CuGenDBv2

Gene ID	Cmc03g0065341
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr03:6647863..6649536
RNA-Seq Expression	Cmc03g0065341
Synteny	Cmc03g0065341
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR041588 - Integrase zinc-binding domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR000477 - Reverse transcriptase domain IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040695.1 pol protein [Cucumis melo var. makuwa]

2.0e-305

93.9

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHEEHLR+VLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
         RPSTVSEVRSFLGLAGY R+FVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL V DGSGSF+IYSDASKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ  EFS+SSDGGLLFER +CVP DSAVK ELLSEAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMYQ+LKRVYWW NM+REVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIT LPRTLRGFTVIWVVVDRLTK AHF+PGKSTYTA
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVS+RDARFTSKFWKGLQT MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

8.0e-307

94.43

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHEEHLR+VLQTL DNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
        TRPSTVSEVRSFLGLAGY RRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL VPDGSGSF+IYSDASKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ VEFS+SSDGGLLFERR+CVP DS VK ELLSEAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMY+++KRVYWWRNM+REVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIT LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYTA
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQT MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

KAA0057672.1 pol protein [Cucumis melo var. makuwa]

2.3e-306

94.08

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Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHEEHLR+VLQTL DNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
        TRPSTVSEVRSFLGLAGY RRFVENFSR ATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL VPDGSGSF+IYSDASKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ VEFS+SSDGGLLFERR+CVP DSAVK ELL+EAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMYQ+LKR+YWWRNM+REVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI  LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYT 
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQT MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

KAA0062112.1 pol protein [Cucumis melo var. makuwa]

4.2e-308

94.79

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Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHE HLR+VLQTL DNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
        TRPSTVSEVRSFLGLAGY RRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL VPDGSGSF+IYSD SKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ VEFS+SSDGGLLFERR+CVP DSAVK ELLSEAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMYQ+LKRVYWWRNM+REVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIT LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYT+
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

TYK01613.1 pol protein [Cucumis melo var. makuwa]

2.7e-307

94.61

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHEEHLR+VLQTL DNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
        TRPSTVSEVRSFLGLAGY RRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVL VPDGSGSF+IYSDASKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ  EFS+SSDGGLLFERR+CVP DSAVK ELLSEAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMYQ+LKRVYWWRNM+REVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIT LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYTA
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQT MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGX4 Reverse transcriptase

9.5e-306

93.9

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHEEHLR+VLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
         RPSTVSEVRSFLGLAGY R+FVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL V DGSGSF+IYSDASKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ  EFS+SSDGGLLFER +CVP DSAVK ELLSEAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMYQ+LKRVYWW NM+REVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIT LPRTLRGFTVIWVVVDRLTK AHF+PGKSTYTA
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVS+RDARFTSKFWKGLQT MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

A0A5A7U330 Reverse transcriptase

3.9e-307

94.43

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHEEHLR+VLQTL DNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
        TRPSTVSEVRSFLGLAGY RRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL VPDGSGSF+IYSDASKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ VEFS+SSDGGLLFERR+CVP DS VK ELLSEAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMY+++KRVYWWRNM+REVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIT LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYTA
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQT MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

A0A5A7UP94 Pol protein

1.1e-306

94.08

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHEEHLR+VLQTL DNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
        TRPSTVSEVRSFLGLAGY RRFVENFSR ATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL VPDGSGSF+IYSDASKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ VEFS+SSDGGLLFERR+CVP DSAVK ELL+EAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMYQ+LKR+YWWRNM+REVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFI  LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYT 
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQT MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

A0A5A7V1N3 Reverse transcriptase

2.1e-308

94.79

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHE HLR+VLQTL DNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
        TRPSTVSEVRSFLGLAGY RRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL VPDGSGSF+IYSD SKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ VEFS+SSDGGLLFERR+CVP DSAVK ELLSEAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMYQ+LKRVYWWRNM+REVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIT LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYT+
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

A0A5D3BPI1 Reverse transcriptase

1.3e-307

94.61

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        MSF LTNAPAVFMDLMNRVFREFLDTF IVFIDDILIYSK EAEHEEHLR+VLQTL DNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGW
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA
        TRPSTVSEVRSFLGLAGY RRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVL VPDGSGSF+IYSDASKKGLGCVLMQQGKV AYA
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE+IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH
        QAPLHRDLERAEIAVSVGAVT+QL QLTVQPTL+QRIIDA+SNDPYLVE RGLAEAGQ  EFS+SSDGGLLFERR+CVP DSAVK ELLSEAHSSPFSMH
Subjt:  QAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMH

Query:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA
        PGSTKMYQ+LKRVYWWRNM+REVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIT LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYTA
Subjt:  PGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTA

Query:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
        SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQT MGTRLDFSTAFHPQT G
Subjt:  SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.3e-81

32.22

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        M + ++ APA F   +N +  E  ++  + ++DDILI+SK E+EH +H++ VLQ L +  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---
         +P    E+R FLG   Y+R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   L+ +DAS   +G VL Q+   +   
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---

Query:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
           Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL
             ++    P+ +D E   I          + Q+++    K +++   +ND  L+    L    + VE +I    GLL   +  + +P D+ +   ++
Subjt:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL

Query:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA
         + H     +HPG   +   + R + W+ + +++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A
Subjt:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA

Query:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
          +P   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT G
Subjt:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

P0CT35 Transposon Tf2-2 polyprotein

1.3e-81

32.22

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        M + ++ APA F   +N +  E  ++  + ++DDILI+SK E+EH +H++ VLQ L +  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---
         +P    E+R FLG   Y+R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   L+ +DAS   +G VL Q+   +   
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---

Query:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
           Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL
             ++    P+ +D E   I          + Q+++    K +++   +ND  L+    L    + VE +I    GLL   +  + +P D+ +   ++
Subjt:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL

Query:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA
         + H     +HPG   +   + R + W+ + +++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A
Subjt:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA

Query:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
          +P   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT G
Subjt:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

P0CT36 Transposon Tf2-3 polyprotein

1.3e-81

32.22

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        M + ++ APA F   +N +  E  ++  + ++DDILI+SK E+EH +H++ VLQ L +  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---
         +P    E+R FLG   Y+R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   L+ +DAS   +G VL Q+   +   
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---

Query:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
           Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL
             ++    P+ +D E   I          + Q+++    K +++   +ND  L+    L    + VE +I    GLL   +  + +P D+ +   ++
Subjt:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL

Query:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA
         + H     +HPG   +   + R + W+ + +++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A
Subjt:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA

Query:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
          +P   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT G
Subjt:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

P0CT37 Transposon Tf2-4 polyprotein

1.3e-81

32.22

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        M + ++ APA F   +N +  E  ++  + ++DDILI+SK E+EH +H++ VLQ L +  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---
         +P    E+R FLG   Y+R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   L+ +DAS   +G VL Q+   +   
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---

Query:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
           Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL
             ++    P+ +D E   I          + Q+++    K +++   +ND  L+    L    + VE +I    GLL   +  + +P D+ +   ++
Subjt:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL

Query:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA
         + H     +HPG   +   + R + W+ + +++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A
Subjt:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA

Query:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
          +P   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT G
Subjt:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

P0CT41 Transposon Tf2-12 polyprotein

1.3e-81

32.22

Show/hide

Query:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW
        M + ++ APA F   +N +  E  ++  + ++DDILI+SK E+EH +H++ VLQ L +  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGW

Query:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---
         +P    E+R FLG   Y+R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   L+ +DAS   +G VL Q+   +   
Subjt:  TRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVE---

Query:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
           Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  --AYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--ERIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL
             ++    P+ +D E   I          + Q+++    K +++   +ND  L+    L    + VE +I    GLL   +  + +P D+ +   ++
Subjt:  SHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQPTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERR--VCVPLDSAVKIELL

Query:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA
         + H     +HPG   +   + R + W+ + +++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A
Subjt:  SEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSA

Query:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG
          +P   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT G
Subjt:  HFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTGG

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.0e-25

44.8

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Query:  HLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLG--HVVSKTGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVW
        HL +VLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW  P   +E+R FLGL GY RRFV+N+ +I  PLT+L +K +   W
Subjt:  HLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLG--HVVSKTGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKLVTAPVLIVPD
        ++    +F+ LK  + T PVL +PD
Subjt:  SKACEDSFQNLKQKLVTAPVLIVPD

Sequences

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CDS sequence

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ATGTCTTTTTGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGCGATCGTGTTTATTGATGATATCTTGAT
ATACTCCAAGATGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACGCTTTGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGC
AGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGACTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGT
AGCTTTCTGGGTTTAGCAGGTTATATTCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAA
GGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTATTGTACCTGATGGTTCTGGCAGTTTTTTGATTTATAGTGATGCTTCCAAGA
AGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTGGAAGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCA
GTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAGGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATAT
GAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATT
CCGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGAGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATACAGTTACCCCAGTTGACGGTACAG
CCGACTTTGAAGCAAAGGATCATTGATGCTCGGAGTAACGATCCTTATTTGGTTGAGAATCGTGGCCTAGCAGAGGCAGGGCAAGTGGTTGAGTTCTCCATATCCTCTGA
TGGTGGACTTTTGTTTGAGAGACGTGTCTGTGTGCCATTAGATAGTGCGGTTAAAATAGAATTATTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCAGGTAGTA
CGAAGATGTATCAGAACCTGAAGCGGGTTTATTGGTGGCGTAACATGGAGAGGGAGGTAGCAGAGTTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGG
CAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCGATGGATTTCATTACAAGACTGCCGAGAACTCTGAGGGGTTTTACAGT
GATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTTCTTCCGGGTAAATCCACTTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGAT
TACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTACTATGGGCACGAGGTTAGACTTTAGTACAGCT
TTCCATCCACAGACTGGCGGTTAG

mRNA sequence

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Protein sequence

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MSFCLTNAPAVFMDLMNRVFREFLDTFAIVFIDDILIYSKMEAEHEEHLRIVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGWTRPSTVSEVR
SFLGLAGYIRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFLIYSDASKKGLGCVLMQQGKVEAYASRQLKSHEQNYPTHDLELAA
VVFALKIWRHYLYGERIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTIQLPQLTVQ
PTLKQRIIDARSNDPYLVENRGLAEAGQVVEFSISSDGGLLFERRVCVPLDSAVKIELLSEAHSSPFSMHPGSTKMYQNLKRVYWWRNMEREVAEFVSRCLVCQQVKAPR
QKPAGLLQPLSIPEWKWENVSMDFITRLPRTLRGFTVIWVVVDRLTKSAHFLPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTA
FHPQTGG

Cmc03g0065341 (gene) of Melon (Charmono) v1.1 genome