CuGenDBv2

Gene ID	Cmc03g0064951
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr03:6183861..6184355
RNA-Seq Expression	Cmc03g0064951
Synteny	Cmc03g0064951
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040427.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.8e-64

84.46

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Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND   N VG  DVHLKNRNGSRLILKN KHIPDI MNL STGKLDDE FCNTFDNGIWKLTKGSMVI  GQK  SLYYMDAKI+D DINTVNDEANVE
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LWH+RLSHMSEKGLKILTKKNHL  LKS PLKRC HCL  KQTRVTFK
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK

KAA0047570.1 putative retrotransposon [Cucumis melo var. makuwa]

1.9e-59

77.36

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Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND SAN VG  DVHL NRNGSRLILKN KHI DIRMNL STGKLDDE FCNTFDNGIWKLTKGS+VI +G K  SLYYMDAKI+DSDINTVNDE N+E
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKK-----------NHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LWH+RLSHMSEKGLKILTKK           NHL  LKS PLKRC HCL  KQTRVTFK
Subjt:  LWHERLSHMSEKGLKILTKK-----------NHLSGLKSAPLKRCLHCLPVKQTRVTFK

KAA0065636.1 putative retrotransposon [Cucumis melo var. makuwa]

9.9e-56

79.05

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Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND S NAVG   VHLKN NGSRLILKN KHIPDIRMNL ST KLD+E FCNTFDNGIWKLT+G MVI KGQKI  LYY+DAKI+DSDINTVN EANVE
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LW  RLSHMSEKGLKIL KKNHL  LKSAPLK   H L  KQT VTFK
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK

RVW24680.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.6e-48

64.52

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Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND SA A+G  DV L+  NG+ L LKN KHIPDIRMNL STGKLDDE FCNTF +  WKLT+GSMVI KG K  SLY M A+++DS IN V+D++  E
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFKIILAFKK
        LWH RL HMSEKGL IL KKN LSG+K   LKRC HCL  KQTRV FK +   +K
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFKIILAFKK

TYJ98688.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.8e-64

84.46

Show/hide

Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND   N VG  DVHLKNRNGSRLILKN KHIPDI MNL STGKLDDE FCNTFDNGIWKLTKGSMVI  GQK  SLYYMDAKI+D DINTVNDEANVE
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LWH+RLSHMSEKGLKILTKKNHL  LKS PLKRC HCL  KQTRVTFK
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK

TrEMBL top hits

e value

%identity

Alignment

A0A438HUT4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-48

64.52

Show/hide

Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND SA A+G  DV L+  NG+ L LKN KHIPDIRMNL STGKLDDE FCNTF +  WKLT+GSMVI KG K  SLY M A+++DS IN V+D++  E
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFKIILAFKK
        LWH RL HMSEKGL IL KKN LSG+K   LKRC HCL  KQTRV FK +   +K
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFKIILAFKK

A0A5A7TFU1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-64

84.46

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Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND   N VG  DVHLKNRNGSRLILKN KHIPDI MNL STGKLDDE FCNTFDNGIWKLTKGSMVI  GQK  SLYYMDAKI+D DINTVNDEANVE
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LWH+RLSHMSEKGLKILTKKNHL  LKS PLKRC HCL  KQTRVTFK
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK

A0A5D3BKF7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-64

84.46

Show/hide

Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND   N VG  DVHLKNRNGSRLILKN KHIPDI MNL STGKLDDE FCNTFDNGIWKLTKGSMVI  GQK  SLYYMDAKI+D DINTVNDEANVE
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LWH+RLSHMSEKGLKILTKKNHL  LKS PLKRC HCL  KQTRVTFK
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK

A0A5D3C706 Putative retrotransposon

4.8e-56

79.05

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Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND S NAVG   VHLKN NGSRLILKN KHIPDIRMNL ST KLD+E FCNTFDNGIWKLT+G MVI KGQKI  LYY+DAKI+DSDINTVN EANVE
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LW  RLSHMSEKGLKIL KKNHL  LKSAPLK   H L  KQT VTFK
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK

A0A5D3CVK2 Putative retrotransposon

9.3e-60

77.36

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Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGND SAN VG  DVHL NRNGSRLILKN KHI DIRMNL STGKLDDE FCNTFDNGIWKLTKGS+VI +G K  SLYYMDAKI+DSDINTVNDE N+E
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKK-----------NHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LWH+RLSHMSEKGLKILTKK           NHL  LKS PLKRC HCL  KQTRVTFK
Subjt:  LWHERLSHMSEKGLKILTKK-----------NHLSGLKSAPLKRCLHCLPVKQTRVTFK

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-29

44.59

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Query:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE
        MGN   +   G  D+ +K   G  L+LK+ +H+PD+RMNL S   LD + + + F N  W+LTKGS+VI KG    +LY  +A+I   ++N   DE +V+
Subjt:  MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVE

Query:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK
        LWH+R+ HMSEKGL+IL KK+ +S  K   +K C +CL  KQ RV+F+
Subjt:  LWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFK

P93293 Uncharacterized mitochondrial protein AtMg00300

6.5e-10

38.71

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Query:  GIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDIN---TVNDEANVELWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTF
        G+ K+ KG   I+KG +  SLY +   +   + N   T  DE    LWH RL+HMS++G+++L KK  L   K + LK C  C+  K  RV F
Subjt:  GIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDIN---TVNDEANVELWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTF

Arabidopsis top hits

e value

%identity

Alignment

ATMG00300.1 Gag-Pol-related retrotransposon family protein

4.6e-11

38.71

Show/hide

Query:  GIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDIN---TVNDEANVELWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTF
        G+ K+ KG   I+KG +  SLY +   +   + N   T  DE    LWH RL+HMS++G+++L KK  L   K + LK C  C+  K  RV F
Subjt:  GIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDIN---TVNDEANVELWHERLSHMSEKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTF

Sequences

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CDS sequence

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ATGGGCAATGACAAATCAGCAAATGCAGTTGGCACCGAAGATGTACACTTGAAGAACAGAAATGGTTCTAGGCTGATTTTGAAAAATTTTAAACATATTCCCGACATTCG
TATGAACTTGTTCTCTACAGGTAAGCTTGATGATGAATGTTTCTGTAATACCTTCGATAATGGCATATGGAAGCTTACTAAAGGTTCTATGGTTATAGTAAAAGGACAAA
AAATTTTATCACTGTACTACATGGATGCTAAAATCATGGATTCTGATATAAATACAGTAAATGATGAAGCGAATGTTGAGCTTTGGCATGAAAGACTTAGTCATATGAGT
GAGAAAGGTTTAAAGATTTTAACCAAGAAAAATCATCTTTCTGGTTTAAAGAGTGCACCTCTAAAACGGTGTCTTCATTGTTTGCCGGTAAAGCAAACGAGGGTTACCTT
TAAAATCATCTTAGCATTCAAGAAAGCCAAATGTACTAGAGTTGGTAAATTCTGA

mRNA sequence

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Protein sequence

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MGNDKSANAVGTEDVHLKNRNGSRLILKNFKHIPDIRMNLFSTGKLDDECFCNTFDNGIWKLTKGSMVIVKGQKILSLYYMDAKIMDSDINTVNDEANVELWHERLSHMS
EKGLKILTKKNHLSGLKSAPLKRCLHCLPVKQTRVTFKIILAFKKAKCTRVGKF

Cmc03g0064951 (gene) of Melon (Charmono) v1.1 genome