| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0046865.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] | 2.3e-58 | 68.75 | Show/hide |
Query: NLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------WLELLLGA-------------KQATV
N+N+KLQQNDG +MADAQRF+SLVGGLIYLTH RPDI YSI V SRFMQC SRDHF AAK W + + KQA V
Subjt: NLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------WLELLLGA-------------KQATV
Query: ALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYSTHSSGLIF
ALSSSEAEY AAT A CQAIWLRRMLTELQHEQEGA+VIF DNKA SMTKN TFHSRTKHIDI FHFI DLVAK EVSLSY STH GLIF
Subjt: ALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYSTHSSGLIF
|
|
| KAA0056051.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] | 3.7e-56 | 59.65 | Show/hide |
Query: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK-------------------------------WLELL---
+N+NEKLQQNDGA+MA+AQRF+SLVGGLIYLTH RPDI YSI V SRFMQ SRDHF AAK W L
Subjt: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK-------------------------------WLELL---
Query: -----------LGA------KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK
LG KQAT ALSSSEAEY AAT A CQAIWLRRMLTELQHEQEGA+VIFCDNKA ISMTKN TFHSRTKHIDIRFHFI DLVAK
Subjt: -----------LGA------KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK
Query: -EVSLSYYSTHSSGL-IFSQKLCQRRSC
EVSL+Y STH I ++ L + + C
Subjt: -EVSLSYYSTHSSGL-IFSQKLCQRRSC
|
|
| KAA0058958.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 1.5e-57 | 100 | Show/hide |
Query: LELLLGAKQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKEVSLSYYSTHSSG
LELLLGAKQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKEVSLSYYSTHSSG
Subjt: LELLLGAKQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKEVSLSYYSTHSSG
Query: LIFSQKLCQRRSCVTLEL
LIFSQKLCQRRSCVTLEL
Subjt: LIFSQKLCQRRSCVTLEL
|
|
| KAA0063731.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 5.4e-55 | 68.48 | Show/hide |
Query: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------W-----------LELLLGAKQATVA
MN+NEKLQQND AKM DAQRF+SLVGGLIYLTH PDI YSI V SRFMQC SRDHF AAK W ++ KQA VA
Subjt: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------W-----------LELLLGAKQATVA
Query: LSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYST
LSS EAEY A+T A CQ IWLRRMLTELQHEQEGA+VIFC+NKA ISMTKN TFHSRTKHIDI FHFI DLVAK EVSLSY ST
Subjt: LSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYST
|
|
| TYK03281.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] | 2.3e-58 | 68.75 | Show/hide |
Query: NLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------WLELLLGA-------------KQATV
N+N+KLQQNDG +MADAQRF+SLVGGLIYLTH RPDI YSI V SRFMQC SRDHF AAK W + + KQA V
Subjt: NLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------WLELLLGA-------------KQATV
Query: ALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYSTHSSGLIF
ALSSSEAEY AAT A CQAIWLRRMLTELQHEQEGA+VIF DNKA SMTKN TFHSRTKHIDI FHFI DLVAK EVSLSY STH GLIF
Subjt: ALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYSTHSSGLIF
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TZP7 Putative gag-pol polyprotein, identical | 1.1e-58 | 68.75 | Show/hide |
Query: NLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------WLELLLGA-------------KQATV
N+N+KLQQNDG +MADAQRF+SLVGGLIYLTH RPDI YSI V SRFMQC SRDHF AAK W + + KQA V
Subjt: NLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------WLELLLGA-------------KQATV
Query: ALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYSTHSSGLIF
ALSSSEAEY AAT A CQAIWLRRMLTELQHEQEGA+VIF DNKA SMTKN TFHSRTKHIDI FHFI DLVAK EVSLSY STH GLIF
Subjt: ALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYSTHSSGLIF
|
|
| A0A5A7URA0 Putative gag-pol polyprotein, identical | 1.8e-56 | 59.65 | Show/hide |
Query: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK-------------------------------WLELL---
+N+NEKLQQNDGA+MA+AQRF+SLVGGLIYLTH RPDI YSI V SRFMQ SRDHF AAK W L
Subjt: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK-------------------------------WLELL---
Query: -----------LGA------KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK
LG KQAT ALSSSEAEY AAT A CQAIWLRRMLTELQHEQEGA+VIFCDNKA ISMTKN TFHSRTKHIDIRFHFI DLVAK
Subjt: -----------LGA------KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK
Query: -EVSLSYYSTHSSGL-IFSQKLCQRRSC
EVSL+Y STH I ++ L + + C
Subjt: -EVSLSYYSTHSSGL-IFSQKLCQRRSC
|
|
| A0A5A7VDB5 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.6e-55 | 68.48 | Show/hide |
Query: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------W-----------LELLLGAKQATVA
MN+NEKLQQND AKM DAQRF+SLVGGLIYLTH PDI YSI V SRFMQC SRDHF AAK W ++ KQA VA
Subjt: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------W-----------LELLLGAKQATVA
Query: LSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYST
LSS EAEY A+T A CQ IWLRRMLTELQHEQEGA+VIFC+NKA ISMTKN TFHSRTKHIDI FHFI DLVAK EVSLSY ST
Subjt: LSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYST
|
|
| A0A5D3BU79 Putative gag-pol polyprotein, identical | 1.1e-58 | 68.75 | Show/hide |
Query: NLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------WLELLLGA-------------KQATV
N+N+KLQQNDG +MADAQRF+SLVGGLIYLTH RPDI YSI V SRFMQC SRDHF AAK W + + KQA V
Subjt: NLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK--------------WLELLLGA-------------KQATV
Query: ALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYSTHSSGLIF
ALSSSEAEY AAT A CQAIWLRRMLTELQHEQEGA+VIF DNKA SMTKN TFHSRTKHIDI FHFI DLVAK EVSLSY STH GLIF
Subjt: ALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAK-EVSLSYYSTHSSGLIF
|
|
| A0A5D3CI69 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 7.4e-58 | 100 | Show/hide |
Query: LELLLGAKQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKEVSLSYYSTHSSG
LELLLGAKQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKEVSLSYYSTHSSG
Subjt: LELLLGAKQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKEVSLSYYSTHSSG
Query: LIFSQKLCQRRSCVTLEL
LIFSQKLCQRRSCVTLEL
Subjt: LIFSQKLCQRRSCVTLEL
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 4.2e-10 | 40.22 | Show/hide |
Query: KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKEV-SLSYYSTHS
+Q +VA SS+EAEY A A +A+WL+ +LT + + E I+ DN+ IS+ N + H R KHIDI++HF + V V L Y T +
Subjt: KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKEV-SLSYYSTHS
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.1e-17 | 32.97 | Show/hide |
Query: FKSLVGGLIY-LTHARPDILYSIDVFSRFMQCSSRDHFEAAKW-LELLLGAK------------------------------------------------
+ S VG L+Y + RPDI +++ V SRF++ ++H+EA KW L L G
Subjt: FKSLVGGLIY-LTHARPDILYSIDVFSRFMQCSSRDHFEAAKW-LELLLGAK------------------------------------------------
Query: -QATVALSSSEAEYGAATLATCQAIWLRRMLTEL-QHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKE
Q VALS++EAEY AAT + IWL+R L EL H++E V++CD+++ I ++KN +H+RTKHID+R+H+I ++V E
Subjt: -QATVALSSSEAEYGAATLATCQAIWLRRMLTEL-QHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLVAKE
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.8e-14 | 28.64 | Show/hide |
Query: KLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK-WLELLLGA-----------------------------------
KL G K+ D ++ +VG L YL RPDI Y+++ S+FM + +H +A K L L G
Subjt: KLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK-WLELLLGA-----------------------------------
Query: ---------------KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLV-AKEVSL
KQ V SS+EAEY + + + W+ +LTEL VI+CDN + N FHSR KHI I +HFI + V + + +
Subjt: ---------------KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLV-AKEVSL
Query: SYYSTH
+ STH
Subjt: SYYSTH
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.3e-14 | 27.49 | Show/hide |
Query: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK-WLELLLGA------------------------------
M + KL + G K+ D ++ +VG L YL RPD+ Y+++ S++M + DH+ A K L L G
Subjt: MNLNEKLQQNDGAKMADAQRFKSLVGGLIYLTHARPDILYSIDVFSRFMQCSSRDHFEAAK-WLELLLGA------------------------------
Query: --------------------KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLV-A
KQ V SS+EAEY + + + W+ +LTEL + VI+CDN + N FHSR KHI + +HFI + V +
Subjt: --------------------KQATVALSSSEAEYGAATLATCQAIWLRRMLTELQHEQEGASVIFCDNKAMISMTKNLTFHSRTKHIDIRFHFIGDLV-A
Query: KEVSLSYYSTH
+ + + STH
Subjt: KEVSLSYYSTH
|
|
