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Cmc03g0064491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0064491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:5333794..5334141
RNA-Seq ExpressionCmc03g0064491
SyntenyCmc03g0064491
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036001.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-4888.29Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGLTN PAVFMD MNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+ V+PQKVEAVVNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TSATEVRS
Subjt:  ERLTSATEVRS
KAA0038417.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.7e-4990.09Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGLTN PAVFMDLMNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+SV+PQKVEAVVNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TSATEVRS
Subjt:  ERLTSATEVRS
KAA0053222.1 hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]1.4e-4889.19Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        M FGLTN PAVFMDLMNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+SV+PQKVEAVVNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TSATEVRS
Subjt:  ERLTSATEVRS
TYJ96975.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-4990.09Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGLTN PAVFMDLMNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+SV+PQKVEAVVNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TSATEVRS
Subjt:  ERLTSATEVRS
TYK22952.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-4886.49Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGLTN PA+FMDLMNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+SV+PQKVE +VNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TS TEVRS
Subjt:  ERLTSATEVRS
TrEMBL top hitse value%identityAlignment
A0A5A7T306 DNA/RNA polymerases superfamily protein6.8e-4988.29Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGLTN PAVFMD MNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+ V+PQKVEAVVNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TSATEVRS
Subjt:  ERLTSATEVRS
A0A5A7TA17 Putative gag-pol polyprotein8.0e-5090.09Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGLTN PAVFMDLMNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+SV+PQKVEAVVNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TSATEVRS
Subjt:  ERLTSATEVRS
A0A5A7UBV9 Uncharacterized protein6.8e-4989.19Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        M FGLTN PAVFMDLMNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+SV+PQKVEAVVNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TSATEVRS
Subjt:  ERLTSATEVRS
A0A5D3BEU1 DNA/RNA polymerases superfamily protein8.0e-5090.09Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGLTN PAVFMDLMNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+SV+PQKVEAVVNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TSATEVRS
Subjt:  ERLTSATEVRS
A0A5D3DHC6 Reverse transcriptase1.2e-4886.49Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGLTN PA+FMDLMNRIFHQYLDQFVIVFIDDILVY VDRE+HEEHLRI+LQTL DKQLYAKFSKCEFWL+QVVFLGHV+S KG+SV+PQKVE +VNW
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
        ER TS TEVRS
Subjt:  ERLTSATEVRS
SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-1535.14Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGL N PA F   MN I    L++  +V++DDI+V+    + H + L ++ + L    L  +  KCEF   +  FLGHV++  G+  NP+K+EA+  +
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
           T   E+++
Subjt:  ERLTSATEVRS
P0CT34 Transposon Tf2-1 polyprotein3.4e-1332.73Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MP+G++  PA F   +N I  +  +  V+ ++DDIL++      H +H++ +LQ L +  L    +KCEF   QV F+G+ ISEKG +   + ++ V+ W
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVR
        ++  +  E+R
Subjt:  ERLTSATEVR
P0CT41 Transposon Tf2-12 polyprotein3.4e-1332.73Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MP+G++  PA F   +N I  +  +  V+ ++DDIL++      H +H++ +LQ L +  L    +KCEF   QV F+G+ ISEKG +   + ++ V+ W
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVR
        ++  +  E+R
Subjt:  ERLTSATEVR
P20825 Retrovirus-related Pol polyprotein from transposon 2972.1e-1535.14Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        MPFGL N PA F   MN I    L++  +V++DDI+++      H   ++++   L D  L  +  KCEF   +  FLGH+++  G+  NP KV+A+V++
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVRS
           T   E+R+
Subjt:  ERLTSATEVRS
Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.8e-1433.64Show/hide
Query:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW
        +PFGL N PA+F  +++ I  +++ +   V+IDDI+V+  D + H ++LR++L +L    L     K  F   QV FLG++++  G+  +P+KV A+   
Subjt:  MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNW

Query:  ERLTSATEVR
           TS  E++
Subjt:  ERLTSATEVR
Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.6e-0841.54Show/hide
Query:  HLRIILQTLHDKQLYAKFSKCEFWLDQVVFLG--HVISEKGLSVNPQKVEAVVNWERLTSATEVR
        HL ++LQ     Q YA   KC F   Q+ +LG  H+IS +G+S +P K+EA+V W    + TE+R
Subjt:  HLRIILQTLHDKQLYAKFSKCEFWLDQVVFLG--HVISEKGLSVNPQKVEAVVNWERLTSATEVR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCGGTTTAACGAATAGGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAATATTTAGATCAGTTTGTGATCGTGTTCATTGATGATATACTAGT
TTACTTGGTTGATAGGGAAGCCCATGAGGAACATCTAAGGATTATTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTTAGCAAATGTGAGTTCTGGTTGGACC
AAGTAGTATTCTTGGGGCATGTAATTTCAGAAAAAGGACTTAGTGTCAATCCACAAAAAGTGGAAGCAGTTGTAAATTGGGAAAGACTAACCAGTGCGACAGAAGTACGT
AGTTCCTACGTTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCGGTTTAACGAATAGGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAATATTTAGATCAGTTTGTGATCGTGTTCATTGATGATATACTAGT
TTACTTGGTTGATAGGGAAGCCCATGAGGAACATCTAAGGATTATTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTTAGCAAATGTGAGTTCTGGTTGGACC
AAGTAGTATTCTTGGGGCATGTAATTTCAGAAAAAGGACTTAGTGTCAATCCACAAAAAGTGGAAGCAGTTGTAAATTGGGAAAGACTAACCAGTGCGACAGAAGTACGT
AGTTCCTACGTTTGGTAG
Protein sequenceShow/hide protein sequence
MPFGLTNRPAVFMDLMNRIFHQYLDQFVIVFIDDILVYLVDREAHEEHLRIILQTLHDKQLYAKFSKCEFWLDQVVFLGHVISEKGLSVNPQKVEAVVNWERLTSATEVR
SSYVW