; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0064341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0064341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr03:5013179..5013979
RNA-Seq ExpressionCmc03g0064341
SyntenyCmc03g0064341
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037650.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.3e-12083.83Show/hide
Query:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK
        M KG+ Q  +AKT+S+ITDEVINNE VLVPSA+VKKNH SSSIIG+ SAGITT+RKEKVDYTKMIA+LCYVSAIEPTSVENA  DEY IN MQEELLQFK
Subjt:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK

Query:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV
         NNV T V KPDGAN+IGTKWIFKNKTDES S+I NKARL+AQGYAQVEGVDFDE+F+ +ARLEAI LLLSISCFRKFKLF+MDVKSAFLNGYL EEVYV
Subjt:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV

Query:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA
        AQPKGF+D EF QYVYKLNKALYGLKQAPR WYERL MYLG+RGYSRGET++TLFINRTSTDLIVA
Subjt:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA

KAA0042206.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-10175.94Show/hide
Query:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK
        M KGD QP +AKTNSNITDEVINNE VLVPSAHVKKNHLSSSI+G+ SAGITT+ KEK                      NAL DEY INVMQEELLQFK
Subjt:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK

Query:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV
         NN+ T V KPD ANIIGTKWIFKNKTDESESVI N+ARLVAQGYAQV+GVDF+++F+ +ARLEAI LLLSISCFRKFKLFQMDVKSAFLNGYL EEVYV
Subjt:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV

Query:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA
        AQ K F+D EF QYVYK NKALYGLKQAPR WYE+L MYL +RGYSRGE DKTLFINRTST LIVA
Subjt:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA

KAA0054893.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.3e-14599.62Show/hide
Query:  GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN
        GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN
Subjt:  GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN

Query:  VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP
        VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP
Subjt:  VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP

Query:  KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIV
        KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLI+
Subjt:  KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIV

TYJ98295.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.3e-10579.09Show/hide
Query:  GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN
        GDLQP +AKTNSNITDEVINNE VLVPSAHVKKNH SSSIIGNLSAGITTR KEK                          DEY INVMQEELLQFK NN
Subjt:  GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN

Query:  VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP
        V T V KPDGANIIGTKWIFKNKTDES SV+ NKA LVAQGYAQVEGVDFDE+F+ +ARLEAI LLL ISCFRKFKLFQMDVKSAFLNGYL EEVYVAQP
Subjt:  VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP

Query:  KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA
        KGFID EF QYVYK+NKALYGLKQAPR WYERLI+YL +RGYS+GETDKTLFINRTSTDLIVA
Subjt:  KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA

TYK21447.1 uncharacterized protein E5676_scaffold609G001170 [Cucumis melo var. makuwa]2.6e-9874.34Show/hide
Query:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK
        M KGD QP NAKTNS ITDEVINNE V V S HVKKNH SSSIIG+ SAGITTRRKEKVDYTKMIA+LCYVS IEPTS+ENAL DEY IN MQ ELLQFK
Subjt:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK

Query:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV
         NNV T V KPDGANII TKWIFKNKTDES  VI NKARLVAQG               + R             RKFKLFQMDVKS FLNGYL EEVYV
Subjt:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV

Query:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIV
        AQPKGF+D EF QYVYKLNKALYGLKQAPR WYERL MYLG+RGY +GETDKTLFINRT+TDLI+
Subjt:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIV

TrEMBL top hitse value%identityAlignment
A0A5A7T2Q0 Gag-pol polyprotein4.5e-12083.83Show/hide
Query:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK
        M KG+ Q  +AKT+S+ITDEVINNE VLVPSA+VKKNH SSSIIG+ SAGITT+RKEKVDYTKMIA+LCYVSAIEPTSVENA  DEY IN MQEELLQFK
Subjt:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK

Query:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV
         NNV T V KPDGAN+IGTKWIFKNKTDES S+I NKARL+AQGYAQVEGVDFDE+F+ +ARLEAI LLLSISCFRKFKLF+MDVKSAFLNGYL EEVYV
Subjt:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV

Query:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA
        AQPKGF+D EF QYVYKLNKALYGLKQAPR WYERL MYLG+RGYSRGET++TLFINRTSTDLIVA
Subjt:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA

A0A5D3BIP9 Gag-pol polyprotein6.3e-10679.09Show/hide
Query:  GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN
        GDLQP +AKTNSNITDEVINNE VLVPSAHVKKNH SSSIIGNLSAGITTR KEK                          DEY INVMQEELLQFK NN
Subjt:  GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN

Query:  VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP
        V T V KPDGANIIGTKWIFKNKTDES SV+ NKA LVAQGYAQVEGVDFDE+F+ +ARLEAI LLL ISCFRKFKLFQMDVKSAFLNGYL EEVYVAQP
Subjt:  VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP

Query:  KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA
        KGFID EF QYVYK+NKALYGLKQAPR WYERLI+YL +RGYS+GETDKTLFINRTSTDLIVA
Subjt:  KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA

A0A5D3CI39 Gag-pol polyprotein6.2e-14699.62Show/hide
Query:  GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN
        GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN
Subjt:  GDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNN

Query:  VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP
        VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP
Subjt:  VLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQP

Query:  KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIV
        KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLI+
Subjt:  KGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIV

A0A5D3DCR2 Reverse transcriptase Ty1/copia-type domain-containing protein1.3e-9874.34Show/hide
Query:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK
        M KGD QP NAKTNS ITDEVINNE V V S HVKKNH SSSIIG+ SAGITTRRKEKVDYTKMIA+LCYVS IEPTS+ENAL DEY IN MQ ELLQFK
Subjt:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK

Query:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV
         NNV T V KPDGANII TKWIFKNKTDES  VI NKARLVAQG               + R             RKFKLFQMDVKS FLNGYL EEVYV
Subjt:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV

Query:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIV
        AQPKGF+D EF QYVYKLNKALYGLKQAPR WYERL MYLG+RGY +GETDKTLFINRT+TDLI+
Subjt:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIV

A0A5D3DSN1 Gag-pol polyprotein9.4e-10275.94Show/hide
Query:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK
        M KGD QP +AKTNSNITDEVINNE VLVPSAHVKKNHLSSSI+G+ SAGITT+ KEK                      NAL DEY INVMQEELLQFK
Subjt:  MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFK

Query:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV
         NN+ T V KPD ANIIGTKWIFKNKTDESESVI N+ARLVAQGYAQV+GVDF+++F+ +ARLEAI LLLSISCFRKFKLFQMDVKSAFLNGYL EEVYV
Subjt:  CNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYV

Query:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA
        AQ K F+D EF QYVYK NKALYGLKQAPR WYE+L MYL +RGYSRGE DKTLFINRTST LIVA
Subjt:  AQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.6e-2740.12Show/hide
Query:  ELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYL
        EL   K NN  T   +P+  NI+ ++W+F  K +E  + I  KARLVA+G+ Q   +D++E+F+ +AR+ +   +LS+      K+ QMDVK+AFLNG L
Subjt:  ELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYL

Query:  YEEVYVAQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFI
         EE+Y+  P+G      S  V KLNKA+YGLKQA R W+E     L +  +     D+ ++I
Subjt:  YEEVYVAQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-3037.57Show/hide
Query:  EPTSVENALN---DEYGINVMQEELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLS
        EP S++  L+       +  MQEE+   + N     V  P G   +  KW+FK K D    ++  KARLV +G+ Q +G+DFDE FS + ++ +I  +LS
Subjt:  EPTSVENALN---DEYGINVMQEELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLS

Query:  ISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTS
        ++     ++ Q+DVK+AFL+G L EE+Y+ QP+GF        V KLNK+LYGLKQAPR WY +   ++  + Y +  +D  ++  R S
Subjt:  ISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTS

P92520 Uncharacterized mitochondrial protein AtMg008205.6e-1139.39Show/hide
Query:  EPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSIS
        EP SV  AL D      MQEEL     N     V  P   NI+G KW+FK K     ++   KARLVA+G+ Q EG+ F E++S + R   I  +L+++
Subjt:  EPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSIS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.9e-3134.15Show/hide
Query:  EVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHKPDG-ANIIG
        +++NN N    + H       + II           K    Y+  ++     +  EP +   AL DE   N M  E+     N+    V  P     I+G
Subjt:  EVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHKPDG-ANIIG

Query:  TKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFIDPEFSQYVYKL
         +WIF  K +   S+   KARLVA+GY Q  G+D+ E+FS + +  +I ++L ++  R + + Q+DV +AFL G L ++VY++QP GFID +   YV KL
Subjt:  TKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFIDPEFSQYVYKL

Query:  NKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLI
         KALYGLKQAPR WY  L  YL   G+    +D +LF+ +    ++
Subjt:  NKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.1e-3037.7Show/hide
Query:  EPTSVENALNDEYGINVMQEELLQFKCNNVLTFV-HKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSIS
        EP +   A+ D+     M  E+     N+    V   P    I+G +WIF  K +   S+   KARLVA+GY Q  G+D+ E+FS + +  +I ++L ++
Subjt:  EPTSVENALNDEYGINVMQEELLQFKCNNVLTFV-HKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSIS

Query:  CFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLI
          R + + Q+DV +AFL G L +EVY++QP GF+D +   YV +L KA+YGLKQAPR WY  L  YL   G+    +D +LF+ +    +I
Subjt:  CFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFIDPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.2e-2834.85Show/hide
Query:  LCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIH
        +C   A EP++   A         M +E+   +  +       P     IG KW++K K +   ++   KARLVA+GY Q EG+DF E+FS + +L ++ 
Subjt:  LCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIH

Query:  LLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFI----DPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTST
        L+L+IS    F L Q+D+ +AFLNG L EE+Y+  P G+     D      V  L K++YGLKQA R W+ +  + L   G+ +  +D T F+  T+T
Subjt:  LLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFI----DPEFSQYVYKLNKALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTST

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)4.0e-1239.39Show/hide
Query:  EPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSIS
        EP SV  AL D      MQEEL     N     V  P   NI+G KW+FK K     ++   KARLVA+G+ Q EG+ F E++S + R   I  +L+++
Subjt:  EPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHKPDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAAGGTGATTTGCAGCCATACAATGCTAAGACCAATTCAAACATAACTGATGAGGTCATAAACAATGAAAATGTGCTTGTCCCCTCTGCACATGTGAAAAAGAA
TCATCTTTCAAGTTCCATAATAGGCAATCTGTCAGCTGGAATCACTACCAGAAGAAAAGAAAAGGTAGATTACACGAAAATGATTGCTAATTTATGCTATGTGTCGGCAA
TAGAACCCACATCTGTTGAGAATGCTCTCAATGATGAATACGGGATAAATGTCATGCAAGAAGAGTTACTACAGTTTAAGTGTAACAACGTTTTGACTTTTGTTCATAAA
CCTGATGGGGCAAACATCATAGGAACTAAGTGGATTTTTAAAAATAAAACTGATGAATCTGAGAGTGTAATATGGAACAAGGCCCGCTTGGTGGCTCAAGGTTATGCACA
AGTAGAAGGTGTTGATTTTGATGAATCTTTTTCATCTATGGCTAGACTTGAAGCTATTCACCTTTTGCTCAGTATATCATGTTTCCGAAAATTTAAATTGTTTCAAATGG
ACGTTAAAAGTGCCTTTCTGAATGGATACTTATATGAGGAAGTCTATGTAGCACAACCTAAAGGGTTTATTGATCCTGAATTTTCTCAGTATGTCTACAAGCTTAATAAA
GCTCTATATGGGTTAAAGCAAGCTCCTCGGACTTGGTATGAACGACTAATAATGTATCTTGGTAAAAGAGGATATTCTAGGGGTGAGACTGACAAGACACTATTCATAAA
TAGAACCAGCACTGATCTCATCGTAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAAGGTGATTTGCAGCCATACAATGCTAAGACCAATTCAAACATAACTGATGAGGTCATAAACAATGAAAATGTGCTTGTCCCCTCTGCACATGTGAAAAAGAA
TCATCTTTCAAGTTCCATAATAGGCAATCTGTCAGCTGGAATCACTACCAGAAGAAAAGAAAAGGTAGATTACACGAAAATGATTGCTAATTTATGCTATGTGTCGGCAA
TAGAACCCACATCTGTTGAGAATGCTCTCAATGATGAATACGGGATAAATGTCATGCAAGAAGAGTTACTACAGTTTAAGTGTAACAACGTTTTGACTTTTGTTCATAAA
CCTGATGGGGCAAACATCATAGGAACTAAGTGGATTTTTAAAAATAAAACTGATGAATCTGAGAGTGTAATATGGAACAAGGCCCGCTTGGTGGCTCAAGGTTATGCACA
AGTAGAAGGTGTTGATTTTGATGAATCTTTTTCATCTATGGCTAGACTTGAAGCTATTCACCTTTTGCTCAGTATATCATGTTTCCGAAAATTTAAATTGTTTCAAATGG
ACGTTAAAAGTGCCTTTCTGAATGGATACTTATATGAGGAAGTCTATGTAGCACAACCTAAAGGGTTTATTGATCCTGAATTTTCTCAGTATGTCTACAAGCTTAATAAA
GCTCTATATGGGTTAAAGCAAGCTCCTCGGACTTGGTATGAACGACTAATAATGTATCTTGGTAAAAGAGGATATTCTAGGGGTGAGACTGACAAGACACTATTCATAAA
TAGAACCAGCACTGATCTCATCGTAGCTTAA
Protein sequenceShow/hide protein sequence
MLKGDLQPYNAKTNSNITDEVINNENVLVPSAHVKKNHLSSSIIGNLSAGITTRRKEKVDYTKMIANLCYVSAIEPTSVENALNDEYGINVMQEELLQFKCNNVLTFVHK
PDGANIIGTKWIFKNKTDESESVIWNKARLVAQGYAQVEGVDFDESFSSMARLEAIHLLLSISCFRKFKLFQMDVKSAFLNGYLYEEVYVAQPKGFIDPEFSQYVYKLNK
ALYGLKQAPRTWYERLIMYLGKRGYSRGETDKTLFINRTSTDLIVA