; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0067501 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0067501
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:10426276..10427106
RNA-Seq ExpressionCmc03g0067501
SyntenyCmc03g0067501
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-14292.03Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PL SSENSGETVPKEIMRVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQ+KKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-14292.03Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PL SSENSGETVPKEIMRVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQ+KKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-14292.03Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PL SSENSGETVPKEIMRVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQ+KKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-14292.03Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PL SSENSGETVPKEIMRVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQ+KKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-14392.39Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PLNSSENSGETVPKEI+RVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQKKKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase1.1e-14292.03Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PL SSENSGETVPKEIMRVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQ+KKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

A0A5A7UXR6 Reverse transcriptase1.1e-14292.03Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PL SSENSGETVPKEIMRVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQ+KKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

A0A5D3BRZ6 Reverse transcriptase1.1e-14292.03Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PL SSENSGETVPKEIMRVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQ+KKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

A0A5D3C4R1 Reverse transcriptase1.1e-14292.03Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PL SSENSGETVPKEIMRVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQ+KKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

A0A5D3C9P8 Reverse transcriptase3.0e-14392.39Show/hide
Query:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA
        MPL KCLVITG TPS VQTDLRQP GLKMISAMQLKKGLSRDEPTFMA PLNSSENSGETVPKEI+RVLEKY DVM +SLPKSLPPRRMIDHEIELV GA
Subjt:  MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGA

Query:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV
        KPPAKNAYRMAP ELAELRK+LDELLNAGFIRP KAPYGA +LFQKKKDGSLRLCI+YRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDL SGYYQV
Subjt:  KPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQV

Query:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF
        RIAEGD+PK TCVTRYGAFEFL+MPFGLTNAPATFCTLMNQVFHEYLDKFVV+YLDDIVVYSTTMEEHRDHLQKVF
Subjt:  RIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.4e-3333.18Show/hide
Query:  EIMRVLEKYHDVMLNSLPKSLP-PRRMIDHEIELVL-GAKPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRAL
        E+  + +++ D+   +  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR  KA     ++F  KK+G+LR+ ++Y+ L
Subjt:  EIMRVLEKYHDVMLNSLPKSLP-PRRMIDHEIELVL-GAKPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRAL

Query:  NKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVY
        NK    N YPLP+I  L  ++ G+  F+KLDL S Y+ +R+ +GD+ K+      G FE+L+MP+G++ APA F   +N +  E  +  VV Y+DDI+++
Subjt:  NKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVY

Query:  STTMEEHRDHLQKV
        S +  EH  H++ V
Subjt:  STTMEEHRDHLQKV

P0CT41 Transposon Tf2-12 polyprotein2.4e-3333.18Show/hide
Query:  EIMRVLEKYHDVMLNSLPKSLP-PRRMIDHEIELVL-GAKPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRAL
        E+  + +++ D+   +  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR  KA     ++F  KK+G+LR+ ++Y+ L
Subjt:  EIMRVLEKYHDVMLNSLPKSLP-PRRMIDHEIELVL-GAKPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRAL

Query:  NKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVY
        NK    N YPLP+I  L  ++ G+  F+KLDL S Y+ +R+ +GD+ K+      G FE+L+MP+G++ APA F   +N +  E  +  VV Y+DDI+++
Subjt:  NKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVY

Query:  STTMEEHRDHLQKV
        S +  EH  H++ V
Subjt:  STTMEEHRDHLQKV

P31843 RNA-directed DNA polymerase homolog2.8e-4567.19Show/hide
Query:  SLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKF
        SLR+CI+YRAL K+T++NKYP+P + DLFDRL  A +F+KLDL SGY+QVRIA+GD+PK TCVTRYG+FEF +MPFGLTNA ATFC LMN V +EYLD F
Subjt:  SLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKF

Query:  VVLYLDDIVV---YSTTMEEHRDHLQKV
        VV+YLDD+VV   YS ++ EH  HL+ V
Subjt:  VVLYLDDIVV---YSTTMEEHRDHLQKV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.1e-3838.68Show/hide
Query:  EKYHDVMLNSLP------KSLPPRRMIDHEIELVLGAKPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNK
        +KY +++ N LP       ++P    + H+IE+  GA+ P    Y +      E+ K + +LL+  FI P K+P  + ++   KKDG+ RLC++YR LNK
Subjt:  EKYHDVMLNSLP------KSLPPRRMIDHEIELVLGAKPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNK

Query:  LTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYST
         T+ + +PLP I +L  R+  A+ F+ LDL SGY+Q+ +   D+ K   VT  G +E+ +MPFGL NAP+TF   M   F +   +FV +YLDDI+++S 
Subjt:  LTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYST

Query:  TMEEHRDHLQKV
        + EEH  HL  V
Subjt:  TMEEHRDHLQKV

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.1e-3838.68Show/hide
Query:  EKYHDVMLNSLP------KSLPPRRMIDHEIELVLGAKPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNK
        +KY +++ N LP       ++P    + H+IE+  GA+ P    Y +      E+ K + +LL+  FI P K+P  + ++   KKDG+ RLC++YR LNK
Subjt:  EKYHDVMLNSLP------KSLPPRRMIDHEIELVLGAKPPAKNAYRMAPSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNK

Query:  LTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYST
         T+ + +PLP I +L  R+  A+ F+ LDL SGY+Q+ +   D+ K   VT  G +E+ +MPFGL NAP+TF   M   F +   +FV +YLDDI+++S 
Subjt:  LTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFEFLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYST

Query:  TMEEHRDHLQKV
        + EEH  HL  V
Subjt:  TMEEHRDHLQKV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTGACCAAATGCTTGGTGATCACTGGATCTACCCCCTCGGCTGTACAGACTGACCTACGTCAGCCATATGGGTTGAAAATGATCTCGGCCATGCAATTAAAGAA
GGGTCTCTCTCGAGACGAACCAACGTTTATGGCCAGCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATTATGCGCGTGCTAGAGAAGTACCATG
ATGTGATGCTCAATAGTTTGCCCAAGTCTTTGCCACCTCGAAGAATGATTGATCATGAGATCGAGTTGGTGCTAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATG
GCGCCTTCGGAGTTAGCTGAACTTCGGAAAAAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGTAAAAGCTCCGTATGGGGCATCAATTCTTTTCCAGAAGAA
GAAAGATGGGAGTTTACGATTGTGCATTAATTATCGTGCCCTGAATAAGCTCACGGTTCGCAATAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATG
GGGCGAAGTATTTTTCAAAGTTAGACTTAGGATCAGGATACTACCAAGTGAGAATTGCAGAGGGAGATAAGCCGAAGATAACCTGTGTCACCCGATATGGTGCGTTCGAA
TTCCTCATAATGCCATTTGGTCTGACCAATGCCCCTGCAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTCGTAGTACTCTACCTAGATGA
TATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTGACCAAATGCTTGGTGATCACTGGATCTACCCCCTCGGCTGTACAGACTGACCTACGTCAGCCATATGGGTTGAAAATGATCTCGGCCATGCAATTAAAGAA
GGGTCTCTCTCGAGACGAACCAACGTTTATGGCCAGCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATTATGCGCGTGCTAGAGAAGTACCATG
ATGTGATGCTCAATAGTTTGCCCAAGTCTTTGCCACCTCGAAGAATGATTGATCATGAGATCGAGTTGGTGCTAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATG
GCGCCTTCGGAGTTAGCTGAACTTCGGAAAAAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGTAAAAGCTCCGTATGGGGCATCAATTCTTTTCCAGAAGAA
GAAAGATGGGAGTTTACGATTGTGCATTAATTATCGTGCCCTGAATAAGCTCACGGTTCGCAATAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATG
GGGCGAAGTATTTTTCAAAGTTAGACTTAGGATCAGGATACTACCAAGTGAGAATTGCAGAGGGAGATAAGCCGAAGATAACCTGTGTCACCCGATATGGTGCGTTCGAA
TTCCTCATAATGCCATTTGGTCTGACCAATGCCCCTGCAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTCGTAGTACTCTACCTAGATGA
TATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTTAG
Protein sequenceShow/hide protein sequence
MPLTKCLVITGSTPSAVQTDLRQPYGLKMISAMQLKKGLSRDEPTFMASPLNSSENSGETVPKEIMRVLEKYHDVMLNSLPKSLPPRRMIDHEIELVLGAKPPAKNAYRM
APSELAELRKKLDELLNAGFIRPVKAPYGASILFQKKKDGSLRLCINYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLGSGYYQVRIAEGDKPKITCVTRYGAFE
FLIMPFGLTNAPATFCTLMNQVFHEYLDKFVVLYLDDIVVYSTTMEEHRDHLQKVF