; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0067181 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0067181
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationCMiso1.1chr03:9790840..9793991
RNA-Seq ExpressionCmc03g0067181
SyntenyCmc03g0067181
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022930025.1 uncharacterized protein LOC111436463, partial [Cucurbita moschata]1.6e-3878.57Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKLVYSTTCHPQTDGQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTPID
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
XP_022930059.1 uncharacterized protein LOC111436530, partial [Cucurbita moschata]1.6e-3878.57Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKLVYSTTCHPQTDGQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTPID
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
XP_022946091.1 uncharacterized protein LOC111450286, partial [Cucurbita moschata]1.6e-3878.57Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKLVYSTTCHPQTDGQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTPID
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
XP_022971168.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111469947 [Cucurbita maxima]3.7e-3876.53Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKL+YSTTCHPQTDGQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTP+D
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
XP_023541047.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111801285 [Cucurbita pepo subsp. pepo]4.3e-3979.59Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKLVYSTTCHPQTDGQT+VVNRT  TMLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTPID
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
TrEMBL top hitse value%identityAlignment
A0A6J1EQJ1 uncharacterized protein LOC1114365308.0e-3978.57Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKLVYSTTCHPQTDGQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTPID
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
A0A6J1EVV9 uncharacterized protein LOC1114364638.0e-3978.57Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKLVYSTTCHPQTDGQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTPID
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
A0A6J1G2Q3 uncharacterized protein LOC1114502868.0e-3978.57Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKLVYSTTCHPQTDGQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTPID
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
A0A6J1I622 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699471.8e-3876.53Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKL+YSTTCHPQTDGQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTP+D
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699481.5e-3776.53Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
        IV+DRDVKF SHFW+V WG+L TKLVYSTTCHPQT GQT+VVNRT   MLRA+IDKN KTW+D LPFIEF YN+V  S TKC+ FEIVYGFNPLTP+D
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPID
SwissProt top hitse value%identityAlignment
Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.2e-1038.54Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTP
        I +DRDV+ ++  ++     L  K   S+  HPQTDGQ++   +T   +LRA +  N + W  +LP IEFVYN         S FEI  G+ P TP
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTP
Q99315 Transposon Ty3-G Gag-Pol polyprotein3.4e-1038.54Show/hide
Query:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTP
        I +DRDV+ ++  ++     L  K   S+  HPQTDGQ++   +T   +LRA    N + W  +LP IEFVYN         S FEI  G+ P TP
Subjt:  IVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTP
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACGACATTGTTAATGATAGAGATGTGAAATTCTCAAGTCACTTTTGGAAAGTACATTGGGGAGAACTTAGTACTAAGTTAGTTTACTCCACTACGTGCCAT
CCTCAAACTGATGGACAAACTCAGGTAGTCAATAGGACGACGATGACTATGCTTAGGGCTCTAATAGATAAAAATACCAAAACTTGGAAGGATTTTCTACCATTT
ATTGAGTTTGTATACAATAAGGTATTTCGTAGTGTGACTAAATGTTCATCGTTTGAGATTGTATATGGTTTTAATCCTTTAACACCTATTGACTCGTTCCTTTGC
CTTCTAATGAGGTGGTGA
mRNA sequenceShow/hide mRNA sequence
AAGGTTTCATAACTCTTTTGGTTGGCTATTGTTGCTTAAATATAGGTTTATAAAATATTGAACTTACCTTGACACGCATCAGCAAACCACTCGTGCACTCGACCT
CAATGTCGCGTGTTCGAACCTCACATGATGCAAAAGTTATTCGAAATTTTTCAGATCCATTCGCGTGCATTTCTTCCACCTCTCGTCATTCACCACGTTTCAACC
AGCCATCCATTCGTTCGCCTGTCCTGGCTTTGAATCTCCCATCCTGCAAAAGAATCTTTATATAAAATTGATGGCAAAATAATAAAGAAACCGTAAAAACTCAAA
AAGTTCTGTCTGATTTCTGAGTGTGCGTTCTTGAAGTCATGGTTTCGAACCTTGGCGATAGTTATTTCCTAATCTTTTCTATAAATACCTTTCATTTTTTAAAAA
CTTTCCCCATTCTATCATTTTTCTCCAAGCAATTTTTTTATCCAATAGAGGAGTAATTAAATTTTGAGTTTTGATTTCAAGAAAGTAGCTATACATCAAAGTACT
ATCTTGGGTTCGACCCCTTCTTATTATACTACGGTAAATCACATCGAGTAGGAAAAAATATAAATAATTTTTAGGCGAAACGGTAAGAGCTCCATACCTTTCCAT
CTTCTTTAATTGCAAATTCTTAGCATAAAACGACCTTACTGAGCATAATTTTTTGCTACATATTTCGGTCCCTAACTAAGTCTAAGTCTAAACCACATGAATTAT
ATTTGCCTTGGCCAACCGTAGTGGACCTTGGTTAGATATCTCAATGGATCTTGTGTTGGGATTACCTCGATCTAAAGGAGGGAAGGATAGTATTTTTTTTTTTTT
TTTTTGTAGTTAATAGGTTTAGCAAAATGATTCACTTTATTGCATGTAATAAAACTAATAATGCTAAACATGCGGCCGACTTTTTCTTTAAGGAGGTAGTTAAAT
TGCATGCACGACATTGTTAATGATAGAGATGTGAAATTCTCAAGTCACTTTTGGAAAGTACATTGGGGAGAACTTAGTACTAAGTTAGTTTACTCCACTACGTGC
CATCCTCAAACTGATGGACAAACTCAGGTAGTCAATAGGACGACGATGACTATGCTTAGGGCTCTAATAGATAAAAATACCAAAACTTGGAAGGATTTTCTACCA
TTTATTGAGTTTGTATACAATAAGGTATTTCGTAGTGTGACTAAATGTTCATCGTTTGAGATTGTATATGGTTTTAATCCTTTAACACCTATTGACTCGTTCCTT
TGCCTTCTAATGAGGTGGTGAATTTTCAAGCTGATGTGAAGATCACTACCATTATATTCGAGAGCTCCATACGAAGGTTAAAGAAAGAATTGAGAAGCAAAATGC
CAAGGTAGCGGAGAAGGTGAACCAACATTGAAAGCTCATGATACTTATGGAGGGACATAGATTTTGCTTCACCTTTGAACGAAATGATTTCCATATCAATGATGT
TAAACCTAAAAGGTGATGGACCTTTTCAAGTGATAAAAAAAATCAATGACAATGCCTACCAAATTGATCTTAAAAGATAAATATGGTGTGAGTGCTACTTTTAAC
GTTTATAACTTAACTCCATTTTGATACTAATAACGAGCTTGATTCGAGGACGAACCCTTCAAAAGAGGAAGAAAATGCCGTCGTGTTGCCATCGAGACCAATCAC
ACATTTCAGAGCTAAGAAACTACAGTTAGCATTGAACTCTCACATTTAAGAGGAAATGCGCTCATTAGAAGATTCATGCAATAACAATTTATTAGAAGATTTATA
ATTGAAGTCAGTTGACACTACAGAATGAAAAAACCAATTAACCTTCGACATTGAGACTTCAAGACTACTTTACAAGGCATTGATTTGGATTTGAGGACGAATCCT
TCAAAAGAAGAGGATCATATGAATTGACCAAGCATCAAATTATTAATTCAATTTTATTTAATACTTGTGATGTAATTTTAATATTTTCCACTTTTATCCTTTTTA
ATGACATTTAAGTAGGGCTAATTTAGTCTTTTTACTATACATTAGGGTTTTGCTTGGTTTGGTTTTGGGTTTGAATTTGGATATATGGGGTAGTAGATTTGTCAT
TTTAGTAATTCTATCGCAAACCTATCTTGGTAGAATCAATAGGTTATACCCATTCTCATTCGCTTAATATTGAGTTTGTTGTGTGTCATTGAGGTTTTATAACTG
CGACTACGCTACGTGACAAGACATGAACCATTATCTTGC
Protein sequenceShow/hide protein sequence
MHDIVNDRDVKFSSHFWKVHWGELSTKLVYSTTCHPQTDGQTQVVNRTTMTMLRALIDKNTKTWKDFLPFIEFVYNKVFRSVTKCSSFEIVYGFNPLTPIDSFLC
LLMRW