; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0068721 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0068721
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:12878711..12879607
RNA-Seq ExpressionCmc03g0068721
SyntenyCmc03g0068721
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-16394.04Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMY+TLKKTYWW GMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIK TS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT    STSFHPQTDGQSERTIQTLE+MLRACVLQLKGS DTHLPLMEFAYNN+YQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG
        SIGMAPYEALY RPCRT VCWNEVGERKLVG E+VQITTNNIKLIREN+R AQDRQKSYADKRRRNLEF VGDQVFLKLSPWR VIRFGRKGKLSPRYIG
Subjt:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG

Query:  PY
        PY
Subjt:  PY

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-16394.04Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMY+TLKKTYWW GMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIK TS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT    STSFHPQTDGQSERTIQTLE+MLRACVLQLKGS DTHLPLMEFAYNN+YQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG
        SIGMAPYEALY RPCRT VCWNEVGERKLVG E+VQITTNNIKLIREN+R AQDRQKSYADKRRRNLEF VGDQVFLKLSPWR VIRFGRKGKLSPRYIG
Subjt:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG

Query:  PY
        PY
Subjt:  PY

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-16394.04Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMY+TLKKTYWW GMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIK TS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT    STSFHPQTDGQSERTIQTLE+MLRACVLQLKGS DTHLPLMEFAYNN+YQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG
        SIGMAPYEALY RPCRT VCWNEVGERKLVG E+VQITTNNIKLIREN+R AQDRQKSYADKRRRNLEF VGDQVFLKLSPWR VIRFGRKGKLSPRYIG
Subjt:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG

Query:  PY
        PY
Subjt:  PY

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-16394.04Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMY+TLKKTYWW GMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIK TS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT    STSFHPQTDGQSERTIQTLE+MLRACVLQLKGS DTHLPLMEFAYNN+YQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG
        SIGMAPYEALY RPCRT VCWNEVGERKLVG E+VQITTNNIKLIREN+R AQDRQKSYADKRRRNLEF VGDQVFLKLSPWR VIRFGRKGKLSPRYIG
Subjt:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG

Query:  PY
        PY
Subjt:  PY

KAA0063169.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.9e-167100Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSSIGM
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSSIGM
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSSIGM

Query:  APYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRK
        APYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRK
Subjt:  APYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRK

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase9.7e-16494.04Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMY+TLKKTYWW GMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIK TS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT    STSFHPQTDGQSERTIQTLE+MLRACVLQLKGS DTHLPLMEFAYNN+YQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG
        SIGMAPYEALY RPCRT VCWNEVGERKLVG E+VQITTNNIKLIREN+R AQDRQKSYADKRRRNLEF VGDQVFLKLSPWR VIRFGRKGKLSPRYIG
Subjt:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG

Query:  PY
        PY
Subjt:  PY

A0A5A7U2V7 Reverse transcriptase9.7e-16494.04Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMY+TLKKTYWW GMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIK TS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT    STSFHPQTDGQSERTIQTLE+MLRACVLQLKGS DTHLPLMEFAYNN+YQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG
        SIGMAPYEALY RPCRT VCWNEVGERKLVG E+VQITTNNIKLIREN+R AQDRQKSYADKRRRNLEF VGDQVFLKLSPWR VIRFGRKGKLSPRYIG
Subjt:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG

Query:  PY
        PY
Subjt:  PY

A0A5A7VC40 DNA/RNA polymerases superfamily protein1.9e-167100Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSSIGM
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSSIGM
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSSIGM

Query:  APYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRK
        APYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRK
Subjt:  APYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRK

A0A5D3BHI1 Reverse transcriptase9.7e-16494.04Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMY+TLKKTYWW GMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIK TS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT    STSFHPQTDGQSERTIQTLE+MLRACVLQLKGS DTHLPLMEFAYNN+YQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG
        SIGMAPYEALY RPCRT VCWNEVGERKLVG E+VQITTNNIKLIREN+R AQDRQKSYADKRRRNLEF VGDQVFLKLSPWR VIRFGRKGKLSPRYIG
Subjt:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG

Query:  PY
        PY
Subjt:  PY

A0A5D3BS67 Reverse transcriptase9.7e-16494.04Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        MHPGSTKMY+TLKKTYWW GMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIK TS
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT    STSFHPQTDGQSERTIQTLE+MLRACVLQLKGS DTHLPLMEFAYNN+YQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGT----STSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG
        SIGMAPYEALY RPCRT VCWNEVGERKLVG E+VQITTNNIKLIREN+R AQDRQKSYADKRRRNLEF VGDQVFLKLSPWR VIRFGRKGKLSPRYIG
Subjt:  SIGMAPYEALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIG

Query:  PY
        PY
Subjt:  PY

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.6e-3830.67Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        +HPG   +   + + + W G++++I EYV  C  CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +P   + 
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQK----AMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        T +Q AR++  ++++ +G P  I++D D  FTS+ W          M  S  + PQTDGQ+ERT QT+E +LR        +   H+ L++ +YNN+  S
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQK----AMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYE-----RPCRTLVCWNEVGERKLVGLEVVQ-----ITTNNIKLIRENMRIAQDRQKSYADKRRRNL-EFHVGDQVFLKLSPWRVVIRFG
        +  M P+E ++       P       ++  E     ++V Q     + TNNIK+            K Y D + + + EF  GD V +K +    +    
Subjt:  SIGMAPYEALYE-----RPCRTLVCWNEVGERKLVGLEVVQ-----ITTNNIKLIRENMRIAQDRQKSYADKRRRNL-EFHVGDQVFLKLSPWRVVIRFG

Query:  RKGKLSPRYIGPY
        +  KL+P + GP+
Subjt:  RKGKLSPRYIGPY

P0CT41 Transposon Tf2-12 polyprotein1.6e-3830.67Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        +HPG   +   + + + W G++++I EYV  C  CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +P   + 
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQK----AMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        T +Q AR++  ++++ +G P  I++D D  FTS+ W          M  S  + PQTDGQ+ERT QT+E +LR        +   H+ L++ +YNN+  S
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQK----AMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYE-----RPCRTLVCWNEVGERKLVGLEVVQ-----ITTNNIKLIRENMRIAQDRQKSYADKRRRNL-EFHVGDQVFLKLSPWRVVIRFG
        +  M P+E ++       P       ++  E     ++V Q     + TNNIK+            K Y D + + + EF  GD V +K +    +    
Subjt:  SIGMAPYEALYE-----RPCRTLVCWNEVGERKLVGLEVVQ-----ITTNNIKLIRENMRIAQDRQKSYADKRRRNL-EFHVGDQVFLKLSPWRVVIRFG

Query:  RKGKLSPRYIGPY
        +  KL+P + GP+
Subjt:  RKGKLSPRYIGPY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.9e-4033.99Show/hide
Query:  HPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATST
        H G T     +   Y+W  ++  I +Y+  C+ CQ +K  R R  G L PLP+ E +W  I+MDF+ GLP TS+  + I V+VDR +K   FI  + T  
Subjt:  HPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATST

Query:  LDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMG----TSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSS
          QL  L    I S +G P +I SDRD R T+  +  L K +G     S++ HPQTDGQSERTIQTL  +LRA V     +   +LP +EF YN++   +
Subjt:  LDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMG----TSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSS

Query:  IGMAPYE--ALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYI
        +G +P+E    Y      +   +EV  R    +E+ +         +E +  AQ   ++  ++RR+ L  ++GD V +    +    + G   K+   Y+
Subjt:  IGMAPYE--ALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYI

Query:  GPY
        GP+
Subjt:  GPY

Q99315 Transposon Ty3-G Gag-Pol polyprotein8.4e-4033.66Show/hide
Query:  HPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATST
        H G T     +   Y+W  ++  I +Y+  C+ CQ +K  R R  G L PLP+ E +W  I+MDF+ GLP TS+  + I V+VDR +K   FI  + T  
Subjt:  HPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATST

Query:  LDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMG----TSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSS
          QL  L    I S +G P +I SDRD R T+  +  L K +G     S++ HPQTDGQSERTIQTL  +LRA       +   +LP +EF YN++   +
Subjt:  LDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMG----TSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSS

Query:  IGMAPYE--ALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYI
        +G +P+E    Y      +   +EV  R    +E+ +         +E +  AQ   ++  ++RR+ L  ++GD V +    +    + G   K+   Y+
Subjt:  IGMAPYE--ALYERPCRTLVCWNEVGERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYI

Query:  GPY
        GP+
Subjt:  GPY

Q9UR07 Transposon Tf2-11 polyprotein1.6e-3830.67Show/hide
Query:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS
        +HPG   +   + + + W G++++I EYV  C  CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +P   + 
Subjt:  MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATS

Query:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQK----AMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS
        T +Q AR++  ++++ +G P  I++D D  FTS+ W          M  S  + PQTDGQ+ERT QT+E +LR        +   H+ L++ +YNN+  S
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQK----AMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQS

Query:  SIGMAPYEALYE-----RPCRTLVCWNEVGERKLVGLEVVQ-----ITTNNIKLIRENMRIAQDRQKSYADKRRRNL-EFHVGDQVFLKLSPWRVVIRFG
        +  M P+E ++       P       ++  E     ++V Q     + TNNIK+            K Y D + + + EF  GD V +K +    +    
Subjt:  SIGMAPYEALYE-----RPCRTLVCWNEVGERKLVGLEVVQ-----ITTNNIKLIRENMRIAQDRQKSYADKRRRNL-EFHVGDQVFLKLSPWRVVIRFG

Query:  RKGKLSPRYIGPY
        +  KL+P + GP+
Subjt:  RKGKLSPRYIGPY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCCAGGTAGCACCAAGATGTACAAAACTTTAAAGAAGACTTATTGGTGGTTTGGAATGAAGCAAGAGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACA
GGTTAAACCAGTAAGACAGAGGCCAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTCGTACAT
CCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGATTAAAGCGACATCTACATTAGACCAGCTAGCTAGATTATATGTT
GATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAAGTAC
ATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGAACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTCGGATACCCACTTGC
CACTTATGGAGTTTGCTTATAATAATAGCTATCAGTCTAGTATCGGTATGGCACCATATGAGGCCTTATACGAGAGACCATGCAGAACTCTTGTTTGCTGGAATGAAGTG
GGAGAGCGAAAGTTAGTTGGTCTTGAGGTAGTTCAGATTACGACTAACAATATTAAGTTGATCAGAGAAAATATGAGGATAGCCCAAGATCGACAGAAAAGTTATGCGGA
TAAGCGACGAAGAAACCTAGAATTCCATGTTGGAGATCAAGTTTTCCTGAAATTATCTCCATGGCGAGTCGTTATTCGTTTCGGAAGAAAAGGTAAGCTAAGTCCTAGAT
ATATTGGGCCATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCCAGGTAGCACCAAGATGTACAAAACTTTAAAGAAGACTTATTGGTGGTTTGGAATGAAGCAAGAGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACA
GGTTAAACCAGTAAGACAGAGGCCAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTCGTACAT
CCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGATTAAAGCGACATCTACATTAGACCAGCTAGCTAGATTATATGTT
GATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAAGTAC
ATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGAACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTCGGATACCCACTTGC
CACTTATGGAGTTTGCTTATAATAATAGCTATCAGTCTAGTATCGGTATGGCACCATATGAGGCCTTATACGAGAGACCATGCAGAACTCTTGTTTGCTGGAATGAAGTG
GGAGAGCGAAAGTTAGTTGGTCTTGAGGTAGTTCAGATTACGACTAACAATATTAAGTTGATCAGAGAAAATATGAGGATAGCCCAAGATCGACAGAAAAGTTATGCGGA
TAAGCGACGAAGAAACCTAGAATTCCATGTTGGAGATCAAGTTTTCCTGAAATTATCTCCATGGCGAGTCGTTATTCGTTTCGGAAGAAAAGGTAAGCTAAGTCCTAGAT
ATATTGGGCCATATTAG
Protein sequenceShow/hide protein sequence
MHPGSTKMYKTLKKTYWWFGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYV
DKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTSTSFHPQTDGQSERTIQTLENMLRACVLQLKGSSDTHLPLMEFAYNNSYQSSIGMAPYEALYERPCRTLVCWNEV
GERKLVGLEVVQITTNNIKLIRENMRIAQDRQKSYADKRRRNLEFHVGDQVFLKLSPWRVVIRFGRKGKLSPRYIGPY