; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0064521 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0064521
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:5449920..5450896
RNA-Seq ExpressionCmc03g0064521
SyntenyCmc03g0064521
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058942.1 pol protein [Cucumis melo var. makuwa]8.3e-173100Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLY
        RHYLY
Subjt:  RHYLY

KAA0063946.1 pol protein [Cucumis melo var. makuwa]7.0e-16494.43Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFS IDL+SGYHQLRIRDSDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHL QVLETLRAN+LYAKFSKCEF L+KV+FLGHV+SSEGVS+DP KIEAVTNWPRPS VSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
         ASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVP+GSGSFVIYSDASKKGLGC+LMQQG+VVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLY
        R YLY
Subjt:  RHYLY

TYK01306.1 pol protein [Cucumis melo var. makuwa]5.4e-16493.79Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFS IDL+SGYHQLRIRDSDIPKTAFR RYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHL QVLETLRAN+LYAKFSKCEF L+KV+FLGHV+SSEGVS+DP KIEAVTNWPRPS VSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        IASPLTQLTR+GTPFVWSP CESSFQ+LKQKLVTAPVLTVP+GSGSFVIYSDASKKGLGC+LMQQG+VVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLYE
        RHYLY+
Subjt:  RHYLYE

TYK05193.1 pol protein [Cucumis melo var. makuwa]1.9e-16494.43Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFS IDL+SGYHQLRIRD DIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHL QVLETLRAN+LYAKFSKCEF L+KV+FLGHV+SSEGVS+DPTKIEAVTNWPRPS VSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVP+GSG+FVIYSDASKKGLGC+LMQQG+VVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLY
        R YLY
Subjt:  RHYLY

TYK18480.1 pol protein [Cucumis melo var. makuwa]1.9e-16495.08Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFS IDL+SGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHL QVLETLRAN+LYAKFSKCEF L+KV+FLGHV+SSEGVS+DPTKIEAVTNWPRPS VSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVP+GSGSFVIYSDA KKGLGC+LMQQG+VVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLY
        RHYLY
Subjt:  RHYLY

TrEMBL top hitse value%identityAlignment
A0A5A7USS4 Pol protein4.0e-173100Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLY
        RHYLY
Subjt:  RHYLY

A0A5A7VBY3 Reverse transcriptase3.4e-16494.43Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFS IDL+SGYHQLRIRDSDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHL QVLETLRAN+LYAKFSKCEF L+KV+FLGHV+SSEGVS+DP KIEAVTNWPRPS VSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
         ASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVP+GSGSFVIYSDASKKGLGC+LMQQG+VVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLY
        R YLY
Subjt:  RHYLY

A0A5D3BSV9 Reverse transcriptase2.6e-16493.79Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFS IDL+SGYHQLRIRDSDIPKTAFR RYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHL QVLETLRAN+LYAKFSKCEF L+KV+FLGHV+SSEGVS+DP KIEAVTNWPRPS VSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        IASPLTQLTR+GTPFVWSP CESSFQ+LKQKLVTAPVLTVP+GSGSFVIYSDASKKGLGC+LMQQG+VVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLYE
        RHYLY+
Subjt:  RHYLYE

A0A5D3BZN1 Reverse transcriptase9.0e-16594.43Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFS IDL+SGYHQLRIRD DIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHL QVLETLRAN+LYAKFSKCEF L+KV+FLGHV+SSEGVS+DPTKIEAVTNWPRPS VSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVP+GSG+FVIYSDASKKGLGC+LMQQG+VVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLY
        R YLY
Subjt:  RHYLY

A0A5D3D4M7 Pol protein9.0e-16595.08Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        MRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFS IDL+SGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        IVFIDDILIYSKTEAEHEEHL QVLETLRAN+LYAKFSKCEF L+KV+FLGHV+SSEGVS+DPTKIEAVTNWPRPS VSEIRSFLGLAGYYRRFVEDFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVP+GSGSFVIYSDA KKGLGC+LMQQG+VVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYLY
        RHYLY
Subjt:  RHYLY

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.0e-7041.12Show/hide
Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI
        R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    + KTAF +++GHYE++ M FGL NAPA F   MN + +  L+   +
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI

Query:  VFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRI
        V++DDI+++S +  EH + L  V E L    L  +  KCEFL ++ +FLGHV++ +G+  +P KIEA+  +P P+   EI++FLGL GYYR+F+ +F+ I
Subjt:  VFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRI

Query:  ASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        A P+T+  +K       +P  +S+F++LK  +   P+L VP+ +  F + +DAS   LG +L Q G  ++Y SR L  HE NY T + EL A+V+A K +
Subjt:  ASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYL
        RHYL
Subjt:  RHYL

P0CT34 Transposon Tf2-1 polyprotein2.2e-5936.89Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+ +DL+S YH +R+R  D  K AFR   G +E++VM +G++ APA F   +N +  +  +S V
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        + ++DDILI+SK+E+EH +H++ VL+ L+   L    +KCEF   +V F+G+ +S +G +     I+ V  W +P N  E+R FLG   Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQG-----RVVAYASRQLKSHEQNYPTHDLELAAVVF
        +  PL  L +K   + W+P    + + +KQ LV+ PVL   + S   ++ +DAS   +G +L Q+        V Y S ++   + NY   D E+ A++ 
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQG-----RVVAYASRQLKSHEQNYPTHDLELAAVVF

Query:  ALKIWRHYL
        +LK WRHYL
Subjt:  ALKIWRHYL

P0CT41 Transposon Tf2-12 polyprotein2.2e-5936.89Show/hide
Query:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV
        +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+ +DL+S YH +R+R  D  K AFR   G +E++VM +G++ APA F   +N +  +  +S V
Subjt:  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFV

Query:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR
        + ++DDILI+SK+E+EH +H++ VL+ L+   L    +KCEF   +V F+G+ +S +G +     I+ V  W +P N  E+R FLG   Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSR

Query:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQG-----RVVAYASRQLKSHEQNYPTHDLELAAVVF
        +  PL  L +K   + W+P    + + +KQ LV+ PVL   + S   ++ +DAS   +G +L Q+        V Y S ++   + NY   D E+ A++ 
Subjt:  IASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQG-----RVVAYASRQLKSHEQNYPTHDLELAAVVF

Query:  ALKIWRHYL
        +LK WRHYL
Subjt:  ALKIWRHYL

P20825 Retrovirus-related Pol polyprotein from transposon 2979.8e-6839.47Show/hide
Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI
        R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  I KTAF ++ GHYE++ M FGL NAPA F   MN + +  L+   +
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI

Query:  VFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRI
        V++DDI+I+S +  EH   ++ V   L    L  +  KCEFL K+ +FLGH+++ +G+  +P K++A+ ++P P+   EIR+FLGL GYYR+F+ +++ I
Subjt:  VFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRI

Query:  ASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
        A P+T   +K T           +F++LK  ++  P+L +P+    FV+ +DAS   LG +L Q G  +++ SR L  HE NY   + EL A+V+A K +
Subjt:  ASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW

Query:  RHYL
        RHYL
Subjt:  RHYL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-6036.05Show/hide
Query:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI
        R+ +D++ LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +++SDIPKTAF +  G YEF+ + FGL NAPA+F  +++ + ++ +     
Subjt:  RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVI

Query:  VFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRI
        V+IDDI+++S+    H ++LR VL +L    L     K  FL  +V FLG++++++G+  DP K+ A++  P P++V E++ FLG+  YYR+F++D++++
Subjt:  VFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRI

Query:  ASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQ----QGRVVAYASRQLKSHEQNYPTH
        A PLT LTR              P         SF +LK  L ++ +L  P  +  F + +DAS   +G +L Q    + R +AY SR L   E+NY T 
Subjt:  ASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQ----QGRVVAYASRQLKSHEQNYPTH

Query:  DLELAAVVFALKIWRHYLY
        + E+ A++++L   R YLY
Subjt:  DLELAAVVFALKIWRHYLY

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.3e-2642.75Show/hide
Query:  HLRQVLETLRANRLYAKFSKCEFLLKKVSFLG--HVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW
        HL  VL+    ++ YA   KC F   ++++LG  H++S EGVS DP K+EA+  WP P N +E+R FLGL GYYRRFV+++ +I  PLT+L +K +   W
Subjt:  HLRQVLETLRANRLYAKFSKCEFLLKKVSFLG--HVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW

Query:  SPACESSFQELKQKLVTAPVLTVPNGSGSFV
        +     +F+ LK  + T PVL +P+    FV
Subjt:  SPACESSFQELKQKLVTAPVLTVPNGSGSFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACTGTTAAGAATCGCTATCCCTTGCCCAGGATTGATGACTTATTCGACCAGTTGCAGGGAGCCACCGTCTT
TTCTAACATCGACCTGCAATCAGGTTATCACCAGTTGAGGATCAGGGACAGTGACATTCCTAAGACGGCTTTTCGTTCGAGATACGGACATTACGAGTTCATTGTGATGT
CTTTTGGTTTGACTAATGCCCCTGCGGTGTTCATGGATTTAATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTTTTCATTGACGATATCTTAATTTAC
TCCAAGACAGAGGCTGAGCATGAGGAGCATTTACGCCAAGTTTTGGAGACTCTTCGAGCCAATAGACTGTATGCCAAGTTCTCCAAGTGCGAGTTCTTGCTGAAGAAGGT
ATCTTTCCTTGGACATGTGATGTCCAGTGAGGGAGTTTCTATGGACCCAACAAAGATCGAAGCGGTTACCAATTGGCCTCGACCGTCTAATGTTAGCGAGATTCGTAGTT
TCCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATCGCCAGCCCCTTGACCCAGTTGACCAGAAAGGGAACCCCTTTTGTTTGGAGCCCAGCT
TGCGAGAGTAGCTTCCAAGAGCTTAAGCAGAAGCTAGTGACTGCACCAGTTCTGACAGTGCCCAATGGGTCGGGAAGCTTTGTGATCTATAGTGATGCCTCGAAGAAGGG
ACTGGGTTGCATGCTGATGCAGCAGGGCAGGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACGACTTGGAGTTGGCAGCAGTGG
TCTTCGCACTGAAGATATGGAGGCACTACCTATATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACTGTTAAGAATCGCTATCCCTTGCCCAGGATTGATGACTTATTCGACCAGTTGCAGGGAGCCACCGTCTT
TTCTAACATCGACCTGCAATCAGGTTATCACCAGTTGAGGATCAGGGACAGTGACATTCCTAAGACGGCTTTTCGTTCGAGATACGGACATTACGAGTTCATTGTGATGT
CTTTTGGTTTGACTAATGCCCCTGCGGTGTTCATGGATTTAATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTTTTCATTGACGATATCTTAATTTAC
TCCAAGACAGAGGCTGAGCATGAGGAGCATTTACGCCAAGTTTTGGAGACTCTTCGAGCCAATAGACTGTATGCCAAGTTCTCCAAGTGCGAGTTCTTGCTGAAGAAGGT
ATCTTTCCTTGGACATGTGATGTCCAGTGAGGGAGTTTCTATGGACCCAACAAAGATCGAAGCGGTTACCAATTGGCCTCGACCGTCTAATGTTAGCGAGATTCGTAGTT
TCCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATCGCCAGCCCCTTGACCCAGTTGACCAGAAAGGGAACCCCTTTTGTTTGGAGCCCAGCT
TGCGAGAGTAGCTTCCAAGAGCTTAAGCAGAAGCTAGTGACTGCACCAGTTCTGACAGTGCCCAATGGGTCGGGAAGCTTTGTGATCTATAGTGATGCCTCGAAGAAGGG
ACTGGGTTGCATGCTGATGCAGCAGGGCAGGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACGACTTGGAGTTGGCAGCAGTGG
TCTTCGCACTGAAGATATGGAGGCACTACCTATATGAATGA
Protein sequenceShow/hide protein sequence
MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSNIDLQSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIY
SKTEAEHEEHLRQVLETLRANRLYAKFSKCEFLLKKVSFLGHVMSSEGVSMDPTKIEAVTNWPRPSNVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA
CESSFQELKQKLVTAPVLTVPNGSGSFVIYSDASKKGLGCMLMQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYE