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Cmc03g0067721 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0067721
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationCMiso1.1chr03:10793678..10794848
RNA-Seq ExpressionCmc03g0067721
SyntenyCmc03g0067721
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038343.1 uncharacterized protein E6C27_scaffold270G002190 [Cucumis melo var. makuwa]1.5e-0562.22Show/hide
Query:  DDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG
        DDSDSS++D+LLN+HQ+PQR +   P+ QEDQEI MKVDL   +G
Subjt:  DDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG

KAA0045133.1 hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa]9.5e-2962.93Show/hide
Query:  MQQSIVDLTNLITRIHEQPIKEVAPIQPPRNQATENQEQLNQQEVPRNEAAANQERPRNQVIHVHNNQLYGNNLPGHMMDDSDSSNQDDLLNVHQDPQRR
        MQQSIVDLTNL TRIH QP+ E   IQPPRNQ                 AAANQE PR+Q +H+HNNQLYGNNL G+++DDS+SS++D+LLN+HQ+PQRR
Subjt:  MQQSIVDLTNLITRIHEQPIKEVAPIQPPRNQATENQEQLNQQEVPRNEAAANQERPRNQVIHVHNNQLYGNNLPGHMMDDSDSSNQDDLLNVHQDPQRR

Query:  LGFLPFNQEDQEIRMK
        L F P+ QEDQEIRMK
Subjt:  LGFLPFNQEDQEIRMK

KAA0058889.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.2e-0973.33Show/hide
Query:  DDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG
        D+SDSS++D+LLN+HQ+PQR L FLP+NQEDQEIRMKVDL   NG
Subjt:  DDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]2.3e-1962.92Show/hide
Query:  NQEQLNQQEVPRNEAAANQERPRNQVIHVHNNQLYGNNLPGHMMDDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG
        NQE   +QE P N +  NQE  RNQ IH+HNN+LYGNN+PG+ + DSDSS++D+LLN+HQ+PQ+RLG  P+ QEDQEIRMKVDL   NG
Subjt:  NQEQLNQQEVPRNEAAANQERPRNQVIHVHNNQLYGNNLPGHMMDDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG

TrEMBL top hitse value%identityAlignment
A0A5D3BB35 CCHC-type domain-containing protein7.2e-0662.22Show/hide
Query:  DDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG
        DDSDSS++D+LLN+HQ+PQR +   P+ QEDQEI MKVDL   +G
Subjt:  DDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG

A0A5D3DIZ0 Uncharacterized protein4.6e-2962.93Show/hide
Query:  MQQSIVDLTNLITRIHEQPIKEVAPIQPPRNQATENQEQLNQQEVPRNEAAANQERPRNQVIHVHNNQLYGNNLPGHMMDDSDSSNQDDLLNVHQDPQRR
        MQQSIVDLTNL TRIH QP+ E   IQPPRNQ                 AAANQE PR+Q +H+HNNQLYGNNL G+++DDS+SS++D+LLN+HQ+PQRR
Subjt:  MQQSIVDLTNLITRIHEQPIKEVAPIQPPRNQATENQEQLNQQEVPRNEAAANQERPRNQVIHVHNNQLYGNNLPGHMMDDSDSSNQDDLLNVHQDPQRR

Query:  LGFLPFNQEDQEIRMK
        L F P+ QEDQEIRMK
Subjt:  LGFLPFNQEDQEIRMK

A0A5D3DJC1 Transposon Ty3-G Gag-Pol polyprotein1.1e-0973.33Show/hide
Query:  DDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG
        D+SDSS++D+LLN+HQ+PQR L FLP+NQEDQEIRMKVDL   NG
Subjt:  DDSDSSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCAGAAGCCTTCGTAAACAGACACTTGCAGTTGGTGGAACAAGCCATTAAAGAACTCCGAAAGGGACAAGTGGATATGCAACAATCAATAGTCGATCTGACAAA
TCTCATCACTCGAATTCATGAGCAACCCATCAAAGAAGTCGCACCAATTCAACCTCCAAGAAACCAAGCTACAGAAAATCAAGAACAGTTGAATCAACAAGAAGTACCAA
GAAACGAAGCTGCAGCAAATCAAGAACGGCCAAGAAACCAAGTTATACACGTCCACAACAATCAACTCTATGGGAACAACCTTCCAGGGCACATGATGGATGATTCTGAC
TCTTCCAATCAAGACGATCTATTGAATGTTCATCAAGATCCGCAAAGAAGACTGGGTTTTCTACCATTCAATCAAGAAGATCAAGAAATAAGAATGAAGGTGGATCTTCT
TGCACTCAACGGCTGA
mRNA sequenceShow/hide mRNA sequence
AAAACACTCTCCATGTTTTGCATCAATTGGTATCAGAGAGCTCGATCCTAGCTCACTTCCTTCCTAAACTCAGATCTTCGCCATTCCCAACCATGGACGCAGAAGCCTTC
GTAAACAGACACTTGCAGTTGGTGGAACAAGCCATTAAAGAACTCCGAAAGGGACAAGTGGATATGCAACAATCAATAGTCGATCTGACAAATCTCATCACTCGAATTCA
TGAGCAACCCATCAAAGAAGTCGCACCAATTCAACCTCCAAGAAACCAAGCTACAGAAAATCAAGAACAGTTGAATCAACAAGAAGTACCAAGAAACGAAGCTGCAGCAA
ATCAAGAACGGCCAAGAAACCAAGTTATACACGTCCACAACAATCAACTCTATGGGAACAACCTTCCAGGGCACATGATGGATGATTCTGACTCTTCCAATCAAGACGAT
CTATTGAATGTTCATCAAGATCCGCAAAGAAGACTGGGTTTTCTACCATTCAATCAAGAAGATCAAGAAATAAGAATGAAGGTGGATCTTCTTGCACTCAACGGCTGAAT
GGACATTGAAAAATTTCTTGATTGGATCAAGAATGTAGAGATCTTTTTTGACTAGGCTAATACTCCATAATACAAGATGGTCCAGTCGGTGGCTTTCAATCTCCAAGGTA
GCAGTAGTGCACGGTGGGATCAACTCCAAAATTATCAGATACTATTTCTTTGGCGTCCAAGATGGAAGAGAGTGATGAGATCAAGAAAACGAAGACTTAACAACAAAGGA
GCAATTTGGATAAACAGCAACAAAAGACGAATCTCACTGACTCGTTTAGAAATTTTCAACAAGGGAGCTCATTCACATCTTCACGGCCCATCAAGAAGGATGACATTCCA
CTCAAAAACCTA
Protein sequenceShow/hide protein sequence
MDAEAFVNRHLQLVEQAIKELRKGQVDMQQSIVDLTNLITRIHEQPIKEVAPIQPPRNQATENQEQLNQQEVPRNEAAANQERPRNQVIHVHNNQLYGNNLPGHMMDDSD
SSNQDDLLNVHQDPQRRLGFLPFNQEDQEIRMKVDLLALNG