CuGenDBv2

Gene ID	Cmc03g0067191
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr03:9800341..9800700
RNA-Seq Expression	Cmc03g0067191
Synteny	Cmc03g0067191
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033486.1 reverse transcriptase [Cucumis melo var. makuwa]

3.7e-52

85.71

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDIL+YSK EAEHEE+LH VLETLRANKLYAKFSKCEFWL++V+FLGH+VS++ VSVDPAKIE VT+W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        PRPSTVSE+ SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

KAA0036879.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.7e-52

89.08

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAPVVFMDLMNRVF++FLDTFVIVFIDDIL+YSK EAEHEEYL MVL+TLR NKLYAKFSKCEFWLKQVSFLGH+VSKD VSVDPAKIE VT W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
         RPSTVSEV SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

KAA0051719.1 pol protein [Cucumis melo var. makuwa]

6.3e-52

85.71

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDIL+YSK EAEHEE+LH VLETLRANKLYAKFSKCEFWL++V+FLGH+VS + VSVDPAKIE VT+W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        PRPSTVSE+ SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

KAA0063098.1 pol protein [Cucumis melo var. makuwa]

6.3e-52

85.71

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDIL+YSK EAEHEE+LH VLETLRANKLYAKFSKCEFWL++V+FLGH+VS + VSVDPAKIE VT+W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        PRPSTVSE+ SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

KAA0063793.1 pol protein [Cucumis melo var. makuwa]

6.3e-52

85.71

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDIL+YSK EAEHEE+LH VLETLRANKLYAKFSKCEFWL++V+FLGH+VS + VSVDPAKIE VT+W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        PRPSTVSE+ SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SU25 Reverse transcriptase

1.8e-52

85.71

Show/hide

Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDIL+YSK EAEHEE+LH VLETLRANKLYAKFSKCEFWL++V+FLGH+VS++ VSVDPAKIE VT+W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        PRPSTVSE+ SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

A0A5A7T673 Ty3-gypsy retrotransposon protein

8.0e-53

89.08

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAPVVFMDLMNRVF++FLDTFVIVFIDDIL+YSK EAEHEEYL MVL+TLR NKLYAKFSKCEFWLKQVSFLGH+VSKD VSVDPAKIE VT W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
         RPSTVSEV SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

A0A5A7UE01 Reverse transcriptase

3.1e-52

85.71

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDIL+YSK EAEHEE+LH VLETLRANKLYAKFSKCEFWL++V+FLGH+VS + VSVDPAKIE VT+W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        PRPSTVSE+ SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

A0A5A7V6R2 Reverse transcriptase

3.1e-52

85.71

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDIL+YSK EAEHEE+LH VLETLRANKLYAKFSKCEFWL++V+FLGH+VS + VSVDPAKIE VT+W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        PRPSTVSE+ SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

A0A5A7VBY3 Reverse transcriptase

3.1e-52

85.71

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDIL+YSK EAEHEE+LH VLETLRANKLYAKFSKCEFWL++V+FLGH+VS + VSVDPAKIE VT+W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        PRPSTVSE+ SFLGLAGYY
Subjt:  PRPSTVSEVHSFLGLAGYY

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.3e-20

39.5

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        M FGL NAP  F   MN + +  L+   +V++DDI+V+S +  EH + L +V E L    L  +  KCEF  ++ +FLGH+++ D +  +P KIE +  +
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        P P+   E+ +FLGL GYY
Subjt:  PRPSTVSEVHSFLGLAGYY

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.3e-20

38.66

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        M FGL NAP  F   MN + +  L+   +V++DDI+++S +  EH   + +V   L    L  +  KCEF  K+ +FLGHIV+ D +  +P K++ + S+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        P P+   E+ +FLGL GYY
Subjt:  PRPSTVSEVHSFLGLAGYY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.9e-15

36.97

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        M FGL NAP  F   M   F+D    FV V++DDIL++S++  EH ++L  VLE L+   L  K  KC+F  ++  FLG+ +    ++    K   +  +
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        P P TV +   FLG+  YY
Subjt:  PRPSTVSEVHSFLGLAGYY

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

8.9e-17

35.29

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        + FGL NAP +F  +++ + ++ +     V+IDDI+V+S+    H + L +VL +L    L     K  F   QV FLG+IV+ D +  DP K+  ++  
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        P P++V E+  FLG+  YY
Subjt:  PRPSTVSEVHSFLGLAGYY

Q99315 Transposon Ty3-G Gag-Pol polyprotein

2.9e-15

36.97

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW
        M FGL NAP  F   M   F+D    FV V++DDIL++S++  EH ++L  VLE L+   L  K  KC+F  ++  FLG+ +    ++    K   +  +
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSW

Query:  PRPSTVSEVHSFLGLAGYY
        P P TV +   FLG+  YY
Subjt:  PRPSTVSEVHSFLGLAGYY

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.8e-13

44.59

Show/hide

Query:  YLHMVLETLRANKLYAKFSKCEFWLKQVSFLG--HIVSKDDVSVDPAKIEVVTSWPRPSTVSEVHSFLGLAGYY
        +L MVL+    ++ YA   KC F   Q+++LG  HI+S + VS DPAK+E +  WP P   +E+  FLGL GYY
Subjt:  YLHMVLETLRANKLYAKFSKCEFWLKQVSFLG--HIVSKDDVSVDPAKIEVVTSWPRPSTVSEVHSFLGLAGYY

Sequences

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CDS sequence

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ATGTCCTTTGGATTAACAAATGCTCCAGTAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGATTTCTTAGACACTTTCGTTATTGTATTCATTGATGATATCTTGGT
GTATTCCAAGGCAGAGGCAGAGCATGAGGAATATTTACACATGGTTCTAGAGACCCTACGAGCCAATAAACTATATGCAAAGTTTTCAAAATGTGAGTTTTGGTTGAAGC
AGGTATCTTTTCTAGGCCATATAGTTTCTAAAGATGATGTTTCTGTGGATCCAGCTAAGATAGAAGTTGTTACCAGTTGGCCTCGACCTTCTACAGTCAGTGAAGTTCAT
AGCTTTTTGGGTTTAGCAGGCTATTACTAA

mRNA sequence

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Protein sequence

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MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILVYSKAEAEHEEYLHMVLETLRANKLYAKFSKCEFWLKQVSFLGHIVSKDDVSVDPAKIEVVTSWPRPSTVSEVH
SFLGLAGYY

Cmc03g0067191 (gene) of Melon (Charmono) v1.1 genome