CuGenDBv2

Gene ID	Cmc03g0066151
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr03:7996216..7996635
RNA-Seq Expression	Cmc03g0066151
Synteny	Cmc03g0066151
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004601 - peroxidase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037155.1 peroxidase 64 [Cucumis melo var. makuwa]

5.1e-45

71.88

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLK GYHQIRM  +DIE TAFRTHEGHY+F VMPFGLTN  +TFQSL+N++FR YL KFVLVFFD ILIYSR +E++  HLE+VLEVLR+H+LYAN+KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C FAY ++EY+GHI  G+GVEV  EKIR
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

KAA0052896.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.9e-45

72.66

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLK GYHQIRM   DIE TAFRTHEGHY+F VMPFGLTN  STFQSLMN+IF+SYL KFVLVFFDDILIYS+++E +LQHL + L+VLRK+ELYAN+KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C+FA ++++Y+GHI  G+GVEV  EKIR
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

KAA0061363.1 peroxidase 64 [Cucumis melo var. makuwa]

1.5e-44

70.31

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLKVGYHQIR   +D E TAFRTHEGHY+F +MPFGL N  +TFQSLMN+IFRSY+ KFVLVFFDDILIYSR +E+++ HLE+VLEVLR+H+LYAN+KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C+FA+ ++EY+GHI  G+GVEV  EK R
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

KAA0066147.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

8.7e-45

72.66

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLK GYHQIRMC +DIE TAFRTHEGHY+F VMPFGLTN  +TFQSLMN+IFR YL KFVLVFFDD LIYS+ LE++L H+E+VLE  R++ LYAN KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C FAYS++EY+GH+   RGVEV LEKIR
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

TYK14463.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.9e-45

72.66

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLK GYHQIRM   DIE TAFRTHEGHY+F VMPFGLTN  STFQSLMN+IF+SYL KFVLVFFDDILIYS+++E +LQHL + L+VLRK+ELYAN+KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C+FA ++++Y+GHI  G+GVEV  EKIR
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T6Q1 Peroxidase 64

2.5e-45

71.88

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLK GYHQIRM  +DIE TAFRTHEGHY+F VMPFGLTN  +TFQSL+N++FR YL KFVLVFFD ILIYSR +E++  HLE+VLEVLR+H+LYAN+KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C FAY ++EY+GHI  G+GVEV  EKIR
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

A0A5A7UFA3 Ty3/gypsy retrotransposon protein

1.9e-45

72.66

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLK GYHQIRM   DIE TAFRTHEGHY+F VMPFGLTN  STFQSLMN+IF+SYL KFVLVFFDDILIYS+++E +LQHL + L+VLRK+ELYAN+KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C+FA ++++Y+GHI  G+GVEV  EKIR
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

A0A5A7VGE3 Transposon Tf2-6 polyprotein

4.2e-45

72.66

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLK GYHQIRMC +DIE TAFRTHEGHY+F VMPFGLTN  +TFQSLMN+IFR YL KFVLVFFDD LIYS+ LE++L H+E+VLE  R++ LYAN KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C FAYS++EY+GH+   RGVEV LEKIR
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

A0A5D3CRH2 Ty3/gypsy retrotransposon protein

1.9e-45

72.66

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLK GYHQIRM   DIE TAFRTHEGHY+F VMPFGLTN  STFQSLMN+IF+SYL KFVLVFFDDILIYS+++E +LQHL + L+VLRK+ELYAN+KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C+FA ++++Y+GHI  G+GVEV  EKIR
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

A0A5D3CU29 Peroxidase 64

7.2e-45

70.31

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDLKVGYHQIR   +D E TAFRTHEGHY+F +MPFGL N  +TFQSLMN+IFRSY+ KFVLVFFDDILIYSR +E+++ HLE+VLEVLR+H+LYAN+KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C+FA+ ++EY+GHI  G+GVEV  EK R
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.4e-21

42.52

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDL  G+HQI M  + +  TAF T  GHY++  MPFGL N  +TFQ  MN I R  L+K  LV+ DDI+++S +L+++LQ L +V E L K  L     K
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKI
        C F      ++GH+    G++   EKI
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKI

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.7e-19

39.84

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        IDL  G+HQI M  + I  TAF T  GHY++  MPFGL N  +TFQ  MN I R  L+K  LV+ DDI+I+S +L ++L  +++V   L    L     K
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR
        C F      ++GHI    G++    K++
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.5e-18

43.31

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        +DL  GYHQI M   D   TAF T  G Y++ VMPFGL N  STF   M   FR    +FV V+ DDILI+S + E++ +HL+ VLE L+   L   +KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKI
        C FA    E++G+        +G++KI
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.9e-18

35.88

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        +DL  G+HQI M   DI  TAF T  G Y+F  +PFGL N  + FQ +++ I R ++ K   V+ DDI+++S + + + ++L +VL  L K  L  N +K
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKIRQSS
          F  +++E++G+I    G++   +K+R  S
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKIRQSS

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.5e-18

43.31

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Query:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK
        +DL  GYHQI M   D   TAF T  G Y++ VMPFGL N  STF   M   FR    +FV V+ DDILI+S + E++ +HL+ VLE L+   L   +KK
Subjt:  IDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKK

Query:  CTFAYSRIEYVGHIKFGRGVEVGLEKI
        C FA    E++G+        +G++KI
Subjt:  CTFAYSRIEYVGHIKFGRGVEVGLEKI

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

6.5e-06

45.1

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Query:  LQHLEMVLEVLRKHELYANRKKCTFAYSRIEYVG--HIKFGRGVEVGLEKI
        + HL MVL++  +H+ YANRKKC F   +I Y+G  HI  G GV     K+
Subjt:  LQHLEMVLEVLRKHELYANRKKCTFAYSRIEYVG--HIKFGRGVEVGLEKI

Sequences

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CDS sequence

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ATGATAGATTTGAAAGTAGGGTACCATCAAATTAGAATGTGTTATGATGACATAGAAAACACCGCATTTAGAACACATGAAGGGCATTACAAATTTTTCGTTATGCCATT
TGGACTAACTAATAACCTTTCAACGTTTCAGTCCCTCATGAATACTATATTTCGATCATATTTAAGCAAATTTGTCTTAGTGTTCTTTGATGACATATTGATATATAGCA
GGAATTTGGAAAAGAACCTACAACATCTGGAAATGGTATTAGAAGTACTAAGGAAGCATGAACTTTATGCAAACAGAAAGAAATGTACCTTTGCCTATTCAAGGATAGAG
TATGTAGGCCATATCAAATTTGGAAGGGGAGTGGAAGTGGGCTTGGAGAAAATCAGGCAATCAAGCAATTGTCGATTCCTACCAATGTGA

mRNA sequence

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Protein sequence

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MIDLKVGYHQIRMCYDDIENTAFRTHEGHYKFFVMPFGLTNNLSTFQSLMNTIFRSYLSKFVLVFFDDILIYSRNLEKNLQHLEMVLEVLRKHELYANRKKCTFAYSRIE
YVGHIKFGRGVEVGLEKIRQSSNCRFLPM

Cmc03g0066151 (gene) of Melon (Charmono) v1.1 genome