; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0064091 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0064091
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:4631694..4632562
RNA-Seq ExpressionCmc03g0064091
SyntenyCmc03g0064091
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-11880.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

KAA0037582.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-11880.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-11880.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

TYK06334.1 putative polyprotein [Cucumis melo var. makuwa]1.2e-11880.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-11880.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase5.8e-11980.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

A0A5A7U2V7 Reverse transcriptase5.8e-11980.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

A0A5A7UUL6 Reverse transcriptase5.8e-11980.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

A0A5D3BHI1 Reverse transcriptase5.8e-11980.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

A0A5D3BS67 Reverse transcriptase5.8e-11980.43Show/hide
Query:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY
        MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV IRNKYPLPRIDDLFDQLRGAALFSKI+LRSGYHQLKVRESDIAKTAF TRYGHY
Subjt:  MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHY

Query:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA
        EF                                           RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA
Subjt:  EF-------------------------------------------RESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEA

Query:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        V NWERPISA +VR FLGLAGYYR FIEDFSRLALPLTAL RKNVKFEW DKCEQSFQELKKRLVTAPILAL VTGKDYVI
Subjt:  VFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.7e-3829.72Show/hide
Query:  QLQELVDKGYIRPSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTR
        Q+Q+++++G IR S SP+ +P+  V KK         R+ IDYR+LN++ + +++P+P +D++  +L     F+ I+L  G+HQ+++    ++KTAF+T+
Subjt:  QLQELVDKGYIRPSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTR

Query:  YGHYE----------------------------------------FRESHEEHLR---IVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQ
        +GHYE                                        F  S +EHL+   +V + L +  L  +  KCEF  ++  FLGHV++  G+  +P+
Subjt:  YGHYE----------------------------------------FRESHEEHLR---IVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQ

Query:  KVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLD-KCEQSFQELKKRLVTAPILALSVTGKDYVI
        K+EA+  +  P    +++ FLGL GYYR FI +F+ +A P+T  ++KN+K +  + + + +F++LK  +   PIL +    K + +
Subjt:  KVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLD-KCEQSFQELKKRLVTAPILALSVTGKDYVI

P10394 Retrovirus-related Pol polyprotein from transposon 4128.2e-3832.87Show/hide
Query:  QLQELVDKGYIRPSVSPWGAPVLFVKKKDG------TLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTT
        Q+Q+L+    + PSVS + +P+L V KK          RL IDYRQ+NK  + +K+PLPRIDD+ DQL  A  FS ++L SG+HQ+++ E     T+F+T
Subjt:  QLQELVDKGYIRPSVSPWGAPVLFVKKKDG------TLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTT

Query:  RYGHYEF------------------------------------------RESHE-EHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDP
          G Y F                                           E H  ++L  V    RE  L     KC F++ +V FLGH  + KG+  D 
Subjt:  RYGHYEF------------------------------------------RESHE-EHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDP

Query:  QKVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI
        +K + + N+  P  A   R F+    YYR FI++F+  +  +T L +KNV FEW D+C+++F  LK +L+   +L      K++ I
Subjt:  QKVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPILALSVTGKDYVI

P20825 Retrovirus-related Pol polyprotein from transposon 2971.7e-3832.4Show/hide
Query:  QLQELVDKGYIRPSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTR
        Q+QE++++G IR S SP+ +P   V KK         R+ IDYR+LN++ I ++YP+P +D++  +L     F+ I+L  G+HQ+++ E  I+KTAF+T+
Subjt:  QLQELVDKGYIRPSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTR

Query:  YGHYE----------------------------------------FRESHEEHL---RIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQ
         GHYE                                        F  S  EHL   ++V   L +  L  +  KCEF  ++  FLGH+V+  G+  +P 
Subjt:  YGHYE----------------------------------------FRESHEEHL---RIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQ

Query:  KVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCE--QSFQELKKRLVTAPILALSVTGKDYVI
        KV+A+ ++  P    ++R FLGL GYYR FI +++ +A P+T+ ++K  K +   K E  ++F++LK  ++  PIL L    K +V+
Subjt:  KVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCE--QSFQELKKRLVTAPILALSVTGKDYVI

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein9.7e-3933.46Show/hide
Query:  LQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHYEF
        +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK  I + +PLPRID+L  ++  A +F+ ++L SGYHQ+ +   D  KTAF T  G YE+
Subjt:  LQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHYEF

Query:  R-----------------------------------------ESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEAVFNW
                                                  E H +HL  VL+ L+ + L  K  KC+F  E+  FLG+ +  + ++    K  A+ ++
Subjt:  R-----------------------------------------ESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEAVFNW

Query:  ERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPIL
          P +  + + FLG+  YYR FI + S++A P+   I    K +W +K +++ ++LK  L  +P+L
Subjt:  ERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPIL

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.7e-3833.46Show/hide
Query:  LQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHYEF
        +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK  I + +PLPRID+L  ++  A +F+ ++L SGYHQ+ +   D  KTAF T  G YE+
Subjt:  LQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHYEF

Query:  R-----------------------------------------ESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEAVFNW
                                                  E H +HL  VL+ L+ + L  K  KC+F  E+  FLG+ +  + ++    K  A+ ++
Subjt:  R-----------------------------------------ESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEAVFNW

Query:  ERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPIL
          P +  + + FLG+  YYR FI + S++A P+   I    K +W +K +++  +LK  L  +P+L
Subjt:  ERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKCEQSFQELKKRLVTAPIL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.6e-2341.46Show/hide
Query:  HLRIVLQTLREKQLYAKFSKCEFWLEQVVFLG--HVVSTKGVSVDPQKVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEW
        HL +VLQ   + Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+  W  P +  ++R FLGL GYYR F++++ ++  PLT L++KN   +W
Subjt:  HLRIVLQTLREKQLYAKFSKCEFWLEQVVFLG--HVVSTKGVSVDPQKVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEW

Query:  LDKCEQSFQELKKRLVTAPILAL
         +    +F+ LK  + T P+LAL
Subjt:  LDKCEQSFQELKKRLVTAPILAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGCTTTTTGTGAAAAAGAAAGATGGTACCCTTAGATTA
TGTATTGACTATAGACAGTTAAACAAGGTTAGAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAAGGGGAGCAGCGTTGTTCTCT
AAGATTAACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTTACAACGAGGTATGGACATTATGAGTTTCGAGAATCT
CATGAGGAACATTTGAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGG
CATGTAGTTTCAACAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTTTCAATTGGGAAAGACCAATTAGTGCGATAAAAGTACGTATTTTCCTGGGT
TTGGCAGGATACTATAGGTGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGATAAGGAAGAATGTTAAGTTTGAGTGGTTAGATAAATGC
GAGCAAAGTTTTCAGGAGTTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTTCTGTAACAGGGAAGGACTATGTGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGCTTTTTGTGAAAAAGAAAGATGGTACCCTTAGATTA
TGTATTGACTATAGACAGTTAAACAAGGTTAGAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAAGGGGAGCAGCGTTGTTCTCT
AAGATTAACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTTACAACGAGGTATGGACATTATGAGTTTCGAGAATCT
CATGAGGAACATTTGAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGG
CATGTAGTTTCAACAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTTTCAATTGGGAAAGACCAATTAGTGCGATAAAAGTACGTATTTTCCTGGGT
TTGGCAGGATACTATAGGTGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGATAAGGAAGAATGTTAAGTTTGAGTGGTTAGATAAATGC
GAGCAAAGTTTTCAGGAGTTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTTCTGTAACAGGGAAGGACTATGTGATTTAA
Protein sequenceShow/hide protein sequence
MQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVRIRNKYPLPRIDDLFDQLRGAALFSKINLRSGYHQLKVRESDIAKTAFTTRYGHYEFRES
HEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSTKGVSVDPQKVEAVFNWERPISAIKVRIFLGLAGYYRCFIEDFSRLALPLTALIRKNVKFEWLDKC
EQSFQELKKRLVTAPILALSVTGKDYVI