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Cmc03g0065751 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0065751
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr03:7362993..7363481
RNA-Seq ExpressionCmc03g0065751
SyntenyCmc03g0065751
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN66576.1 hypothetical protein VITISV_016964 [Vitis vinifera]5.3e-7080.62Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        ++ +PKF  D NH+CE CVESK+TK PFHS ER T+PL+L HSDICDLKFVQTR GKKYFI FIDDCTRYCYVYLLKSKDEAIE+FK YK EVENQLS K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSG
        IKAIRSDRGGEY  PFE+FC EHGIIHQT APYSPQSNG+A+RKNRTLKE MNAML+SSG
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSG

KZV26201.1 hypothetical protein F511_28547 [Dorcoceras hygrometricum]1.0e-6574.07Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        +NL+P    +  H+CEVCVE+KMTK PFHS ER T PLELIHSDICDLKFVQTR GKKYF+ FIDDCTRYCYVYLL+ KDEA+E F+ YK EVENQL  +
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        IK IRSDRGGEY  PF+ +C + GIIHQTTAPYSPQSNG+A+RKNRTLKE MNA+LI+SGLP
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

KZV28460.1 hypothetical protein F511_03263 [Dorcoceras hygrometricum]8.8e-6572.84Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        +N++P F  +   +CE+CVE+K+ K PFHS  R TKPLELIH+D+CDLK VQTR GK+YFI FIDDCTRYCYVYLL+SKDEAIE F  YK EVENQL+ K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        IK IRSDRGGEY  PFE+FCS  GIIHQTTAPYSPQSNG+A+RKNRTLKE MNA+L +SGLP
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

RVW26252.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.3e-7180.86Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        ++ +PKF  DTNH+CE CVESK+TK PFHS ER T+PL+LIH+DICDLKFVQTR GKKYFI FIDDCTRYCYVYLL+SKDEAIE+FK YK EVENQLS K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        IKAIRSDRGGEY   FE+FC EHGIIHQTTAPYSPQSNGIA+ KNRTLKE MNAML+SSGLP
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

RVW91513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.6e-6675.93Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        MNL+P F+ D  H+CEVCVE+KM K PFHS E+ T+PL+LIHSDICDLKFVQTR  K YFI F+DDCTRYCYVYLL+SKDEA++VFK YK EVENQLS K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
         KAIRSDRGGE+  PF +FCS+HGIIHQTTAPYSPQSNG+++ KNRTLKE MNAMLIS GLP
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

TrEMBL top hitse value%identityAlignment
A0A2N9F9L9 Integrase catalytic domain-containing protein8.9e-7177.16Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        +NL+PKF  DTNH+CE CVE+K+T+TPFHS ER + PLELIHSD+CDLKFVQTR G+KYF+ FIDDCTRYCYVYLL+SKDEA+E F  YKKEVENQL+ K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        IK +RSDRGGEY  PF +FCS+HGI+HQTTAPYSPQ NG+A+RKNRTLKE MNAMLISSGLP
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

A0A2N9HDE2 Integrase catalytic domain-containing protein7.5e-7076.54Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        +NL+PKF  DTNH+CE CVE+K+T+T FHS ER + PLELIHSD+CDLKFVQTR G+KYF+ FIDDCTRYCYVYLL+SKDEA+E F  YKKEVENQL+ K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        IK +RSDRGGEY  PF +FCS+HGI+HQTTAPYSPQ NG+A+RKNRTLKE MNAMLISSGLP
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

A0A2N9J5F7 Integrase catalytic domain-containing protein7.5e-7076.54Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        +NL+PKF  DTNH+CE CVE+K+T+T FHS ER + PLELIHSD+CDLKFVQTR G+KYF+ FIDDCTRYCYVYLL+SKDEA+E F  YKKEVENQL+ K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        IK +RSDRGGEY  PF +FCS+HGI+HQTTAPYSPQ NG+A+RKNRTLKE MNAMLISSGLP
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

A0A438CSS8 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-7180.86Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        ++ +PKF  DTNH+CE CVESK+TK PFHS ER T+PL+LIH+DICDLKFVQTR GKKYFI FIDDCTRYCYVYLL+SKDEAIE+FK YK EVENQLS K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        IKAIRSDRGGEY   FE+FC EHGIIHQTTAPYSPQSNGIA+ KNRTLKE MNAML+SSGLP
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

A5CBN2 Uncharacterized protein2.6e-7080.62Show/hide
Query:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK
        ++ +PKF  D NH+CE CVESK+TK PFHS ER T+PL+L HSDICDLKFVQTR GKKYFI FIDDCTRYCYVYLLKSKDEAIE+FK YK EVENQLS K
Subjt:  MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIK

Query:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSG
        IKAIRSDRGGEY  PFE+FC EHGIIHQT APYSPQSNG+A+RKNRTLKE MNAML+SSG
Subjt:  IKAIRSDRGGEYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSG

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.3e-2235.1Show/hide
Query:  CEVCVESKMTKTPFHSTERMT---KPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGGE
        CE C+  K  + PF   +  T   +PL ++HSD+C      T D K YF+IF+D  T YC  YL+K K +   +F+ +  + E   ++K+  +  D G E
Subjt:  CEVCVESKMTKTPFHSTERMT---KPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGGE

Query:  Y-APPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGL
        Y +    QFC + GI +  T P++PQ NG+++R  RT+ EK   M+  + L
Subjt:  Y-APPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-3143.33Show/hide
Query:  CEVCVESKMTKTPFH-STERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGGEY-
        C+ C+  K  +  F  S+ER    L+L++SD+C    +++  G KYF+ FIDD +R  +VY+LK+KD+  +VF+ +   VE +   K+K +RSD GGEY 
Subjt:  CEVCVESKMTKTPFH-STERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGGEY-

Query:  APPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        +  FE++CS HGI H+ T P +PQ NG+A+R NRT+ EK+ +ML  + LP
Subjt:  APPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

Q12491 Transposon Ty2-B Gag-Pol polyprotein1.5e-1128.75Show/hide
Query:  TNHRCEVCVESKMTKTPFHSTERMT-----KPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLL--KSKDEAIEVFKLYKKEVENQLSIKIKA
        + ++C  C+  K TK       R+      +P + +H+DI        +    YFI F D+ TR+ +VY L  + ++  + VF      ++NQ + ++  
Subjt:  TNHRCEVCVESKMTKTPFHSTERMT-----KPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLL--KSKDEAIEVFKLYKKEVENQLSIKIKA

Query:  IRSDRGGEYA-PPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
        I+ DRG EY      +F +  GI    T     +++G+A+R NRTL      +L  SGLP
Subjt:  IRSDRGGEYA-PPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.7e-2337.58Show/hide
Query:  CEVCVESKMTKTPF-HSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGGEYA
        C  C+ +K  K PF  ST   T+PLE I+SD+     + + D  +Y++IF+D  TRY ++Y LK K +  E F  +K  +EN+   +I    SD GGE+ 
Subjt:  CEVCVESKMTKTPF-HSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGGEYA

Query:  PPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
          +E F S+HGI H T+ P++P+ NG+++RK+R + E    +L  + +P
Subjt:  PPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.6e-2136.24Show/hide
Query:  CEVCVESKMTKTPF-HSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGGEYA
        C  C  +K  K PF +ST   +KPLE I+SD+     +   D  +Y++IF+D  TRY ++Y LK K +  + F ++K  VEN+   +I  + SD GGE+ 
Subjt:  CEVCVESKMTKTPF-HSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGGEYA

Query:  PPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP
             + S+HGI H T+ P++P+ NG+++RK+R + E    +L  + +P
Subjt:  PPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATCAAAAATGACCAAAACACCTTTTCATTCCACTGAGAGAATGACCAAACC
TTTAGAGTTAATTCACAGTGATATTTGTGACTTGAAATTTGTGCAAACTAGAGATGGGAAAAAGTATTTTATTATTTTTATAGATGATTGCACAAGATATTGTTATGTTT
ATCTGCTGAAAAGCAAAGATGAGGCAATTGAAGTGTTTAAGCTTTATAAAAAAGAGGTTGAAAATCAACTTAGCATAAAAATTAAGGCAATAAGAAGTGATCGAGGTGGT
GAATATGCTCCTCCTTTTGAACAATTTTGTTCAGAACATGGCATTATTCACCAAACTACTGCTCCATACTCACCTCAATCCAATGGAATTGCTAAACGAAAAAACCGAAC
ACTTAAGGAAAAGATGAACGCTATGCTTATAAGTTCAGGTTTACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATCAAAAATGACCAAAACACCTTTTCATTCCACTGAGAGAATGACCAAACC
TTTAGAGTTAATTCACAGTGATATTTGTGACTTGAAATTTGTGCAAACTAGAGATGGGAAAAAGTATTTTATTATTTTTATAGATGATTGCACAAGATATTGTTATGTTT
ATCTGCTGAAAAGCAAAGATGAGGCAATTGAAGTGTTTAAGCTTTATAAAAAAGAGGTTGAAAATCAACTTAGCATAAAAATTAAGGCAATAAGAAGTGATCGAGGTGGT
GAATATGCTCCTCCTTTTGAACAATTTTGTTCAGAACATGGCATTATTCACCAAACTACTGCTCCATACTCACCTCAATCCAATGGAATTGCTAAACGAAAAAACCGAAC
ACTTAAGGAAAAGATGAACGCTATGCTTATAAGTTCAGGTTTACCCTAA
Protein sequenceShow/hide protein sequence
MNLIPKFTFDTNHRCEVCVESKMTKTPFHSTERMTKPLELIHSDICDLKFVQTRDGKKYFIIFIDDCTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSIKIKAIRSDRGG
EYAPPFEQFCSEHGIIHQTTAPYSPQSNGIAKRKNRTLKEKMNAMLISSGLP