CuGenDBv2

Gene ID	Cmc03g0066471
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr03:8439467..8440420
RNA-Seq Expression	Cmc03g0066471
Synteny	Cmc03g0066471
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR036397 - Ribonuclease H superfamily IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025917.1 pol protein [Cucumis melo var. makuwa]

8.9e-170

99.34

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLG VLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLKNHE+NYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

KAA0054634.1 pol protein [Cucumis melo var. makuwa]

2.2e-168

98.02

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+KLYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

KAA0060745.1 pol protein [Cucumis melo var. makuwa]

1.1e-167

97.69

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+KLYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLV APVLTVPDGSG+FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

KAA0063793.1 pol protein [Cucumis melo var. makuwa]

8.3e-168

97.69

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+KLYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACE SFQELKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

KAA0066951.1 pol protein [Cucumis melo var. makuwa]

2.2e-168

98.02

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+KLYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TP01 Reverse transcriptase

4.3e-170

99.34

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLG VLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLKNHE+NYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

A0A5A7UHL7 Reverse transcriptase

1.1e-168

98.02

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+KLYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

A0A5A7V4E4 Reverse transcriptase

5.3e-168

97.69

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+KLYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLV APVLTVPDGSG+FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

A0A5A7V6R2 Reverse transcriptase

4.0e-168

97.69

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+KLYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACE SFQELKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

A0A5A7VMR4 Reverse transcriptase

1.1e-168

98.02

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+KLYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
        PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
        SRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Subjt:  SRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK

Query:  QTP
        QTP
Subjt:  QTP

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.4e-61

41.03

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        M FGL NAPA F   MN + +  L++  +V++DDI+++S +  EH + L  V E L    L  +  KCEF  ++ TFLGHV++ +G+  +P K+EA+  +
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY
        P P+   EI++FLGL GYYR+F+ +F+ IA P+T+  +K       +P  +S+F++LK  +   P+L VPD +  F + +DAS   LG VL Q G  ++Y
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
         SR L  HE NY T + EL A+V+A K +RHYL G   +I +DH+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR
Subjt:  ASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

P0CT41 Transposon Tf2-12 polyprotein

5.3e-48

35.67

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        M +G++ APA F   +N +  +  +  V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +KCEF   +V F+G+ +S +G +     ++ V  W
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----
         +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+P    + + +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR V
Subjt:  VVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

6.4e-54

36.3

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        + FGL NA ++F   ++ V ++ + +   V++DD++I+S+ E++H  H+  VL+ L    +     K  F+ + V +LG +VS +G   DP KV+A+  +
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLVTAPV-LTVPDGSGSFVIYSDASKKGLGC
        P P  V ++RSFLGLA YYR F++DF+ IA P+T + +           K  P  ++    ++FQ L+  L +  V L  PD    F + +DAS  G+G 
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLVTAPV-LTVPDGSGSFVIYSDASKKGLGC

Query:  VLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEK-IQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAL
        VL Q+G+ +   SR LK  EQNY T++ EL A+V+AL   +++LYG + I I+TDH+ L +    +  N + +RW   +  ++ ++ Y PGK N VADAL
Subjt:  VLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEK-IQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAL

Query:  SRK
        SR+
Subjt:  SRK

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.6e-57

39.66

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        M FGL NAPA F   MN + +  L++  +V++DDI+I+S +  EH   +  V   L    L  +  KCEF  K+  FLGH+V+ +G+  +P KV+A+ ++
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY
        P P+   EIR+FLGL GYYR+F+ +++ IA P+T   +K T           +F++LK  ++  P+L +PD    FV+ +DAS   LG VL Q G  +++
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
         SR L +HE NY   + EL A+V+A K +RHYL G +  I +DH+ L++    KE   +  RW   + +Y  +I Y  GK N VADALSR
Subjt:  ASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

8.9e-56

36.07

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW
        + FGL NAPA+F  +++ + ++ + +   V+IDDI+++S+    H ++L  VL +L    L     K  F   +V FLG++V+++G+  DP KV A++  
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNW

Query:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCV
        P P++V E++ FLG+  YYR+F++D++++A PLT LTR              P         SF +LK  L ++ +L  P  +  F + +DAS   +G V
Subjt:  PRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCV

Query:  LMQ----QGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGE-KIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA
        L Q    + + +AY SR L   E+NY T + E+ A++++L   R YLYG   I++YTDH+ L +    +  N + +RW   +++Y+CE++Y PGK+NVVA
Subjt:  LMQ----QGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGE-KIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA

Query:  DALSR
        DALSR
Subjt:  DALSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.1e-27

44.27

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Query:  HLHQVLETLRAHKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW
        HL  VL+    H+ YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  WP P   +E+R FLGL GYYRRFV+++ +I  PLT+L +K +   W
Subjt:  HLHQVLETLRAHKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVW

Query:  SPACESSFQELKQKLVTAPVLTVPDGSGSFV
        +     +F+ LK  + T PVL +PD    FV
Subjt:  SPACESSFQELKQKLVTAPVLTVPDGSGSFV

Sequences

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CDS sequence

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ATGTCCTTTGGTTTAACTAATGCCCCTGCAGTGTTCATGGACCTGATGAACAGGGTGTTTAAGGACTTTCTAGACCAATTCGTCATAGTCTTCATTGACGATATCTTGAT
CTATTCCAAGACTGAGGCCGAACACGAAGAGCACTTGCACCAAGTCTTGGAGACCCTTCGAGCTCATAAGCTATACGCCAAGTTCTCCAAGTGTGAGTTCTGGTTAAAGA
AGGTGACATTTTTAGGGCACGTGGTTTCCAGTGAGGGAGTCTCGGTGGACCCAGCTAAGGTCGAAGCGGTGACCAACTGGCCTCGACCGTCTACAGTCAGTGAGATTCGC
AGTTTTCTGGGTCTGGCAGGATACTACAGGAGGTTTGTAGAAGACTTCTCACGCATAGCCAGCCCATTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCC
AGCATGTGAGAGTAGTTTCCAAGAGCTTAAGCAGAAGCTAGTGACGGCACCAGTCCTGACAGTGCCTGATGGGTCGGGAAGTTTTGTGATCTATAGTGATGCCTCTAAGA
AAGGACTGGGATGTGTCCTGATGCAGCAAGGTAAGGTAGTTGCGTATGCCTCACGCCAGTTGAAGAATCATGAGCAGAACTACCCTACCCACGACTTGGAGTTGGCAGCT
GTAGTCTTTGCACTGAAGATATGGAGGCACTATCTGTACGGTGAGAAGATTCAGATTTACACCGACCACAAGAGCCTGAAGTATTTCTTCACTCAGAAGGAGTTGAACAT
GAGGCAGAGGAGGTGGCTCGAGTTGGTGAAAGACTACGACTGCGAGATCCTGTACCATCCAGGTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGGAAGGTTGCACATT
CAGCAGCGCTAATCACGAAGCAGACCCCCCCTTACTCAGGGATTTGGAGAGAGCCGAGATTGCAGTCTCAGTAG

mRNA sequence

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Protein sequence

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MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIR
SFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAA
VVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPPYSGIWREPRLQSQ

Cmc03g0066471 (gene) of Melon (Charmono) v1.1 genome