; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0063981 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0063981
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
Genome locationCMiso1.1chr03:4512146..4513159
RNA-Seq ExpressionCmc03g0063981
SyntenyCmc03g0063981
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034029.1 Beta-galactosidase [Cucumis melo var. makuwa]6.3e-16686.35Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATNHLTG SEHF++Y PC  NEKI IA+GSLAPIA KGQIV F+ F+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        KSV FQD++SGRTIGTAR+SR LYIL+DDT  SS+S  SLLSSYFSTSE D MLWHFRLGHPNFTYM+YLFPHLF K+DVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPF LIHSD+WGPSKVTTSS K WFVTFIDDHTRLTWVYLITDKSEV +IFQNFYHTI+TQFH KIAILRS+NGREFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
         SC YTPQQNGVAE+KNRHL+EVARSLMLSTSLPSYL
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]5.4e-16585.76Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGAT+HLTG SEHF++Y PC  NEKI IA+GSLAPIA KGQIV F+ F+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        +SV FQD++SGRTIGTAR+SRGLYIL+DDT  SS+S  SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPF LIHSDVWGPSKVTTSS K WFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIAILRS+NGREFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
         SC YTPQQNGVAE+KNRHL+EVARSLMLSTSLPSYL
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

KAA0066242.1 Beta-galactosidase [Cucumis melo var. makuwa]9.5e-17089.29Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M Q   LISVDG N WILDS AT+HLTGFSEHFVTYTPC  NEKI I +GSLAPIA KGQI+L++ FSLQNVLHVPKLSYNLLSISKITRELH KATFLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        +SV FQ+LNSGRTIGTAR+SRGLYILNDDT GSSISTTSLLSSY STSEHD+MLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPFTLIHSDVWGPSKVTT S K WFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRS+N REFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSY
        +SC YTPQQNGV E+KNRHLLEVARSLMLST LPSY
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSY

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]5.4e-16585.76Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGAT+HLTG SEHF++Y PC  NEKI IA+GSLAPIA KGQIV F+ F+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        +SV FQD++SGRTIGTAR+SRGLYIL+DDT  SS+S  SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPF LIHSDVWGPSKVTTSS K WFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIAILRS+NGREFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
         SC YTPQQNGVAE+KNRHL+EVARSLMLSTSLPSYL
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]5.4e-16585.76Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGAT+HLTG SEHF++Y PC  NEKI IA+GSLAPIA KGQIV F+ F+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        +SV FQD++SGRTIGTAR+SRGLYIL+DDT  SS+S  SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPF LIHSDVWGPSKVTTSS K WFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIAILRS+NGREFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
         SC YTPQQNGVAE+KNRHL+EVARSLMLSTSLPSYL
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

TrEMBL top hitse value%identityAlignment
A0A5A7SXY5 Beta-galactosidase3.1e-16686.35Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATNHLTG SEHF++Y PC  NEKI IA+GSLAPIA KGQIV F+ F+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        KSV FQD++SGRTIGTAR+SR LYIL+DDT  SS+S  SLLSSYFSTSE D MLWHFRLGHPNFTYM+YLFPHLF K+DVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPF LIHSD+WGPSKVTTSS K WFVTFIDDHTRLTWVYLITDKSEV +IFQNFYHTI+TQFH KIAILRS+NGREFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
         SC YTPQQNGVAE+KNRHL+EVARSLMLSTSLPSYL
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

A0A5A7VD20 Beta-galactosidase4.6e-17089.29Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M Q   LISVDG N WILDS AT+HLTGFSEHFVTYTPC  NEKI I +GSLAPIA KGQI+L++ FSLQNVLHVPKLSYNLLSISKITRELH KATFLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        +SV FQ+LNSGRTIGTAR+SRGLYILNDDT GSSISTTSLLSSY STSEHD+MLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPFTLIHSDVWGPSKVTT S K WFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRS+N REFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSY
        +SC YTPQQNGV E+KNRHLLEVARSLMLST LPSY
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSY

A0A5A7VLQ7 Beta-galactosidase2.6e-16585.76Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGAT+HLTG SEHF++Y PC  NEKI IA+GSLAPIA KGQIV F+ F+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        +SV FQD++SGRTIGTAR+SRGLYIL+DDT  SS+S  SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPF LIHSDVWGPSKVTTSS K WFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIAILRS+NGREFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
         SC YTPQQNGVAE+KNRHL+EVARSLMLSTSLPSYL
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

A0A5D3BJK7 Beta-galactosidase2.6e-16585.76Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGAT+HLTG SEHF++Y PC  NEKI IA+GSLAPIA KGQIV F+ F+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        +SV FQD++SGRTIGTAR+SRGLYIL+DDT  SS+S  SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPF LIHSDVWGPSKVTTSS K WFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIAILRS+NGREFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
         SC YTPQQNGVAE+KNRHL+EVARSLMLSTSLPSYL
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

A0A5D3C4T4 Beta-galactosidase2.6e-16585.76Show/hide
Query:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGAT+HLTG SEHF++Y PC  NEKI IA+GSLAPIA KGQIV F+ F+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS
        +SV FQD++SGRTIGTAR+SRGLYIL+DDT  SS+S  SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS
Subjt:  KSVCFQDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPS

Query:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ
        QPYKPTQPF LIHSDVWGPSKVTTSS K WFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIAILRS+NGREFQNHNLSEFLASKGIVHQ
Subjt:  QPYKPTQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQ

Query:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
         SC YTPQQNGVAE+KNRHL+EVARSLMLSTSLPSYL
Subjt:  NSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.3e-2728.61Show/hide
Query:  WILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLF---NSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLNSGR
        ++LDSGA++HL      +      V   KI +A       ATK  IV     +  +L++VL   + + NL+S+ ++              +  +   SG 
Subjt:  WILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLF---NSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLNSGR

Query:  TIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEH--DFMLWHFRLGHPNFTYM-----KYLF--PHLFLKIDVSSLSCDVCIRAKQHRVSFPSQPY
        TI       GL ++ +    +++   +   +Y   ++H  +F LWH R GH +   +     K +F    L   +++S   C+ C+  KQ R+ F     
Subjt:  TIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEH--DFMLWHFRLGHPNFTYM-----KYLF--PHLFLKIDVSSLSCDVCIRAKQHRVSFPSQPY

Query:  KP--TQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQN
        K    +P  ++HSDV GP    T   K +FV F+D  T     YLI  KS+V ++FQ+F    E  F+ K+  L  +NGRE+ ++ + +F   KGI +  
Subjt:  KP--TQPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQN

Query:  SCTYTPQQNGVAEQKNRHLLEVARSLMLSTSL
        +  +TPQ NGV+E+  R + E AR+++    L
Subjt:  SCTYTPQQNGVAEQKNRHLLEVARSLMLSTSL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-3530.67Show/hide
Query:  WILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFS----LQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLNSG
        W++D+ A++H T   + F  Y    D   + + N S + IA  G I +  +      L++V HVP L  NL+S   + R+ + ++ F  +      L  G
Subjt:  WILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFS----LQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLNSG

Query:  RTIGTARYSRG-LYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKI--DVSSLSCDVCIRAKQHRVSFPSQPYKPTQP
          +     +RG LY  N +     ++         +  E    LWH R+GH +   ++ L     +      +   CD C+  KQHRVSF +   +    
Subjt:  RTIGTARYSRG-LYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKI--DVSSLSCDVCIRAKQHRVSFPSQPYKPTQP

Query:  FTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQNSCTYTPQ
          L++SDV GP ++ +     +FVTFIDD +R  WVY++  K +V  +FQ F+  +E +  +K+  LRS+NG E+ +    E+ +S GI H+ +   TPQ
Subjt:  FTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQNSCTYTPQ

Query:  QNGVAEQKNRHLLEVARSLMLSTSLP
         NGVAE+ NR ++E  RS++    LP
Subjt:  QNGVAEQKNRHLLEVARSLMLSTSLP

Q12501 Transposon Ty2-OR2 Gag-Pol polyprotein1.8e-2226.57Show/hide
Query:  ILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQN-------VLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLN
        ++DSGA+  L   S H++ +        I  A     PI   G +     F+ QN        LH P ++Y+LLS+S++T +          + CF    
Subjt:  ILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQN-------VLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLN

Query:  SGRTIGT-----ARYSRGLYILNDDTFGSSIS--TTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RA
          R+ GT      ++    ++       S IS  T + ++   S +++ + L H  LGH NF  ++         YL        + S+  C  C+  ++
Subjt:  SGRTIGT-----ARYSRGLYILNDDTFGSSIS--TTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RA

Query:  KQHR-VSFPSQPYKPT-QPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSA--IFQNFYHTIETQFHKKIAILRSENGREFQNHN
         +HR V      Y+ + +PF  +H+D++GP      S   +F++F D+ TR  WVY + D+ E S   +F +    I+ QF+ ++ +++ + G E+ N  
Subjt:  KQHR-VSFPSQPYKPT-QPFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSA--IFQNFYHTIETQFHKKIAILRSENGREFQNHN

Query:  LSEFLASKGIVHQNSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL
        L +F  ++GI    + T   + +GVAE+ NR LL   R+L+  + LP++L
Subjt:  LSEFLASKGIVHQNSCTYTPQQNGVAEQKNRHLLEVARSLMLSTSLPSYL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.6e-4131.8Show/hide
Query:  NPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNS---FSLQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLNS
        N W+LDSGAT+H+T    +   + P    + + +A+GS  PI+  G   L       +L N+L+VP +  NL+S+ ++         F P S   +DLN+
Subjt:  NPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNS---FSLQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLNS

Query:  GRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSQPYKPTQ
        G  +   +    LY    +   +S    SL +S  S + H    WH RLGHP  + +  +  +  L +   S   LSC  C+  K ++V F       T+
Subjt:  GRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSQPYKPTQ

Query:  PFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQNSCTYTP
        P   I+SDVW  S + +     ++V F+D  TR TW+Y +  KS+V   F  F + +E +F  +I    S+NG EF    L E+ +  GI H  S  +TP
Subjt:  PFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQNSCTYTP

Query:  QQNGVAEQKNRHLLEVARSLMLSTSLP
        + NG++E+K+RH++E   +L+   S+P
Subjt:  QQNGVAEQKNRHLLEVARSLMLSTSLP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.6e-4132.42Show/hide
Query:  NPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVL---FNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLNS
        N W+LDSGAT+H+T    +   + P    + + IA+GS  PI   G   L     S  L  VL+VP +  NL+S+ ++         F P S   +DLN+
Subjt:  NPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVL---FNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCFQDLNS

Query:  GRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSQPYKPTQ
        G  +   +    LY    +   +S    S+ +S  S + H    WH RLGHP+   +  +  +  L +   S   LSC  C   K H+V F +     ++
Subjt:  GRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSQPYKPTQ

Query:  PFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQNSCTYTP
        P   I+SDVW  S + +     ++V F+D  TR TW+Y +  KS+V   F  F   +E +F  +I  L S+NG EF    L ++L+  GI H  S  +TP
Subjt:  PFTLIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQNSCTYTP

Query:  QQNGVAEQKNRHLLEVARSLMLSTSLP
        + NG++E+K+RH++E+  +L+   S+P
Subjt:  QQNGVAEQKNRHLLEVARSLMLSTSLP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGATGAATCCCTGGATTTTGGACTCGGGGGCCACAAATCACTTGACAGGTTTCTCGGAACATTTTGTCACT
TATACCCCCTGTGTCGATAATGAGAAAATCTGGATAGCCAATGGCTCTTTAGCTCCGATTGCTACAAAAGGACAAATAGTCCTCTTTAACAGTTTCTCCCTCCAG
AATGTTTTGCATGTGCCTAAGCTTTCTTACAATTTGTTATCTATCAGTAAGATCACCCGTGAGCTGCACTGTAAAGCTACTTTCTTACCTAAGTCTGTTTGCTTT
CAGGACTTGAATTCAGGGAGGACGATTGGCACTGCCCGGTATAGCAGGGGACTTTACATCCTTAATGATGATACCTTCGGTAGTAGTATCTCTACGACTAGTTTA
CTGTCTTCCTATTTTAGTACCTCTGAACATGACTTTATGTTGTGGCATTTTCGATTAGGTCACCCGAACTTTACGTATATGAAATATTTGTTTCCCCATCTCTTT
CTTAAAATAGATGTCTCCTCATTATCTTGTGATGTGTGCATTCGAGCAAAACAACATCGTGTTTCTTTTCCCTCACAACCATATAAACCCACACAACCGTTTACC
CTTATCCATAGTGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTAGGAAAATGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTAC
CTTATCACCGATAAATCTGAGGTTTCTGCTATTTTCCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAATTGCTATTCTTCGGAGTGAAAATGGT
CGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAGCCTCTAAGGGGATTGTTCACCAAAACTCGTGCACCTACACTCCTCAACAAAATGGAGTGGCAGAGCAA
AAAAATCGTCACCTTCTGGAAGTAGCCCGTTCCCTTATGCTTTCCACTTCCCTTCCTTCATACCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGATGAATCCCTGGATTTTGGACTCGGGGGCCACAAATCACTTGACAGGTTTCTCGGAACATTTTGTCACT
TATACCCCCTGTGTCGATAATGAGAAAATCTGGATAGCCAATGGCTCTTTAGCTCCGATTGCTACAAAAGGACAAATAGTCCTCTTTAACAGTTTCTCCCTCCAG
AATGTTTTGCATGTGCCTAAGCTTTCTTACAATTTGTTATCTATCAGTAAGATCACCCGTGAGCTGCACTGTAAAGCTACTTTCTTACCTAAGTCTGTTTGCTTT
CAGGACTTGAATTCAGGGAGGACGATTGGCACTGCCCGGTATAGCAGGGGACTTTACATCCTTAATGATGATACCTTCGGTAGTAGTATCTCTACGACTAGTTTA
CTGTCTTCCTATTTTAGTACCTCTGAACATGACTTTATGTTGTGGCATTTTCGATTAGGTCACCCGAACTTTACGTATATGAAATATTTGTTTCCCCATCTCTTT
CTTAAAATAGATGTCTCCTCATTATCTTGTGATGTGTGCATTCGAGCAAAACAACATCGTGTTTCTTTTCCCTCACAACCATATAAACCCACACAACCGTTTACC
CTTATCCATAGTGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTAGGAAAATGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTAC
CTTATCACCGATAAATCTGAGGTTTCTGCTATTTTCCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAATTGCTATTCTTCGGAGTGAAAATGGT
CGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAGCCTCTAAGGGGATTGTTCACCAAAACTCGTGCACCTACACTCCTCAACAAAATGGAGTGGCAGAGCAA
AAAAATCGTCACCTTCTGGAAGTAGCCCGTTCCCTTATGCTTTCCACTTCCCTTCCTTCATACCTGTAG
Protein sequenceShow/hide protein sequence
MSQSFGLISVDGMNPWILDSGATNHLTGFSEHFVTYTPCVDNEKIWIANGSLAPIATKGQIVLFNSFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPKSVCF
QDLNSGRTIGTARYSRGLYILNDDTFGSSISTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFT
LIHSDVWGPSKVTTSSRKMWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILRSENGREFQNHNLSEFLASKGIVHQNSCTYTPQQNGVAEQ
KNRHLLEVARSLMLSTSLPSYL