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Cmc03g0064231 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0064231
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr03:4852036..4853015
RNA-Seq ExpressionCmc03g0064231
SyntenyCmc03g0064231
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057477.1 Copia protein [Cucumis melo var. makuwa]5.6e-2787.67Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        MYQSTI ALQYLTNTRS+ISYIVNHLSQFLQ+  DLHWQ VKRVLRYIS TKHYGILFQ NTDL+ITAFSDAD
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

TYK30173.1 Copia protein [Cucumis melo var. makuwa]5.6e-2787.67Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        MYQSTI ALQYLTNTRS+ISYIVNHLSQFLQ+  DLHWQ VKRVLRYIS TKHYGILFQ NTDL+ITAFSDAD
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

XP_038896547.1 secreted RxLR effector protein 161-like [Benincasa hispida]4.6e-2167.12Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        +++STIGALQYLT+TR DI++IVNHLS+FL+   ++HWQ  KRVLRYIS+T+H+G+LFQPNTDL +T FSDA+
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

XP_038896671.1 secreted RxLR effector protein 161-like [Benincasa hispida]3.5e-2167.12Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        +Y+ST+G LQYLT TR DI+YIVNHLSQFLQ   D HWQ VKRVLRY+S+TK++G+ FQP++DL+I+ +SDAD
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

XP_038902368.1 secreted RxLR effector protein 161-like [Benincasa hispida]7.6e-2473.97Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        +Y+STIGALQYLT TR DI+YIVNHLS+FLQ  ID+HWQ VKR+LRYIS+TKH+G+LFQP++DL+I A+SDAD
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

TrEMBL top hitse value%identityAlignment
A0A5A7US38 Copia protein2.7e-2787.67Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        MYQSTI ALQYLTNTRS+ISYIVNHLSQFLQ+  DLHWQ VKRVLRYIS TKHYGILFQ NTDL+ITAFSDAD
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

A0A5D3BWM8 Putative mitochondrial protein5.5e-2065.75Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        +Y++TIGALQYLTNTR DI+YIVN LSQFLQ+  DLHW+ VKRVL+Y+S TK +G++FQ   DL I+ +SDAD
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

A0A5D3E251 Copia protein2.7e-2787.67Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        MYQSTI ALQYLTNTRS+ISYIVNHLSQFLQ+  DLHWQ VKRVLRYIS TKHYGILFQ NTDL+ITAFSDAD
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

A0A6J1CS58 uncharacterized protein LOC1110138151.1e-2067.12Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        +Y+STIGALQYLTNTR DI+YIVNHLSQFL++  D+HWQ VKRVLRY+S TK  G+  QPN  +++TA+SD D
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

A0A6J1DM39 uncharacterized protein LOC1110218221.1e-2065.75Show/hide
Query:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        +Y+ST+GALQYLTNTR DI+YIVNHLSQFL++  D+HW  VKRVLRY+S TKH G+  QP+  +++TA+SDAD
Subjt:  MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1612.5e-0943.84Show/hide
Query:  YQSTIGALQYL-TNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        Y S +GA+ YL   TR D++  V  LSQF  +    HWQ +KRVLRY+ ST+ YG+ F       +  +SDAD
Subjt:  YQSTIGALQYL-TNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

P25600 Putative transposon Ty5-1 protein YCL074W7.9e-0840.28Show/hide
Query:  YQSTIGALQYLTNT-RSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDA
        YQS +G L +  NT R DISY V+ LS+FL+E   +H +  +RVLRY+ +T+   + ++  + L +T + DA
Subjt:  YQSTIGALQYLTNT-RSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDA

P92519 Uncharacterized mitochondrial protein AtMg008101.1e-0944.44Show/hide
Query:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        ++S +GALQYLT TR DISY VN + Q + E     +  +KRVLRY+  T  +G+    N+ L + AF D+D
Subjt:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.3e-1347.22Show/hide
Query:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        Y+  +G+LQYL  TR DISY VN LSQF+    + H Q +KR+LRY++ T ++GI  +    L++ A+SDAD
Subjt:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.7e-1347.22Show/hide
Query:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        Y+  +G+LQYL  TR D+SY VN LSQ++    D HW  +KRVLRY++ T  +GI  +    L++ A+SDAD
Subjt:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.6e-0940.85Show/hide
Query:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDA
        Y+  IG L YL  TR DIS+ VN LSQF +     H Q V ++L YI  T   G+ +    ++ +  FSDA
Subjt:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDA

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.7e-0841.27Show/hide
Query:  YLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        YLT TR D+++ VN LSQF   S     Q V +VL Y+  T   G+ +   +DL + AF+D+D
Subjt:  YLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD

ATMG00810.1 DNA/RNA polymerases superfamily protein7.9e-1144.44Show/hide
Query:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD
        ++S +GALQYLT TR DISY VN + Q + E     +  +KRVLRY+  T  +G+    N+ L + AF D+D
Subjt:  YQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCAAAGTACTATTGGGGCTCTTCAGTATCTCACTAATACTCGATCTGACATATCCTATATAGTCAATCACCTTAGCCAATTTTTGCAGGAATCTATTGATCTTCA
TTGGCAGGGTGTTAAACGGGTACTTCGTTACATCAGTAGCACTAAGCATTATGGCATTTTGTTTCAACCAAATACTGACTTGACTATTACAGCTTTCTCTGATGCCGATT
GA
mRNA sequenceShow/hide mRNA sequence
GGATATATTTATGTATCAAAGTACTATTGGGGCTCTTCAGTATCTCACTAATACTCGATCTGACATATCCTATATAGTCAATCACCTTAGCCAATTTTTGCAGGAATCTA
TTGATCTTCATTGGCAGGGTGTTAAACGGGTACTTCGTTACATCAGTAGCACTAAGCATTATGGCATTTTGTTTCAACCAAATACTGACTTGACTATTACAGCTTTCTCT
GATGCCGATTGAACTTCGAATACTGATGATCGCAAGTCTGTTGCTGCATACTGTGTTTTTGTGGGTAATAATTTGGTTTCTTGGTCTTCAAAGAAACAAAATGTTGTAGC
TCGTTCAAGCACCGAATCAGAATATCGTGCATTAGCATATGCTACATCAAAAATTGTTTGGCTCACACAACTACTTTCTGAACTCTTTATTCTGATTCATCGTAAACCTA
TTTTGTGGTGTGATAATATTAGTGCAGGGGCGCTTGCAACCAATCCTGTCTTTCATGCTAGAACCAAGCACATTTAGATAGATGTGCATTTCGTTCGTGATCAAGTTCTT
CGTGGTGAACTTGAAGTTCGATATATACCTTCATCAGATCAATTGGCATATTGTCTTACAAAGCCTCTTACTCATTCTCATTTTCATTATTTGAGGTCCAAACTTGTGGT
ACTTGAATTACCCTCTCGTTTGATGGAGAATGTTAGAGAAGGTTGCCACACAACCAGTACACATGGATCCTCAACAAATGCCACCTCAGCACCCTTACAGAATTATTAAA
AAAAATTCCAAAACATTCAAATGGTTAGAAATTAGATGGAGGAAGATTTCTTTACCAATGACTCGCTTACACTTGTGTAAATTGTATTAGGTCTTTACTATTATTTTATT
ATCTACCTTTCCAACAGTCTAGGGTTTACCATTGTATAAATATGTTCTTATCTTCATTTATTAATACAAGGGAGAAAAAGAAGAAATATTGTCTCTTAAG
Protein sequenceShow/hide protein sequence
MYQSTIGALQYLTNTRSDISYIVNHLSQFLQESIDLHWQGVKRVLRYISSTKHYGILFQPNTDLTITAFSDAD