  + FH+  L KY
Subjt:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY

P0CT41 Transposon Tf2-12 polyprotein9.8e-4430.94Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY
        +P ++ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP  +P S+R  ES+SM F+T LP +  GY
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY

Query:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL
          ++VVVDR +K    +    + TA +  +++   ++   G P  II+D D  FTS+ WK         +  S  + PQTDGQTER NQ +E +LR    
Subjt:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL

Query:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV
            +W  H+ L++  YNN+  +   M PFE ++      SP+      ++     E  Q T    Q ++  + T   K K Y D++ ++I +F  G++V
Subjt:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV

Query:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY
         +K     G L   K  KL+P F G F +L++  P  Y L LP S   +  + FH+  L KY
Subjt:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY

Q9UR07 Transposon Tf2-11 polyprotein9.8e-4430.94Show/hide
Query:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY
        +P ++ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP  +P S+R  ES+SM F+T LP +  GY
Subjt:  MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKR--ESVSMGFMTGLPRTLKGY

Query:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL
          ++VVVDR +K    +    + TA +  +++   ++   G P  II+D D  FTS+ WK         +  S  + PQTDGQTER NQ +E +LR    
Subjt:  TVIWVVVDRLTKSTHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVL

Query:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV
            +W  H+ L++  YNN+  +   M PFE ++      SP+      ++     E  Q T    Q ++  + T   K K Y D++ ++I +F  G++V
Subjt:  EFSGSWDSHLHLIKFIYNNSYQATIGMAPFEALYGRC-CRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDI-KFDVGEMV

Query:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY
         +K     G L   K  KL+P F G F +L++  P  Y L LP S   +  + FH+  L KY
Subjt:  FLKVAPMKGVLRFEKKGKLSPHFVGSFEILERIDPVAYRLALPPSFSAVHDA-FHIFMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAAAACAGTGCAGTCAAGACAGTGCTTTTGTCTGAGGCTCATAGTTCTCCATTTACCATGCACCCTGGAAGTATGAAGATGTACCAAGACTTGAGGCGTGTTTA
TTGGTGGAGAAACATGAAAAGAAAAGTGGTAGACTTCGTCAGTAGATGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAGAAGCCAGTAGGGTTGTTGCAACCCTTGA
GTGTGCCAGGATCAAAACGGGAGAGCGTGTCGATGGGCTTTATGACAGGACTACCAAGAACTTTAAAGGGTTATACAGTGATCTGGGTTGTTGTCGATAGGCTCACAAAG
TCAACCCATTTCATTCTAGGGAAGTCCACTTACACTGCTAGTAAGTGGGGACAGTTATATATGACCGAGATAGTGAGACTGCATGGAGTGCCTGTGTCTATCATTTCTGA
CAGAGATGCTCGTTTCACATCGAAGTTCTGGAAAAGACTTCAACTTGCATTGGGCACAAGGTTAGATTTAAGTACATCCTTTCATCCTCAAACTGATGGTCAAACAGAGA
GGTTGAACCAGATTTTGGAAGACATGTTGCGAGCTTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCATTTACATTTGATAAAGTTCATCTATAATAACAGCTATCAG
GCCACCATTGGTATGGCACCGTTTGAAGCTTTGTATGGTAGGTGTTGTAGATCTCCTGTTTGTTGGGGAGAGATCGGTGAGCAGAGGCTGTTAGGCCTTGAGCTAGTGCA
GACCACCAATGCAGCCATACAGAAGATTAGAGCACGCATACTGACAACACAGAGCAAACAGAAGAGTTATGTCGATGTACGACGTAAGGATATCAAGTTTGATGTGGGAG
AGATGGTATTTTTGAAGGTAGCACCTATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCACATTTTGTAGGGTCGTTTGAGATACTTGAGAGGATTGAC
CCTGTAGCTTATCGTTTGGCGTTGCCCCCATCGTTTTCTGCAGTTCATGACGCGTTTCATATCTTTATGCTGAGGAAGTATGTAGCAGATCCGGCGCATATAGTTGACTT
CGAACCATTGCAAATTGATGAGAACTTGAGTTACGAGGAGCAGCCTGTTGAGATTTTGGCAAGGGAGGTCAAGATGCTCCGTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAAAACAGTGCAGTCAAGACAGTGCTTTTGTCTGAGGCTCATAGTTCTCCATTTACCATGCACCCTGGAAGTATGAAGATGTACCAAGACTTGAGGCGTGTTTA
TTGGTGGAGAAACATGAAAAGAAAAGTGGTAGACTTCGTCAGTAGATGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAGAAGCCAGTAGGGTTGTTGCAACCCTTGA
GTGTGCCAGGATCAAAACGGGAGAGCGTGTCGATGGGCTTTATGACAGGACTACCAAGAACTTTAAAGGGTTATACAGTGATCTGGGTTGTTGTCGATAGGCTCACAAAG
TCAACCCATTTCATTCTAGGGAAGTCCACTTACACTGCTAGTAAGTGGGGACAGTTATATATGACCGAGATAGTGAGACTGCATGGAGTGCCTGTGTCTATCATTTCTGA
CAGAGATGCTCGTTTCACATCGAAGTTCTGGAAAAGACTTCAACTTGCATTGGGCACAAGGTTAGATTTAAGTACATCCTTTCATCCTCAAACTGATGGTCAAACAGAGA
GGTTGAACCAGATTTTGGAAGACATGTTGCGAGCTTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCATTTACATTTGATAAAGTTCATCTATAATAACAGCTATCAG
GCCACCATTGGTATGGCACCGTTTGAAGCTTTGTATGGTAGGTGTTGTAGATCTCCTGTTTGTTGGGGAGAGATCGGTGAGCAGAGGCTGTTAGGCCTTGAGCTAGTGCA
GACCACCAATGCAGCCATACAGAAGATTAGAGCACGCATACTGACAACACAGAGCAAACAGAAGAGTTATGTCGATGTACGACGTAAGGATATCAAGTTTGATGTGGGAG
AGATGGTATTTTTGAAGGTAGCACCTATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCACATTTTGTAGGGTCGTTTGAGATACTTGAGAGGATTGAC
CCTGTAGCTTATCGTTTGGCGTTGCCCCCATCGTTTTCTGCAGTTCATGACGCGTTTCATATCTTTATGCTGAGGAAGTATGTAGCAGATCCGGCGCATATAGTTGACTT
CGAACCATTGCAAATTGATGAGAACTTGAGTTACGAGGAGCAGCCTGTTGAGATTTTGGCAAGGGAGGTCAAGATGCTCCGTAATTGA
Protein sequenceShow/hide protein sequence
MPKNSAVKTVLLSEAHSSPFTMHPGSMKMYQDLRRVYWWRNMKRKVVDFVSRCLVCQQVKAPRQKPVGLLQPLSVPGSKRESVSMGFMTGLPRTLKGYTVIWVVVDRLTK
STHFILGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKRLQLALGTRLDLSTSFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLIKFIYNNSYQ
ATIGMAPFEALYGRCCRSPVCWGEIGEQRLLGLELVQTTNAAIQKIRARILTTQSKQKSYVDVRRKDIKFDVGEMVFLKVAPMKGVLRFEKKGKLSPHFVGSFEILERID
PVAYRLALPPSFSAVHDAFHIFMLRKYVADPAHIVDFEPLQIDENLSYEEQPVEILAREVKMLRN