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Cmc03g0067531 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0067531
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPHD finger protein ALFIN-LIKE 3-like
Genome locationCMiso1.1chr03:10449339..10459443
RNA-Seq ExpressionCmc03g0067531
SyntenyCmc03g0067531
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0035064 - methylated histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011011 - Zinc finger, FYVE/PHD-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036625.1 PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo var. makuwa]4.6e-2484.85Show/hide
Query:  FEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFVV
        F R+AE QGMYAR+SQAREEVETL EEDED+H DTLCG CDENYA DEFWICCDICEKWFH KFVV
Subjt:  FEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFVV

XP_004141692.1 PHD finger protein ALFIN-LIKE 3 [Cucumis sativus]1.2e-2486.76Show/hide
Query:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        S F  REAE QGMYARQSQAREEVETL EEDEDEHGDTLCG C ENYASDEFWICCDICEKWFH K V
Subjt:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

XP_008462330.1 PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo]1.6e-2487.69Show/hide
Query:  FEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        F+REA+ QGMYARQSQAREEVETL EEDEDEHGDTLCG C ENYASDEFWICCDICEKWFH K V
Subjt:  FEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

XP_008462331.1 PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo]2.7e-2485.29Show/hide
Query:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        S F  REA+ QGMYARQSQAREEVETL EEDEDEHGDTLCG C ENYASDEFWICCDICEKWFH K V
Subjt:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

XP_038897957.1 PHD finger protein ALFIN-LIKE 3-like [Benincasa hispida]6.0e-2485.29Show/hide
Query:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        S F  REAE QGMYARQ QAREEVETL EEDEDEHGDTLCG C ENYASDEFWICCDICEKWFH K V
Subjt:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

TrEMBL top hitse value%identityAlignment
A0A0A0K9L1 PHD-type domain-containing protein5.8e-2586.76Show/hide
Query:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        S F  REAE QGMYARQSQAREEVETL EEDEDEHGDTLCG C ENYASDEFWICCDICEKWFH K V
Subjt:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

A0A1S3CGR0 PHD finger protein ALFIN-LIKE 3-like isoform X21.3e-2485.29Show/hide
Query:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        S F  REA+ QGMYARQSQAREEVETL EEDEDEHGDTLCG C ENYASDEFWICCDICEKWFH K V
Subjt:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

A0A1S3CI87 PHD finger protein ALFIN-LIKE 3-like isoform X17.6e-2587.69Show/hide
Query:  FEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        F+REA+ QGMYARQSQAREEVETL EEDEDEHGDTLCG C ENYASDEFWICCDICEKWFH K V
Subjt:  FEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

A0A5D3BW61 PHD finger protein ALFIN-LIKE 3-like isoform X12.2e-2484.85Show/hide
Query:  FEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFVV
        F R+AE QGMYAR+SQAREEVETL EEDED+H DTLCG CDENYA DEFWICCDICEKWFH KFVV
Subjt:  FEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFVV

A0A5D3BXQ0 PHD finger protein ALFIN-LIKE 3-like isoform X21.3e-2485.29Show/hide
Query:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        S F  REA+ QGMYARQSQAREEVETL EEDEDEHGDTLCG C ENYASDEFWICCDICEKWFH K V
Subjt:  SIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

SwissProt top hitse value%identityAlignment
B8B8C5 PHD finger protein ALFIN-LIKE 91.9e-1275.68Show/hide
Query:  EDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        E+EHG+TLCG C E+Y +DEFWICCDICEKWFH K V
Subjt:  EDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

O81488 PHD finger protein ALFIN-LIKE 41.4e-1250.75Show/hide
Query:  EREAEKQGMYAR---QSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        +R +E +  +++   +    EE E + EEDEDE G+T CG C E+YA+DEFWICCD+CE WFH K V
Subjt:  EREAEKQGMYAR---QSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

Q5XEM9 PHD finger protein ALFIN-LIKE 52.0e-1451.39Show/hide
Query:  EELSSIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        E  SS     + E++G+   + +  E      +EDEDEHG+TLCG C +NYASDEFWICCD+CEKWFH + V
Subjt:  EELSSIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

Q6YTY3 PHD finger protein ALFIN-LIKE 91.9e-1275.68Show/hide
Query:  EDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        E+EHG+TLCG C E+Y +DEFWICCDICEKWFH K V
Subjt:  EDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

Q9M2B4 PHD finger protein ALFIN-LIKE 32.6e-1455.17Show/hide
Query:  QGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        +G  ++  Q +EE E + E+DED+HG+TLCG C ++  +DEFWICCD+CEKWFH K V
Subjt:  QGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

Arabidopsis top hitse value%identityAlignment
AT3G42790.1 alfin-like 31.9e-1555.17Show/hide
Query:  QGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        +G  ++  Q +EE E + E+DED+HG+TLCG C ++  +DEFWICCD+CEKWFH K V
Subjt:  QGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

AT5G05610.1 alfin-like 12.3e-1347.62Show/hide
Query:  REAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        R   K+ +  +     + +E   E+++DEHGDTLCG C  NY +DEFWICCD+CE+W+H K V
Subjt:  REAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

AT5G05610.2 alfin-like 12.3e-1347.62Show/hide
Query:  REAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        R   K+ +  +     + +E   E+++DEHGDTLCG C  NY +DEFWICCD+CE+W+H K V
Subjt:  REAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

AT5G20510.1 alfin-like 51.4e-1551.39Show/hide
Query:  EELSSIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        E  SS     + E++G+   + +  E      +EDEDEHG+TLCG C +NYASDEFWICCD+CEKWFH + V
Subjt:  EELSSIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV

AT5G26210.1 alfin-like 41.0e-1350.75Show/hide
Query:  EREAEKQGMYAR---QSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV
        +R +E +  +++   +    EE E + EEDEDE G+T CG C E+YA+DEFWICCD+CE WFH K V
Subjt:  EREAEKQGMYAR---QSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGAGGAGTTATCAAGCATTTTCTTCGAGAGAGAAGCTGAAAAGCAAGGAATGTACGCAAGGCAGTCACAGGCAAGGGAAGAGGTAGAGACGTTGTGTGAAGAAGA
TGAAGACGAGCACGGTGACACCTTATGTGGGGTATGCGATGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCACGAAAAATTTG
TTGTATGA
mRNA sequenceShow/hide mRNA sequence
TGTGGAAGAGATTCAAAATGTGGAAGAGCTTACGACAAATAGCAAGTGTGGAAGTGCTTAAACGTTCTAAACCTTATTGAAAATGTTTAGCAAAATAGCTTTCGTGGAAG
AGGATCACCGAAAAAGCATCTTCAAAAACTTCAAACCCTTCTTACAGATGTCTTCTCCGGCGAAAGAGCTTTAGAAAAAGAGCATCCCCAAATTTACAGTCTTCTTCTTC
AATGAAAGAGCATCAGTTGTCGCTTCAGCGGAAGAGCTTCAAAACTTCCGAAACTTGTAACCAATCTTCAAAACCTTCAATGAAAGAGCATGAGCAGTGTCTGCAAAAAA
ATCTTCATCAAAAAGTGTCCAGCTTCACCTCTATATAAACAAGCAATTCCTCGGTTCCATCATCTTCTTCATATTCAACTTTCTGATCACGGACGTTTCTGCAACTATTG
GCAACTGTATTTTGATCACTGACGACAAGCATTTCTTCCTAATCAATAATAAGCATGTTAGAATGAAGGAAAAGCTAGGGAAATCTGGATAAGGCAGTTGAGCATGGTGA
ATTATCCAAACCACTTATTTAGGCCTTGATACATTTTGAGGCAATTCAGTCTACGGCAAAGAGAATTGATTATTTAGATTCATTAGTTGAAAAGGTCATAGTGCCCAACA
CAGAGAAAGCAACGGTCGTGAGTGCTTCAATGAGGGAGGAGTTATCAAGCATTTTCTTCGAGAGAGAAGCTGAAAAGCAAGGAATGTACGCAAGGCAGTCACAGGCAAGG
GAAGAGGTAGAGACGTTGTGTGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGTATGCGATGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATAT
TTGTGAGAAATGGTTCCACGAAAAATTTGTTGTATGAAGAAATGCTTCAGTTTATCAGTTTTCTTGTGATGTATTGAGCTTTCTAAAACAGGGTAGTTGGTTTTTGTTTA
GGTTTGTTCTTAAAGGATTTTTTTCCTTTATAAACAAAATTGTAAT
Protein sequenceShow/hide protein sequence
MREELSSIFFEREAEKQGMYARQSQAREEVETLCEEDEDEHGDTLCGVCDENYASDEFWICCDICEKWFHEKFVV