CuGenDBv2

Gene ID	Cmc03g0067341
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr03:10080235..10081116
RNA-Seq Expression	Cmc03g0067341
Synteny	Cmc03g0067341
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

1.5e-163

96.93

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

KAA0040699.1 pol protein [Cucumis melo var. makuwa]

9.7e-163

96.59

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMG+RLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFEVGDKVFLKVAPMRGVLRFERR KLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFH+SMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

KAA0043401.1 pol protein [Cucumis melo var. makuwa]

9.7e-163

95.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFH+SMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

2.0e-163

96.59

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

1.5e-163

96.93

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7THF3 Reverse transcriptase

4.7e-163

96.59

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMG+RLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFEVGDKVFLKVAPMRGVLRFERR KLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFH+SMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

A0A5A7TPA9 Pol protein

4.7e-163

95.9

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFH+SMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

A0A5A7U7V9 Reverse transcriptase

9.5e-164

96.59

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

A0A5A7VJE2 Reverse transcriptase

7.3e-164

96.93

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

Q84KB0 Pol protein

7.3e-164

96.93

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP+SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEF YNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL+GP+LVQSTNEAIQK RSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPD SHVVDYEPLEIDENLS
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.5e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + T  + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     +  Q T +  Q  +  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein

3.5e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + T  + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     +  Q T +  Q  +  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein

3.5e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + T  + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     +  Q T +  Q  +  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein

3.5e-38

34.42

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + T  + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     +  Q T +  Q  +  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein

3.5e-38

34.42

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + T  + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     +  Q T +  Q  +  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

Arabidopsis top hits

e value

%identity

Alignment

AT1G42190.1 GAG/POL/ENV polyprotein

9.8e-04

44.19

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Query:  YRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENL
        Y+L LP  +   H VFHVSMLRK +  Q +V+   P ++ EN+
Subjt:  YRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATTTCATTACAGGACTTCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTA
TACTACTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGATTACACGGAGTGCCATTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGA
AGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGG
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTACTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCCTTTGAGGCCTT
GTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATAGGTCCTAAGTTAGTTCAGTCTACTAATGAAGCGATACAGAAGACTAGAT
CACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGA
GGTGTTTTACGATTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCACCATC
ACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAGTACGTGCCAGATCAATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCT
AA

mRNA sequence

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Protein sequence

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MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPLSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLR
ACALEFPGSWDSHLHLMEFTYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLIGPKLVQSTNEAIQKTRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMR
GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDQSHVVDYEPLEIDENLS

Cmc03g0067341 (gene) of Melon (Charmono) v1.1 genome