; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0064101 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0064101
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr03:4663728..4664741
RNA-Seq ExpressionCmc03g0064101
SyntenyCmc03g0064101
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054927.1 uncharacterized protein E6C27_scaffold43052G00580 [Cucumis melo var. makuwa]1.2e-17592.56Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        MLIKIKEKVKKQFSASFFAVAKYPEWVAN VTVPKKD KVRMF+DYRDLNRTSPKDNFPLPYIDVLVDNT GYSTFSFMDGFSRYNQIKMAPEDREKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTFYYKVMPFGLK+ GETYQKVMVTLFH LMHKEIEFYVDDMIAKS+PGEG VDI RK+FDRLRN QLKLNPAKCIFGVSS KLLGF+VSEEGIKL
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        DLDKVKAIVDLKPPKTQKNVRSFLGRLNYI RFISHITQTCE ILRLLRKSEICCWNEN QKAFDKIK YLQNP ILVP T RRPLILYL MREE IGYV
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEKRVV
        LGQHDSLGRKERVVYYL KKFT YESKYSLLEKRVV
Subjt:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEKRVV

TYK00092.1 protein NYNRIN-like [Cucumis melo var. makuwa]3.5e-14882.19Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        MLIKIKE+VKKQF A F AVAKYP WVAN V VPKKDGKVRM VDYRDLNR SPKDNFPLP+IDVLVDNTAG+STFSFMDGFS YNQIKMAPED+EKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTF YKVMPFGLK+AG TYQ+ MVTLFHDLMHKEIE YVDDMIAKS+  E HV  L KLF+RLR FQLKLNPAKCIFGVSS KLLGF+VS EGIK+
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        DLDK+KAIVDL+PPKT+K VRSFLGRLNYI RFISH+TQTCEPIL+LLRK+EIC WNE+CQKAFDKIK YLQ+PPILVP T  RPLILYLT+ E  +G V
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKK
        LGQHDS G+KE+ VYYLSKK
Subjt:  LGQHDSLGRKERVVYYLSKK

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]1.1e-14174.17Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        +LIK+KE+V+KQ  A F  V+KYPEWVAN V VPKKDGKVRM VDYRDLNR SPKDNFPLP+ID+LVDNTAGYSTFSFMDGFS YNQIKMA EDREKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTF YKVMPFGLK+AG TYQ+ MVTLFHD+MHKEIE YVDDMIAKSK  E H  IL+KLFDRLR +QLKLNP+KC FG +S KLLGF+VSEEGIK+
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        D DKVKAI+D+  P+T+K VR+FLGRLNYI RFISH+T TCEPI +LLRK+    WNE+C++AF+KIK YLQ+PP+L+P    RPLILYLT+ E  +G V
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK
        LGQHD  G+KE  +YYLSKKFT YESKYS+LE+
Subjt:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]1.1e-14174.17Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        +LIK+KE+V+KQ  A F  V+KYPEWVAN V VPKKDGKVRM VDYRDLNR SPKDNFPLP+ID+LVDNTAGYSTFSFMDGFS YNQIKMA EDREKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTF YKVMPFGLK+AG TYQ+ MVTLFHD+MHKEIE YVDDMIAKSK  E H  IL+KLFDRLR +QLKLNP+KC FG +S KLLGF+VSEEGIK+
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        D DKVKAI+D+  P+T+K VR+FLGRLNYI RFISH+T TCEPI +LLRK+    WNE+C++AF+KIK YLQ+PP+L+P    RPLILYLT+ E  +G V
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK
        LGQHD  G+KE  +YYLSKKFT YESKYS+LE+
Subjt:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK

XP_031742360.1 uncharacterized protein LOC116404324 [Cucumis sativus]1.1e-14174.17Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        +LIK+KE+V+KQ  A F  V+KYPEWVAN V VPKKDGKVRM VDYRDLNR SPKDNFPLP+ID+LVDNTAGYSTFSFMDGFS YNQIKMA EDREKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTF YKVMPFGLK+AG TYQ+ MVTLFHD+MHKEIE YVDDMIAKSK  E H  IL+KLFDRLR +QLKLNP+KC FG +S KLLGF+VSEEGIK+
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        D DKVKAI+D+  P+T+K VR+FLGRLNYI RFISH+T TCEPI +LLRK+    WNE+C++AF+KIK YLQ+PP+L+P    RPLILYLT+ E  +G V
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK
        LGQHD  G+KE  +YYLSKKFT YESKYS+LE+
Subjt:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK

TrEMBL top hitse value%identityAlignment
A0A5D3BMZ2 Protein NYNRIN-like1.7e-14882.19Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        MLIKIKE+VKKQF A F AVAKYP WVAN V VPKKDGKVRM VDYRDLNR SPKDNFPLP+IDVLVDNTAG+STFSFMDGFS YNQIKMAPED+EKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTF YKVMPFGLK+AG TYQ+ MVTLFHDLMHKEIE YVDDMIAKS+  E HV  L KLF+RLR FQLKLNPAKCIFGVSS KLLGF+VS EGIK+
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        DLDK+KAIVDL+PPKT+K VRSFLGRLNYI RFISH+TQTCEPIL+LLRK+EIC WNE+CQKAFDKIK YLQ+PPILVP T  RPLILYLT+ E  +G V
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKK
        LGQHDS G+KE+ VYYLSKK
Subjt:  LGQHDSLGRKERVVYYLSKK

A0A5D3DGJ2 Uncharacterized protein5.6e-17692.56Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        MLIKIKEKVKKQFSASFFAVAKYPEWVAN VTVPKKD KVRMF+DYRDLNRTSPKDNFPLPYIDVLVDNT GYSTFSFMDGFSRYNQIKMAPEDREKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTFYYKVMPFGLK+ GETYQKVMVTLFH LMHKEIEFYVDDMIAKS+PGEG VDI RK+FDRLRN QLKLNPAKCIFGVSS KLLGF+VSEEGIKL
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        DLDKVKAIVDLKPPKTQKNVRSFLGRLNYI RFISHITQTCE ILRLLRKSEICCWNEN QKAFDKIK YLQNP ILVP T RRPLILYL MREE IGYV
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEKRVV
        LGQHDSLGRKERVVYYL KKFT YESKYSLLEKRVV
Subjt:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEKRVV

A0A6J1CNY7 Ribonuclease H9.0e-14274.17Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        MLIKIK++V+KQ  A F  ++ YPEWVAN V VPKK+G+VRM VDYRDLNR SPKDNFPLP+IDVLVDNTAG+STFSFMDGFS YNQIKMAPEDREKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTFYYKVM FGLK+AG TYQ+ MVTLFHDLMHKEIE YVDDMIAKSK GE H  ILRKLFDRLR F+LKLNP KCIFG ++ KLLGF+VS+EGIK+
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        +LDKVKAI+++ PP+TQK VR FLGRLNYI RFISH+T TCEPI +LLRK+    W+ENCQ A DKIK YL +PPILVP T  RP ILYL + E  +G V
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK
        LGQHD  GRKE+ +YYLSKKFT  E++YS +EK
Subjt:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.3e-14074.17Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        MLIK+K++V+KQ  A F  V+ YPEWVAN V VPKK+G+VRM VDYRDLNR SPKDNFPLP+IDVLVDNTAG+STFSFMDGFS YN+IKMAPEDREKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTF YKVM FGLK+AG TYQ+ MVTLFHDLMHKEIE YVDDMIAKS+ GE H  +LRKLF+RLR FQLKLNP KC FGV+S KLLGF+V +EGIK+
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        D DKVKAI+++ PPKT K VR FLGRLNYI RFISH+T TCEPI +LLRK+    W E+CQ AFDKIK Y Q+PPILVP TS RPLILYLTM E  +G V
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK
        LGQHD  GRKE+ +YYLSKKFT  E+ YS +EK
Subjt:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK

A0A6J1DZ90 Ribonuclease H4.9e-14073.87Show/hide
Query:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF
        MLIKIK++V+KQ  A F  V+ YPEWVAN V VPKK+G+VRM VDYRDLNR SPKDNFPLP+IDVLVDNTAG+STFSFM GFS  N IKMAPEDREKTTF
Subjt:  MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTF

Query:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL
        ITLWGTF YKVMPFGLK+ G TYQ+ MVTLFHDLMHKEIE YVDDMIAKSK GE H  ILRKLFDRLR F+LKLNP KCIFG ++ KLLGF+VS+EGIK+
Subjt:  ITLWGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKL

Query:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV
        D DKVKAI+++ PP+TQK VR FLGRLNYI RFISH+T TCEPI +LLRK+    W+E+CQ AF+KIK YLQ+PPILVP T  RPLILYLT+ E  +G V
Subjt:  DLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYV

Query:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK
        LGQHD  GRKE+ +YYLSKKFT  E++YS +EK
Subjt:  LGQHDSLGRKERVVYYLSKKFTRYESKYSLLEK

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.6e-4131.8Show/hide
Query:  VPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITLWGTFYYKVMPFGLKSAGETYQKVMVTLFH
        VPKK+G +RM VDY+ LN+    + +PLP I+ L+    G + F+ +D  S Y+ I++   D  K  F    G F Y VMP+G+ +A   +Q  + T+  
Subjt:  VPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITLWGTFYYKVMPFGLKSAGETYQKVMVTLFH

Query:  DLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVR
        +     +  Y+DD++  SK    HV  ++ +  +L+N  L +N AKC F  S  K +G+ +SE+G     + +  ++  K PK +K +R FLG +NY+ +
Subjt:  DLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVR

Query:  FISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLGQ-HDSLGRKERVVYYLSKKFTRYESKYSLL
        FI   +Q   P+  LL+K     W     +A + IK  L +PP+L      + ++L     +  +G VL Q HD    K   V Y S K ++ +  YS+ 
Subjt:  FISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLGQ-HDSLGRKERVVYYLSKKFTRYESKYSLL

Query:  EKRVV
        +K ++
Subjt:  EKRVV

P0CT35 Transposon Tf2-2 polyprotein6.6e-4131.8Show/hide
Query:  VPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITLWGTFYYKVMPFGLKSAGETYQKVMVTLFH
        VPKK+G +RM VDY+ LN+    + +PLP I+ L+    G + F+ +D  S Y+ I++   D  K  F    G F Y VMP+G+ +A   +Q  + T+  
Subjt:  VPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITLWGTFYYKVMPFGLKSAGETYQKVMVTLFH

Query:  DLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVR
        +     +  Y+DD++  SK    HV  ++ +  +L+N  L +N AKC F  S  K +G+ +SE+G     + +  ++  K PK +K +R FLG +NY+ +
Subjt:  DLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVR

Query:  FISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLGQ-HDSLGRKERVVYYLSKKFTRYESKYSLL
        FI   +Q   P+  LL+K     W     +A + IK  L +PP+L      + ++L     +  +G VL Q HD    K   V Y S K ++ +  YS+ 
Subjt:  FISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLGQ-HDSLGRKERVVYYLSKKFTRYESKYSLL

Query:  EKRVV
        +K ++
Subjt:  EKRVV

P0CT41 Transposon Tf2-12 polyprotein6.6e-4131.8Show/hide
Query:  VPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITLWGTFYYKVMPFGLKSAGETYQKVMVTLFH
        VPKK+G +RM VDY+ LN+    + +PLP I+ L+    G + F+ +D  S Y+ I++   D  K  F    G F Y VMP+G+ +A   +Q  + T+  
Subjt:  VPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITLWGTFYYKVMPFGLKSAGETYQKVMVTLFH

Query:  DLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVR
        +     +  Y+DD++  SK    HV  ++ +  +L+N  L +N AKC F  S  K +G+ +SE+G     + +  ++  K PK +K +R FLG +NY+ +
Subjt:  DLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVR

Query:  FISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLGQ-HDSLGRKERVVYYLSKKFTRYESKYSLL
        FI   +Q   P+  LL+K     W     +A + IK  L +PP+L      + ++L     +  +G VL Q HD    K   V Y S K ++ +  YS+ 
Subjt:  FISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLGQ-HDSLGRKERVVYYLSKKFTRYESKYSLL

Query:  EKRVV
        +K ++
Subjt:  EKRVV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.3e-4636.2Show/hide
Query:  KIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITL
        +I + V+K     F   +K P   +  V VPKKDG  R+ VDYR LN+ +  D FPLP ID L+        F+ +D  S Y+QI M P+DR KT F+T 
Subjt:  KIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITL

Query:  WGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLD
         G + Y VMPFGL +A  T+ + M   F DL  + +  Y+DD++  S+  E H   L  + +RL+N  L +   KC F     + LG+ +  + I     
Subjt:  WGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLD

Query:  KVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPI-LRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLG
        K  AI D   PKT K  + FLG +NY  RFI + ++  +PI L +  KS+   W E   KA +K+K  L N P+LVP  ++    L     ++ IG VL 
Subjt:  KVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPI-LRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLG

Query:  QHDSLGRKERVVYYLSKKFTRYESKY
        + D+  +   VV Y SK     +  Y
Subjt:  QHDSLGRKERVVYYLSKKFTRYESKY

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.8e-4636.5Show/hide
Query:  KIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITL
        +I + V+K     F   +K P   +  V VPKKDG  R+ VDYR LN+ +  D FPLP ID L+        F+ +D  S Y+QI M P+DR KT F+T 
Subjt:  KIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITL

Query:  WGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLD
         G + Y VMPFGL +A  T+ + M   F DL  + +  Y+DD++  S+  E H   L  + +RL+N  L +   KC F     + LG+ +  + I     
Subjt:  WGTFYYKVMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLD

Query:  KVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPI-LRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLG
        K  AI D   PKT K  + FLG +NY  RFI + ++  +PI L +  KS+   W E   KA DK+K  L N P+LVP  ++    L     ++ IG VL 
Subjt:  KVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPI-LRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLG

Query:  QHDSLGRKERVVYYLSKKFTRYESKY
        + D+  +   VV Y SK     +  Y
Subjt:  QHDSLGRKERVVYYLSKKFTRYESKY

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.1e-0930.25Show/hide
Query:  QLKLNPAKCIFGVSSRKLLG--FLVSEEGIKLDLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIK
        Q   N  KC FG      LG   ++S EG+  D  K++A+V    PK    +R FLG   Y  RF+ +  +   P+  LL+K+ +  W E    AF  +K
Subjt:  QLKLNPAKCIFGVSSRKLLG--FLVSEEGIKLDLDKVKAIVDLKPPKTQKNVRSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIK

Query:  VYLQNPPILVPATSRRPLI
          +   P+L     + P +
Subjt:  VYLQNPPILVPATSRRPLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATCAAGATAAAAGAAAAGGTTAAAAAACAATTTAGTGCTAGTTTTTTTGCAGTGGCCAAATACCCAGAATGGGTCGCTAATACCGTCACAGTTCCTAAGAAGGA
TGGAAAGGTCAGAATGTTCGTGGACTATAGAGATTTGAATCGGACAAGTCCAAAAGACAATTTTCCCCTTCCTTACATCGATGTACTAGTAGATAATACAGCTGGATATT
CTACTTTTTCATTTATGGATGGATTTTCAAGGTACAATCAAATCAAGATGGCACCAGAAGATCGAGAAAAGACAACGTTTATCACTTTATGGGGAACTTTTTATTACAAA
GTCATGCCTTTTGGTCTAAAAAGTGCAGGGGAAACTTACCAGAAAGTTATGGTTACGTTGTTCCATGACTTGATGCATAAGGAAATAGAATTTTATGTTGATGATATGAT
AGCAAAATCTAAACCTGGAGAAGGGCATGTAGATATCCTTCGCAAGCTTTTTGATAGGCTACGAAATTTTCAATTGAAGCTTAATCCAGCAAAGTGCATATTCGGGGTAT
CATCTAGAAAATTATTAGGGTTTCTTGTTAGTGAGGAGGGAATTAAATTAGATCTAGATAAAGTTAAGGCGATAGTGGATTTAAAACCACCAAAAACTCAAAAGAATGTT
AGGAGCTTTTTAGGTAGACTAAATTACATTGTGCGATTTATTTCACACATCACTCAAACTTGCGAGCCAATACTAAGGCTCCTTCGTAAGAGTGAGATATGTTGTTGGAA
CGAGAATTGCCAAAAAGCCTTTGATAAAATCAAAGTTTATCTGCAAAATCCCCCAATTCTTGTGCCAGCAACTTCCAGGCGACCATTGATCTTATACTTGACGATGAGGG
AAGAATTAATTGGTTATGTGTTGGGACAACATGATTCTTTAGGAAGAAAAGAGCGAGTTGTTTATTATTTAAGCAAGAAGTTCACGAGATACGAGTCAAAGTACTCATTG
TTGGAAAAACGTGTTGTGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGATCAAGATAAAAGAAAAGGTTAAAAAACAATTTAGTGCTAGTTTTTTTGCAGTGGCCAAATACCCAGAATGGGTCGCTAATACCGTCACAGTTCCTAAGAAGGA
TGGAAAGGTCAGAATGTTCGTGGACTATAGAGATTTGAATCGGACAAGTCCAAAAGACAATTTTCCCCTTCCTTACATCGATGTACTAGTAGATAATACAGCTGGATATT
CTACTTTTTCATTTATGGATGGATTTTCAAGGTACAATCAAATCAAGATGGCACCAGAAGATCGAGAAAAGACAACGTTTATCACTTTATGGGGAACTTTTTATTACAAA
GTCATGCCTTTTGGTCTAAAAAGTGCAGGGGAAACTTACCAGAAAGTTATGGTTACGTTGTTCCATGACTTGATGCATAAGGAAATAGAATTTTATGTTGATGATATGAT
AGCAAAATCTAAACCTGGAGAAGGGCATGTAGATATCCTTCGCAAGCTTTTTGATAGGCTACGAAATTTTCAATTGAAGCTTAATCCAGCAAAGTGCATATTCGGGGTAT
CATCTAGAAAATTATTAGGGTTTCTTGTTAGTGAGGAGGGAATTAAATTAGATCTAGATAAAGTTAAGGCGATAGTGGATTTAAAACCACCAAAAACTCAAAAGAATGTT
AGGAGCTTTTTAGGTAGACTAAATTACATTGTGCGATTTATTTCACACATCACTCAAACTTGCGAGCCAATACTAAGGCTCCTTCGTAAGAGTGAGATATGTTGTTGGAA
CGAGAATTGCCAAAAAGCCTTTGATAAAATCAAAGTTTATCTGCAAAATCCCCCAATTCTTGTGCCAGCAACTTCCAGGCGACCATTGATCTTATACTTGACGATGAGGG
AAGAATTAATTGGTTATGTGTTGGGACAACATGATTCTTTAGGAAGAAAAGAGCGAGTTGTTTATTATTTAAGCAAGAAGTTCACGAGATACGAGTCAAAGTACTCATTG
TTGGAAAAACGTGTTGTGTTTTAG
Protein sequenceShow/hide protein sequence
MLIKIKEKVKKQFSASFFAVAKYPEWVANTVTVPKKDGKVRMFVDYRDLNRTSPKDNFPLPYIDVLVDNTAGYSTFSFMDGFSRYNQIKMAPEDREKTTFITLWGTFYYK
VMPFGLKSAGETYQKVMVTLFHDLMHKEIEFYVDDMIAKSKPGEGHVDILRKLFDRLRNFQLKLNPAKCIFGVSSRKLLGFLVSEEGIKLDLDKVKAIVDLKPPKTQKNV
RSFLGRLNYIVRFISHITQTCEPILRLLRKSEICCWNENCQKAFDKIKVYLQNPPILVPATSRRPLILYLTMREELIGYVLGQHDSLGRKERVVYYLSKKFTRYESKYSL
LEKRVVF