; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0067021 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0067021
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr03:9502015..9502839
RNA-Seq ExpressionCmc03g0067021
SyntenyCmc03g0067021
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037650.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.0e-13388.32Show/hide
Query:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL
        MIADLCYVS I PTSVENA KDEYWIN++QEELL FKRNNVWT+VPK DGANVIGTKWIFKNK DESGSIIRNKA L+AQGYAQV+GVD DETFALVARL
Subjt:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL

Query:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
        EAI LLLSISCFRKFKLF+MDVKSAFLNGYLNEEVYVAQ KGFVD EF QYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGET++TLF+N  STDL
Subjt:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL

Query:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS
        I+AQIYVDDIIFGGFPKTL+DNFINIMK EFEMSLVGELSCFLGL+IKQR   MFISQ+KYAKNLVKKFGLD S
Subjt:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS

KAA0038418.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.0e-12583.52Show/hide
Query:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL
        MIADLCYVS I PT VENALKDEYWIN++QEELL FKRN+VWTLVPK DGAN+IGTKWIFKNK DESG +IRNKA LVAQGYAQV+GVD DETFA VARL
Subjt:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL

Query:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
        EAI  LLS+SCFRKFKL+QMDVKSAFLNGYLNE+VYVAQLKGFVD EF QYVYKLN ALYGLKQAPR WYERLTMYLG++GYSRGET KTLF+N  +T L
Subjt:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL

Query:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH
         +AQIYVDDIIFGGFPKTLV+NFI+IMKSEFEMSLVGELS FLGL+IKQR  G+FISQE+YAKN+VKKF LDH
Subjt:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH

KAA0059848.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.8e-153100Show/hide
Query:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL
        MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL
Subjt:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL

Query:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
        EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
Subjt:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL

Query:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS
        ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS
Subjt:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS

TYJ96974.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.7e-12282.35Show/hide
Query:  IADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLE
        IADLCYVS I PT VENALKDEYWIN++QEELL FKRN+VWTLVPK DG N+IGTKWIFKNK DESG +IRNKA LVAQGYAQV+GVD DETFA VARLE
Subjt:  IADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLE

Query:  AICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLI
        AI  LLS+SCFRKFKL+Q+DVKSAFLNGYLNE+VYVAQLKGFVD EF QYVYKLN ALYGLKQAPR  YERLTMYLG++GYSRGET KTLF+N  +T L 
Subjt:  AICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLI

Query:  LAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH
        +AQIYVDDIIFGGFPKTLV+NFI+IMKSEFEMSLVGELS FLGL+IKQR  G+FISQE YAKN+VKKF LDH
Subjt:  LAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH

TYJ98295.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.5e-12085.83Show/hide
Query:  KDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISCFRKFKLFQM
        KDEYWIN +QEELL FK NNVWTLVPK DGAN+IGTKWIFKNK DESGS++RNKACLVAQGYAQV+GVD DETFA VARLEAI LLL ISCFRKFKLFQM
Subjt:  KDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISCFRKFKLFQM

Query:  DVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDIIFGGFPKTLV
        DVKSAFLNGYLNEEVYVAQ KGF+D EF QYVYK+NKALYGLKQAPRAWYERL +YL ERGYS+GETDKTLF+N  STDLI+AQIYVDDIIFGGFPKTLV
Subjt:  DVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDIIFGGFPKTLV

Query:  DNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS
        +NFINI+KSEFE+SLVG+LS FLGL+IKQR  GMFISQEKYAKNLVKKFGLD S
Subjt:  DNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS

TrEMBL top hitse value%identityAlignment
A0A5A7T2Q0 Gag-pol polyprotein9.6e-13488.32Show/hide
Query:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL
        MIADLCYVS I PTSVENA KDEYWIN++QEELL FKRNNVWT+VPK DGANVIGTKWIFKNK DESGSIIRNKA L+AQGYAQV+GVD DETFALVARL
Subjt:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL

Query:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
        EAI LLLSISCFRKFKLF+MDVKSAFLNGYLNEEVYVAQ KGFVD EF QYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGET++TLF+N  STDL
Subjt:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL

Query:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS
        I+AQIYVDDIIFGGFPKTL+DNFINIMK EFEMSLVGELSCFLGL+IKQR   MFISQ+KYAKNLVKKFGLD S
Subjt:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS

A0A5A7T6D6 Gag-pol polyprotein9.6e-12683.52Show/hide
Query:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL
        MIADLCYVS I PT VENALKDEYWIN++QEELL FKRN+VWTLVPK DGAN+IGTKWIFKNK DESG +IRNKA LVAQGYAQV+GVD DETFA VARL
Subjt:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL

Query:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
        EAI  LLS+SCFRKFKL+QMDVKSAFLNGYLNE+VYVAQLKGFVD EF QYVYKLN ALYGLKQAPR WYERLTMYLG++GYSRGET KTLF+N  +T L
Subjt:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL

Query:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH
         +AQIYVDDIIFGGFPKTLV+NFI+IMKSEFEMSLVGELS FLGL+IKQR  G+FISQE+YAKN+VKKF LDH
Subjt:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH

A0A5A7UXB2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-153100Show/hide
Query:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL
        MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL
Subjt:  MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARL

Query:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
        EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
Subjt:  EAICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL

Query:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS
        ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS
Subjt:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS

A0A5D3BD92 Gag-pol polyprotein1.3e-12282.35Show/hide
Query:  IADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLE
        IADLCYVS I PT VENALKDEYWIN++QEELL FKRN+VWTLVPK DG N+IGTKWIFKNK DESG +IRNKA LVAQGYAQV+GVD DETFA VARLE
Subjt:  IADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLE

Query:  AICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLI
        AI  LLS+SCFRKFKL+Q+DVKSAFLNGYLNE+VYVAQLKGFVD EF QYVYKLN ALYGLKQAPR  YERLTMYLG++GYSRGET KTLF+N  +T L 
Subjt:  AICLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLI

Query:  LAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH
        +AQIYVDDIIFGGFPKTLV+NFI+IMKSEFEMSLVGELS FLGL+IKQR  G+FISQE YAKN+VKKF LDH
Subjt:  LAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH

A0A5D3BIP9 Gag-pol polyprotein1.2e-12085.83Show/hide
Query:  KDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISCFRKFKLFQM
        KDEYWIN +QEELL FK NNVWTLVPK DGAN+IGTKWIFKNK DESGS++RNKACLVAQGYAQV+GVD DETFA VARLEAI LLL ISCFRKFKLFQM
Subjt:  KDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISCFRKFKLFQM

Query:  DVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDIIFGGFPKTLV
        DVKSAFLNGYLNEEVYVAQ KGF+D EF QYVYK+NKALYGLKQAPRAWYERL +YL ERGYS+GETDKTLF+N  STDLI+AQIYVDDIIFGGFPKTLV
Subjt:  DVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDIIFGGFPKTLV

Query:  DNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS
        +NFINI+KSEFE+SLVG+LS FLGL+IKQR  GMFISQEKYAKNLVKKFGLD S
Subjt:  DNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.7e-4035.06Show/hide
Query:  WINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISCFRKFKLFQMDVKS
        W  +I  EL   K NN WT+  + +  N++ ++W+F  K +E G+ IR KA LVA+G+ Q   +D +ETFA VAR+ +   +LS+      K+ QMDVK+
Subjt:  WINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISCFRKFKLFQMDVKS

Query:  AFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTAS--TDLILAQIYVDDIIFGGFPKTLVDN
        AFLNG L EE+Y+   +G         V KLNKA+YGLKQA R W+E     L E  +     D+ +++       + I   +YVDD++      T ++N
Subjt:  AFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTAS--TDLILAQIYVDDIIFGGFPKTLVDN

Query:  FINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH
        F   +  +F M+ + E+  F+G+ I+ +   +++SQ  Y K ++ KF +++
Subjt:  FINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDH

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-3633.33Show/hide
Query:  INSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISCFRKFKLFQMDVKSA
        + ++QEE+   ++N  + LV    G   +  KW+FK K D    ++R KA LV +G+ Q KG+D DE F+ V ++ +I  +LS++     ++ Q+DVK+A
Subjt:  INSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISCFRKFKLFQMDVKSA

Query:  FLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTL-FVNTASTDLILAQIYVDDIIFGGFPKTLVDNFI
        FL+G L EE+Y+ Q +GF        V KLNK+LYGLKQAPR WY +   ++  + Y +  +D  + F   +  + I+  +YVDD++  G  K L+    
Subjt:  FLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTL-FVNTASTDLILAQIYVDDIIFGGFPKTLVDNFI

Query:  NIMKSEFEMSLVGELSCFLGLEI--KQRGGGMFISQEKYAKNLVKKFGLDHS
          +   F+M  +G     LG++I  ++    +++SQEKY + ++++F + ++
Subjt:  NIMKSEFEMSLVGELSCFLGLEI--KQRGGGMFISQEKYAKNLVKKFGLDHS

P25600 Putative transposon Ty5-1 protein YCL074W7.8e-1635.07Show/hide
Query:  MDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDIIFGGFPKTL
        MDV +AFLN  ++E +YV Q  GFV+     YV++L   +YGLKQAP  W E +   L + G+ R E +  L+  + S   I   +YVDD++       +
Subjt:  MDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDIIFGGFPKTL

Query:  VDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGG
         D     +   + M  +G++  FLGL I Q   G
Subjt:  VDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGG

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.2e-4639.3Show/hide
Query:  PTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDG-ANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISC
        P +   ALKDE W N++  E+     N+ W LVP       ++G +WIF  K +  GS+ R KA LVA+GY Q  G+D  ETF+ V +  +I ++L ++ 
Subjt:  PTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDG-ANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISC

Query:  FRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDII
         R + + Q+DV +AFL G L ++VY++Q  GF+D++   YV KL KALYGLKQAPRAWY  L  YL   G+    +D +LFV      ++   +YVDDI+
Subjt:  FRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDII

Query:  FGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKK
          G   TL+ N ++ +   F +    EL  FLG+E K+   G+ +SQ +Y  +L+ +
Subjt:  FGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.8e-4437.35Show/hide
Query:  PTSVENALKDEYWINSIQEELLPFKRNNVWTLV-PKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISC
        P +   A+KD+ W  ++  E+     N+ W LV P      ++G +WIF  K +  GS+ R KA LVA+GY Q  G+D  ETF+ V +  +I ++L ++ 
Subjt:  PTSVENALKDEYWINSIQEELLPFKRNNVWTLV-PKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSISC

Query:  FRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDII
         R + + Q+DV +AFL G L +EVY++Q  GFVD++   YV +L KA+YGLKQAPRAWY  L  YL   G+    +D +LFV      +I   +YVDDI+
Subjt:  FRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDII

Query:  FGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKK
          G    L+ + ++ +   F +    +L  FLG+E K+   G+ +SQ +Y  +L+ +
Subjt:  FGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.2e-4134.69Show/hide
Query:  LCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAIC
        +C      P++   A +   W  ++ +E+   +  + W +         IG KW++K K +  G+I R KA LVA+GY Q +G+D  ETF+ V +L ++ 
Subjt:  LCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAIC

Query:  LLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREF----LQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL
        L+L+IS    F L Q+D+ +AFLNG L+EE+Y+    G+  R+        V  L K++YGLKQA R W+ + ++ L   G+ +  +D T F+   +T  
Subjt:  LLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREF----LQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDL

Query:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGL
        +   +YVDDII        VD   + +KS F++  +G L  FLGLEI +   G+ I Q KYA +L+ + GL
Subjt:  ILAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGL

ATMG00810.1 DNA/RNA polymerases superfamily protein1.0e-0738.81Show/hide
Query:  IYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGL
        +YVDDI+  G   TL++  I  + S F M  +G +  FLG++IK    G+F+SQ KYA+ ++   G+
Subjt:  IYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGL

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)4.7e-1641.84Show/hide
Query:  PTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSIS
        P SV  ALKD  W  ++QEEL    RN  W LVP     N++G KW+FK K+   G++ R KA LVA+G+ Q +G+   ET++ V R   I  +L+++
Subjt:  PTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCTGATTTATGCTATGTATCAACAATTGTACCCACATCTGTTGAAAATGCTCTCAAGGATGAATATTGGATAAATTCCATACAAGAAGAGTTGTTACCGTTCAA
GCGTAACAACGTTTGGACTTTGGTTCCTAAACATGATGGGGCAAACGTCATAGGAACTAAGTGGATCTTTAAAAATAAAATTGATGAATCTGGAAGTATTATAAGGAACA
AAGCCTGTTTGGTAGCTCAAGGTTATGCACAGGTAAAAGGTGTTGATTCTGATGAAACTTTTGCACTTGTAGCTAGACTTGAAGCTATTTGCCTCTTGCTCAGTATATCA
TGTTTCCGAAAATTTAAATTGTTTCAAATGGACGTTAAAAGTGCCTTCTTGAATGGATACTTAAATGAGGAAGTCTATGTAGCACAACTTAAAGGATTTGTTGATCGTGA
ATTTCTGCAGTATGTCTACAAGCTGAATAAAGCCCTATATGGGTTGAAGCAAGCTCCTCGAGCTTGGTATGAACGACTAACAATGTATCTTGGTGAAAGAGGATATTCTA
GGGGTGAGACTGACAAGACACTATTCGTAAATACAGCCAGCACTGATCTCATTCTAGCTCAAATTTATGTTGATGACATCATCTTCGGTGGATTTCCTAAAACTCTTGTT
GATAACTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTGTCCTGCTTTCTGGGGTTAGAAATCAAACAAAGAGGTGGGGGAATGTTTATATC
ACAGGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGCTGATTTATGCTATGTATCAACAATTGTACCCACATCTGTTGAAAATGCTCTCAAGGATGAATATTGGATAAATTCCATACAAGAAGAGTTGTTACCGTTCAA
GCGTAACAACGTTTGGACTTTGGTTCCTAAACATGATGGGGCAAACGTCATAGGAACTAAGTGGATCTTTAAAAATAAAATTGATGAATCTGGAAGTATTATAAGGAACA
AAGCCTGTTTGGTAGCTCAAGGTTATGCACAGGTAAAAGGTGTTGATTCTGATGAAACTTTTGCACTTGTAGCTAGACTTGAAGCTATTTGCCTCTTGCTCAGTATATCA
TGTTTCCGAAAATTTAAATTGTTTCAAATGGACGTTAAAAGTGCCTTCTTGAATGGATACTTAAATGAGGAAGTCTATGTAGCACAACTTAAAGGATTTGTTGATCGTGA
ATTTCTGCAGTATGTCTACAAGCTGAATAAAGCCCTATATGGGTTGAAGCAAGCTCCTCGAGCTTGGTATGAACGACTAACAATGTATCTTGGTGAAAGAGGATATTCTA
GGGGTGAGACTGACAAGACACTATTCGTAAATACAGCCAGCACTGATCTCATTCTAGCTCAAATTTATGTTGATGACATCATCTTCGGTGGATTTCCTAAAACTCTTGTT
GATAACTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTGTCCTGCTTTCTGGGGTTAGAAATCAAACAAAGAGGTGGGGGAATGTTTATATC
ACAGGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCATTCATAA
Protein sequenceShow/hide protein sequence
MIADLCYVSTIVPTSVENALKDEYWINSIQEELLPFKRNNVWTLVPKHDGANVIGTKWIFKNKIDESGSIIRNKACLVAQGYAQVKGVDSDETFALVARLEAICLLLSIS
CFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKGFVDREFLQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETDKTLFVNTASTDLILAQIYVDDIIFGGFPKTLV
DNFINIMKSEFEMSLVGELSCFLGLEIKQRGGGMFISQEKYAKNLVKKFGLDHS