| GenBank top hits | e value | %identity | Alignment |
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| KAA0035900.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 3.6e-54 | 93.16 | Show/hide |
Query: MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
M DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFD SKHLKKN+GDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
Subjt: MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
Query: DRYHWNALRHLLRYVKG
DRY W+ALRHLLRY+KG
Subjt: DRYHWNALRHLLRYVKG
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| KAA0045258.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 1.2e-54 | 83.33 | Show/hide |
Query: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVR---------TPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLD
+ SHFEM DL EAD+I GVKIRKNK+S+SLCQSHYVEKILKKFDSFDVSPVR TPFDASKHLKKN+GDSVSQP+YAKIIGSVMYLMNYTRLD
Subjt: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVR---------TPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLD
Query: IAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
IAY VSRLSRYTHNPDRYHW+ALRHLLRY+KG
Subjt: IAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
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| KAA0049695.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 2.8e-59 | 88.72 | Show/hide |
Query: MELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRL
MEL+ D K FLSSHFEM DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFD FDVSPVRTPFDASKHL KN+GDSVSQPEYAKIIGSVMYLMNYTR
Subjt: MELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRL
Query: DIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
DIAY VSRLSRYTHNPDRYHW+ LRHLLRY+KG
Subjt: DIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
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| TYK04656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 1.6e-54 | 93.16 | Show/hide |
Query: MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
M DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKN+GDSVSQPEYAKIIGSVMYLMNYTRLDIAY VSRLSRYT NP
Subjt: MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
Query: DRYHWNALRHLLRYVKG
DRYHW+ALRHLLRY+KG
Subjt: DRYHWNALRHLLRYVKG
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| TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 8.4e-64 | 90.71 | Show/hide |
Query: MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMY
MLIF TNMELI D K FLSSHFEM DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKN+GDSVSQPEYAKIIGSVMY
Subjt: MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMY
Query: LMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
LMNYTR DIAY VSRLSRYTHNP+RYHW+ALRHLLRY+KG
Subjt: LMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TQW7 Ty1-copia retrotransposon protein | 5.9e-55 | 83.33 | Show/hide |
Query: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVR---------TPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLD
+ SHFEM DL EAD+I GVKIRKNK+S+SLCQSHYVEKILKKFDSFDVSPVR TPFDASKHLKKN+GDSVSQP+YAKIIGSVMYLMNYTRLD
Subjt: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVR---------TPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLD
Query: IAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
IAY VSRLSRYTHNPDRYHW+ALRHLLRY+KG
Subjt: IAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
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| A0A5A7U7W6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.4e-59 | 88.72 | Show/hide |
Query: MELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRL
MEL+ D K FLSSHFEM DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFD FDVSPVRTPFDASKHL KN+GDSVSQPEYAKIIGSVMYLMNYTR
Subjt: MELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRL
Query: DIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
DIAY VSRLSRYTHNPDRYHW+ LRHLLRY+KG
Subjt: DIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
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| A0A5D3C2K6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 7.7e-55 | 93.16 | Show/hide |
Query: MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
M DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKN+GDSVSQPEYAKIIGSVMYLMNYTRLDIAY VSRLSRYT NP
Subjt: MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
Query: DRYHWNALRHLLRYVKG
DRYHW+ALRHLLRY+KG
Subjt: DRYHWNALRHLLRYVKG
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| A0A5D3C5T2 Ty1-copia retrotransposon protein | 4.1e-64 | 90.71 | Show/hide |
Query: MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMY
MLIF TNMELI D K FLSSHFEM DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKN+GDSVSQPEYAKIIGSVMY
Subjt: MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMY
Query: LMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
LMNYTR DIAY VSRLSRYTHNP+RYHW+ALRHLLRY+KG
Subjt: LMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
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| A0A5D3D697 Ty1-copia retrotransposon protein | 1.7e-54 | 93.16 | Show/hide |
Query: MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
M DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFD SKHLKKN+GDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
Subjt: MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNP
Query: DRYHWNALRHLLRYVKG
DRY W+ALRHLLRY+KG
Subjt: DRYHWNALRHLLRYVKG
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 5.4e-13 | 32.14 | Show/hide |
Query: MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMY
++I +M + + K +L F M DL E G++I + + L QS YV+KIL KF+ + + V TP + + + D +IG +MY
Subjt: MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMY
Query: LMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
+M TR D+ V+ LSRY+ + W L+ +LRY+KG
Subjt: LMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.3e-18 | 37.58 | Show/hide |
Query: MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTS--LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKK-------NEGDSVSQPEY
MLI + LI +K LS F+M DL A I G+KI + +TS L L Q Y+E++L++F+ + PV TP L K E ++++ Y
Subjt: MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTS--LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKK-------NEGDSVSQPEY
Query: AKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
+ +GS+MY M TR DIA+ V +SR+ NP + HW A++ +LRY++G
Subjt: AKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG
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| P92519 Uncharacterized mitochondrial protein AtMg00810 | 6.6e-11 | 31.71 | Show/hide |
Query: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLS
LSS F M DL G++I+ + + L L Q+ Y E+IL D P+ TP + + ++ I+G++ YL TR DI+Y V+ +
Subjt: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLS
Query: RYTHNPDRYHWNALRHLLRYVKG
+ H P ++ L+ +LRYVKG
Subjt: RYTHNPDRYHWNALRHLLRYVKG
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.3e-14 | 36.29 | Show/hide |
Query: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQP-EYAKIIGSVMYLMNYTRLDIAYVVSRL
LS F + D E G++ ++ T L L Q Y+ +L + + PV TP S L G ++ P EY I+GS+ YL +TR DI+Y V+RL
Subjt: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQP-EYAKIIGSVMYLMNYTRLDIAYVVSRL
Query: SRYTHNPDRYHWNALRHLLRYVKG
S++ H P H AL+ +LRY+ G
Subjt: SRYTHNPDRYHWNALRHLLRYVKG
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 7.5e-15 | 35.48 | Show/hide |
Query: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQP-EYAKIIGSVMYLMNYTRLDIAYVVSRL
LS F + + + G++ ++ L L Q Y +L + + PV TP S L + G + P EY I+GS+ YL +TR D++Y V+RL
Subjt: LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQP-EYAKIIGSVMYLMNYTRLDIAYVVSRL
Query: SRYTHNPDRYHWNALRHLLRYVKG
S+Y H P HWNAL+ +LRY+ G
Subjt: SRYTHNPDRYHWNALRHLLRYVKG
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