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Cmc03g0068151 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0068151
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationCMiso1.1chr03:11714494..11714820
RNA-Seq ExpressionCmc03g0068151
SyntenyCmc03g0068151
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004601 - peroxidase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033060.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]1.0e-48100Show/hide
Query:  MSCMQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFE
        MSCMQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFE
Subjt:  MSCMQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFE

KAA0043595.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.1e-3877.45Show/hide
Query:  EKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPV
        +K CSFAKSRVEYLGHVISR GVEVDP+KI+ I EWP PTNV+EV GF GLTGYYRRFVHQYGS+AAPLTQLLK G FKW  E EEAF +LK A M+LP+
Subjt:  EKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPV

Query:  LA
        LA
Subjt:  LA

KAA0054134.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.1e-3875.49Show/hide
Query:  EKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPV
        +K C+FAKSRVEYLGH+I  +GVEVDP KI+ IA+WPKPTNVRE  GF GLTGYYRRFVH+YG+I APLTQLLKK GFKW++EA+E FE+LKKA MSLP+
Subjt:  EKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPV

Query:  LA
        LA
Subjt:  LA

KAA0054144.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-3882.18Show/hide
Query:  KNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVL
        K  SF+ SRVEYLGHVIS DGVEVDP+KI+ I EWPKPTNVREV GF GLTGYY RFVHQYGSIA+ LTQLLKKGG KWNKEAEE FE+LKKA MSLPVL
Subjt:  KNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVL

Query:  A
        A
Subjt:  A

TYK28980.1 T32E20.30 [Cucumis melo var. makuwa]5.6e-3982.65Show/hide
Query:  SFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVLA
        +FA+S++EYL HVISR+GVEVD + IK IA+WPKPTN+REV GF GLTGYYRRFV QYGSIAAPLTQLLKKGGFKWN+EAEEAFERLKKA MSLPVLA
Subjt:  SFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVLA

TrEMBL top hitse value%identityAlignment
A0A5A7TSP5 Transposon Tf2-9 polyprotein1.0e-3875.25Show/hide
Query:  KNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVL
        K CSF K+RVEYLGH+IS +G EVDP+KI+ IA+WPKPTN+RE  GF GLT YYRRFVHQYG+IAAPLT LLKKGGFKW+KEA+EAF++LK+A MSLP+L
Subjt:  KNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVL

Query:  A
        A
Subjt:  A

A0A5A7UG09 Transposon Ty3-I Gag-Pol polyprotein1.0e-3875.49Show/hide
Query:  EKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPV
        +K C+FAKSRVEYLGH+I  +GVEVDP KI+ IA+WPKPTNVRE  GF GLTGYYRRFVH+YG+I APLTQLLKK GFKW++EA+E FE+LKKA MSLP+
Subjt:  EKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPV

Query:  LA
        LA
Subjt:  LA

A0A5A7UG44 Reverse transcriptase6.0e-3982.18Show/hide
Query:  KNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVL
        K  SF+ SRVEYLGHVIS DGVEVDP+KI+ I EWPKPTNVREV GF GLTGYY RFVHQYGSIA+ LTQLLKKGG KWNKEAEE FE+LKKA MSLPVL
Subjt:  KNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVL

Query:  A
        A
Subjt:  A

A0A5D3BWG8 Transposon Tf2-1 polyprotein isoform X14.9e-49100Show/hide
Query:  MSCMQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFE
        MSCMQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFE
Subjt:  MSCMQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFE

A0A5D3E0E2 T32E20.302.7e-3982.65Show/hide
Query:  SFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVLA
        +FA+S++EYL HVISR+GVEVD + IK IA+WPKPTN+REV GF GLTGYYRRFV QYGSIAAPLTQLLKKGGFKWN+EAEEAFERLKKA MSLPVLA
Subjt:  SFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVLA

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.6e-1740.57Show/hide
Query:  MQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGG--FKWNKEAEEAFERLKKAT
        +Q++K C F K    +LGHV++ DG++ +P+KI+ I ++P PT  +E+  F GLTGYYR+F+  +  IA P+T+ LKK       N E + AF++LK   
Subjt:  MQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGG--FKWNKEAEEAFERLKKAT

Query:  MSLPVL
           P+L
Subjt:  MSLPVL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy9.9e-1536.28Show/hide
Query:  EKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLL------------KKGGFKWNKEAEEAF
        ++   F K  VEYLG ++S+DG + DP+K+K I E+P+P  V +V  F GL  YYR F+  + +IA P+T +L            KK   ++N+    AF
Subjt:  EKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLL------------KKGGFKWNKEAEEAF

Query:  ERLKKATMSLPVL
        +RL+    S  V+
Subjt:  ERLKKATMSLPVL

P20825 Retrovirus-related Pol polyprotein from transposon 2979.6e-1841.51Show/hide
Query:  MQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAE--EAFERLKKAT
        +Q++K C F K    +LGH+++ DG++ +P K+K I  +P PT  +E+  F GLTGYYR+F+  Y  IA P+T  LKK      ++ E  EAFE+LK   
Subjt:  MQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAE--EAFERLKKAT

Query:  MSLPVL
        +  P+L
Subjt:  MSLPVL

P92523 Uncharacterized mitochondrial protein AtMg008602.8e-2552.43Show/hide
Query:  KNCSFAKSRVEYLG--HVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLP
        K C+F + ++ YLG  H+IS +GV  DP K++ +  WP+P N  E+ GF GLTGYYRRFV  YG I  PLT+LLKK   KW + A  AF+ LK A  +LP
Subjt:  KNCSFAKSRVEYLG--HVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLP

Query:  VLA
        VLA
Subjt:  VLA

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.4e-1534.19Show/hide
Query:  MQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLK------------KGGFKWNKEAE
        + +EK+  F  ++VE+LG++++ DG++ DP+K++ I+E P PT+V+E+  F G+T YYR+F+  Y  +A PLT L +            K     ++ A 
Subjt:  MQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLK------------KGGFKWNKEAE

Query:  EAFERLKKATMSLPVLA
        ++F  LK    S  +LA
Subjt:  EAFERLKKATMSLPVLA

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.0e-2652.43Show/hide
Query:  KNCSFAKSRVEYLG--HVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLP
        K C+F + ++ YLG  H+IS +GV  DP K++ +  WP+P N  E+ GF GLTGYYRRFV  YG I  PLT+LLKK   KW + A  AF+ LK A  +LP
Subjt:  KNCSFAKSRVEYLG--HVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLP

Query:  VLA
        VLA
Subjt:  VLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTGTATGCAAATAGAAAAAAATTGCAGCTTTGCAAAGTCTCGAGTAGAGTATTTGGGGCACGTTATTTCTCGAGATGGAGTTGAGGTTGACCCTCAAAAAATCAA
GCCTATTGCTGAATGGCCTAAGCCAACTAATGTCAGGGAGGTAAGTGGATTCCCTGGGCTAACCGGATATTACAGAAGATTTGTGCATCAGTATGGCTCTATAGCGGCCC
CCCTAACTCAGCTGCTTAAGAAAGGAGGGTTTAAGTGGAATAAAGAAGCTGAAGAAGCATTTGAGAGGTTGAAGAAGGCAACGATGTCTCTTCCAGTTTTAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTGTATGCAAATAGAAAAAAATTGCAGCTTTGCAAAGTCTCGAGTAGAGTATTTGGGGCACGTTATTTCTCGAGATGGAGTTGAGGTTGACCCTCAAAAAATCAA
GCCTATTGCTGAATGGCCTAAGCCAACTAATGTCAGGGAGGTAAGTGGATTCCCTGGGCTAACCGGATATTACAGAAGATTTGTGCATCAGTATGGCTCTATAGCGGCCC
CCCTAACTCAGCTGCTTAAGAAAGGAGGGTTTAAGTGGAATAAAGAAGCTGAAGAAGCATTTGAGAGGTTGAAGAAGGCAACGATGTCTCTTCCAGTTTTAGCATAG
Protein sequenceShow/hide protein sequence
MSCMQIEKNCSFAKSRVEYLGHVISRDGVEVDPQKIKPIAEWPKPTNVREVSGFPGLTGYYRRFVHQYGSIAAPLTQLLKKGGFKWNKEAEEAFERLKKATMSLPVLA