CuGenDBv2

Gene ID	Cmc03g0065671
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr03:7150194..7151263
RNA-Seq Expression	Cmc03g0065671
Synteny	Cmc03g0065671
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041588 - Integrase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025425.1 pol protein [Cucumis melo var. makuwa]

1.9e-189

97.31

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGM PFEALYGKCCRSPVCWGEVG QRLMG ELVQSTNEAIQKIRSRMHTAQSRQ SYADVRR DLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

KAA0047043.1 pol protein [Cucumis melo var. makuwa]

6.4e-190

97.6

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGM PFEALYGKCCRSPVCWGEVG QRLMGPELVQS NEAIQKIRSRMHTAQSRQ SYADVRR DLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

2.2e-190

97.01

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGM PFEALYG+CCRSPVCWGEVG QRLMGPELVQSTNEAIQKIRSRMHTAQSRQ SYADVRRKDLEFE+GDKVFLKVAPM+GVLRF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

2.2e-190

97.01

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGMTPFEALYG+CCRSPVCWGEVG QRLMGPELVQSTNEAIQKIRSRMHTAQSRQ SYADVRRKDLEFE+GDKVFLKVAPM+GVLRF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLS VHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

4.9e-190

97.01

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTK+YQDLKRVYWWRNMKREVAEFVS+CLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGM PFEALYG+CCRSPVCWGEVG QRLMGPELVQSTNEAIQKIRSRMHTAQSRQ SYADVRRKDLEFEVGDKVFLKVAPMRGV+RF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT0 Pol protein

9.0e-190

97.31

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGM PFEALYGKCCRSPVCWGEVG QRLMG ELVQSTNEAIQKIRSRMHTAQSRQ SYADVRR DLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

A0A5A7TU00 Pol protein

3.1e-190

97.6

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGM PFEALYGKCCRSPVCWGEVG QRLMGPELVQS NEAIQKIRSRMHTAQSRQ SYADVRR DLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

A0A5A7U7V9 Reverse transcriptase

1.1e-190

97.01

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGM PFEALYG+CCRSPVCWGEVG QRLMGPELVQSTNEAIQKIRSRMHTAQSRQ SYADVRRKDLEFE+GDKVFLKVAPM+GVLRF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

A0A5A7VDP3 Pol protein

1.1e-190

97.01

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGMTPFEALYG+CCRSPVCWGEVG QRLMGPELVQSTNEAIQKIRSRMHTAQSRQ SYADVRRKDLEFE+GDKVFLKVAPM+GVLRF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLS VHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

A0A5A7VJE2 Reverse transcriptase

2.4e-190

97.01

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTK+YQDLKRVYWWRNMKREVAEFVS+CLVCQ+VKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFH QTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG
        TIGM PFEALYG+CCRSPVCWGEVG QRLMGPELVQSTNEAIQKIRSRMHTAQSRQ SYADVRRKDLEFEVGDKVFLKVAPMRGV+RF+RRGKLSPRFVG
Subjt:  TIGMTPFEALYGKCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVG

Query:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
        PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR
Subjt:  PFEILERIGPVAYRLALPPSLSTVHDVFHVSMLR

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

7.2e-51

34.52

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  +  QTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF
           MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   +   Y D++ +++ EF+ GD V +K     G L   +  KL+P F
Subjt:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF

Query:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML
         GPF +L++ GP  Y L LP S+  +    FHVS L
Subjt:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML

P0CT35 Transposon Tf2-2 polyprotein

7.2e-51

34.52

Show/hide

Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  +  QTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF
           MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   +   Y D++ +++ EF+ GD V +K     G L   +  KL+P F
Subjt:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF

Query:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML
         GPF +L++ GP  Y L LP S+  +    FHVS L
Subjt:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML

P0CT36 Transposon Tf2-3 polyprotein

7.2e-51

34.52

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  +  QTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF
           MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   +   Y D++ +++ EF+ GD V +K     G L   +  KL+P F
Subjt:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF

Query:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML
         GPF +L++ GP  Y L LP S+  +    FHVS L
Subjt:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML

P0CT41 Transposon Tf2-12 polyprotein

7.2e-51

34.52

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  +  QTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF
           MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   +   Y D++ +++ EF+ GD V +K     G L   +  KL+P F
Subjt:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF

Query:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML
         GPF +L++ GP  Y L LP S+  +    FHVS L
Subjt:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML

Q9UR07 Transposon Tf2-11 polyprotein

7.2e-51

34.52

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  +  QTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF
           MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   +   Y D++ +++ EF+ GD V +K     G L   +  KL+P F
Subjt:  TIGMTPFEALYG-KCCRSPVCWGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFKRRGKLSPRF

Query:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML
         GPF +L++ GP  Y L LP S+  +    FHVS L
Subjt:  VGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSML

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCACCCGGGTAGTACGAAGATGTATCAGGATCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAAGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCG
GGTTAAGGCACCAAGGCAAAAGCCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGGCTGCCGAGAACTC
TGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATG
TCTGAGATAGTGAGATTGCATGGAGTGCCGGTGTCGATCGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTT
AGACTTTAGTACAGCTTTCCATCGACAAACTGACGGTCAAACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGG
ACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGACACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCAGTTTGC
TGGGGTGAGGTGGGTTGGCAGAGATTGATGGGCCCTGAGTTAGTTCAGTCTACCAACGAAGCGATACAGAAGATTAGATCACGTATGCATACCGCTCAGAGTAGACAGAA
TAGTTATGCAGATGTGAGGCGGAAGGATCTTGAATTTGAGGTAGGGGACAAGGTGTTCTTAAAAGTAGCACCTATGAGAGGTGTTTTACGATTTAAAAGGAGGGGAAAGC
TGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCACCATCGCTCTCGACAGTTCACGATGTGTTTCATGTC
TCTATGTTGAGGAATGGATCACGAGCCACTGGAGATTGA

mRNA sequence

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Protein sequence

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MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQRVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM
SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHRQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVC
WGEVGWQRLMGPELVQSTNEAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHV
SMLRNGSRATGD

Cmc03g0065671 (gene) of Melon (Charmono) v1.1 genome