CuGenDBv2

Gene ID	Cmc03g0068771
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr03:13036745..13037413
RNA-Seq Expression	Cmc03g0068771
Synteny	Cmc03g0068771
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-84

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Query:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG
        MLKSIRILLSIA FYDYEIW+MDVKT F N N EESIFMSQ E FITQ QEQKVCKLNRSIYGLKQASRSWNIRFDT I SYGFDQNV+EPCVYKKINKG
Subjt:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------
        KVAFL+LYVD++LLIGNDVGYLT++K WL AQ QMKDLGEAQYVLGIQIIRDRKNK L LSQATYI            KK     R              
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------

Query:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG
             +RR  Y S +GS      L++A+L TRPDICY VGIVSRYQSNPG
Subjt:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

5.2e-84

69.6

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Query:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG
        MLKSIRILLSIA FYDYEIW+MDVKT F N N EESIFMSQ E FITQ QEQKVCKLNRSIYGLKQASRSWNIRFDT I SYGFDQNV+EPCVYKKINKG
Subjt:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------
        KVAFL+LYVD++LLIGNDVGYLT++K WL AQ QMKDLGE QYVLGIQIIRDRKNK L LSQATYI            KK     R              
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------

Query:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG
             +RR  Y S +GS      L++A+L TRPDICY VGIVSRYQSNPG
Subjt:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-84

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Query:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG
        MLKSIRILLSIA FYDYEIW+MDVKT F N N EESIFMSQ E FITQ QEQKVCKLNRSIYGLKQASRSWNIRFDT I SYGFDQNV+EPCVYKKINKG
Subjt:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------
        KVAFL+LYVD++LLIGNDVGYLT++K WL AQ QMKDLGEAQYVLGIQIIRDRKNK L LSQATYI            KK     R              
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------

Query:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG
             +RR  Y S +GS      L++A+L TRPDICY VGIVSRYQSNPG
Subjt:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG

KAA0059556.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-83

69.08

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Query:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG
        MLKSIRILLSIA FYDYEIW+MDVKT F NDN EESIFMSQ E FITQ QEQKVCKLNRSIYGLKQASRSWNIRFDT I  YGFDQNV+EPCVYKKINKG
Subjt:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------
        KVAFL+LY+D++LLIGNDVGYLT++K WL AQ QMKD+GEAQYVLGIQIIRDRKNK L LSQATYI            KK     R              
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------

Query:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNP
             +RR  Y S +GS      L++A+L TRPDICY VGIVSRYQSNP
Subjt:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNP

KAA0062410.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-84

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Query:  KSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKV
        KSIRILLSI  FYDYEIW+MDVKT F N N EESIFMSQ + FITQ QEQKVCKLN+SIYGLKQASRSWNIRFDT I SYGFDQNV+EPCVYKKINKGKV
Subjt:  KSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKV

Query:  AFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLRRAYYLSGIGSTCLRNKLIHAILY
        AFL+LYVD++LLIGNDVGYLT++K WL AQ QMKDLGE QYVLGIQIIRDRKNKML LSQATYI K       +  ++A     +GS      L++A+L 
Subjt:  AFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLRRAYYLSGIGSTCLRNKLIHAILY

Query:  TRPDICYVVGIVSRYQSNPG
        TRPDICY VGIVSRYQSNPG
Subjt:  TRPDICYVVGIVSRYQSNPG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

2.5e-84

69.6

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Query:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG
        MLKSIRILLSIA FYDYEIW+MDVKT F N N EESIFMSQ E FITQ QEQKVCKLNRSIYGLKQASRSWNIRFDT I SYGFDQNV+EPCVYKKINKG
Subjt:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------
        KVAFL+LYVD++LLIGNDVGYLT++K WL AQ QMKDLGE QYVLGIQIIRDRKNK L LSQATYI            KK     R              
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------

Query:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG
             +RR  Y S +GS      L++A+L TRPDICY VGIVSRYQSNPG
Subjt:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG

A0A5A7TZD0 Gag/pol protein

5.1e-85

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Query:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG
        MLKSIRILLSIA FYDYEIW+MDVKT F N N EESIFMSQ E FITQ QEQKVCKLNRSIYGLKQASRSWNIRFDT I SYGFDQNV+EPCVYKKINKG
Subjt:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------
        KVAFL+LYVD++LLIGNDVGYLT++K WL AQ QMKDLGEAQYVLGIQIIRDRKNK L LSQATYI            KK     R              
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------

Query:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG
             +RR  Y S +GS      L++A+L TRPDICY VGIVSRYQSNPG
Subjt:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG

A0A5A7UYE8 Gag/pol protein

5.1e-85

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Query:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG
        MLKSIRILLSIA FYDYEIW+MDVKT F N N EESIFMSQ E FITQ QEQKVCKLNRSIYGLKQASRSWNIRFDT I SYGFDQNV+EPCVYKKINKG
Subjt:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------
        KVAFL+LYVD++LLIGNDVGYLT++K WL AQ QMKDLGEAQYVLGIQIIRDRKNK L LSQATYI            KK     R              
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------

Query:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG
             +RR  Y S +GS      L++A+L TRPDICY VGIVSRYQSNPG
Subjt:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG

A0A5A7UZF3 Gag/pol protein

9.6e-84

69.08

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Query:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG
        MLKSIRILLSIA FYDYEIW+MDVKT F NDN EESIFMSQ E FITQ QEQKVCKLNRSIYGLKQASRSWNIRFDT I  YGFDQNV+EPCVYKKINKG
Subjt:  MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------
        KVAFL+LY+D++LLIGNDVGYLT++K WL AQ QMKD+GEAQYVLGIQIIRDRKNK L LSQATYI            KK     R              
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYI------------KKCWFDIR--------------

Query:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNP
             +RR  Y S +GS      L++A+L TRPDICY VGIVSRYQSNP
Subjt:  --CRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNP

A0A5D3DS50 Gag/pol protein

1.9e-84

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Query:  KSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKV
        KSIRILLSI  FYDYEIW+MDVKT F N N EESIFMSQ + FITQ QEQKVCKLN+SIYGLKQASRSWNIRFDT I SYGFDQNV+EPCVYKKINKGKV
Subjt:  KSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKV

Query:  AFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLRRAYYLSGIGSTCLRNKLIHAILY
        AFL+LYVD++LLIGNDVGYLT++K WL AQ QMKDLGE QYVLGIQIIRDRKNKML LSQATYI K       +  ++A     +GS      L++A+L 
Subjt:  AFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLRRAYYLSGIGSTCLRNKLIHAILY

Query:  TRPDICYVVGIVSRYQSNPG
        TRPDICY VGIVSRYQSNPG
Subjt:  TRPDICYVVGIVSRYQSNPG

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

8.3e-24

31.49

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Query:  LKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVY--KKINK
        + S R +LS+ I Y+ ++ +MDVKT F N   +E I+M +  + I+ + +  VCKLN++IYGLKQA+R W   F+  +    F  +  + C+Y   K N 
Subjt:  LKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVY--KKINK

Query:  GKVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLRRA---------YYLSGIGST
         +  +++LYVD++++   D+  + N K +L+ + +M DL E ++ +GI+I  + +   + LSQ+ Y+KK                      Y L      
Subjt:  GKVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLRRA---------YYLSGIGST

Query:  C------LRNKLIHAILYTRPDICYVVGIVSRYQS
        C      L   L++ +L TRPD+   V I+SRY S
Subjt:  C------LRNKLIHAILYTRPDICYVVGIVSRYQS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.1e-39

37.6

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Query:  LKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVY-KKINKG
        + SIR +LS+A   D E+ ++DVKT F + + EE I+M Q E F    ++  VCKLN+S+YGLKQA R W ++FD+ + S  + +   +PCVY K+ ++ 
Subjt:  LKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVY-KKINKG

Query:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCW--FDIR-------------------CRT--
            L+LYVD+ML++G D G +  +K  L     MKDLG AQ +LG++I+R+R ++ L LSQ  YI++    F+++                   C T  
Subjt:  KVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCW--FDIR-------------------CRT--

Query:  -----LRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG
             + +  Y S +GS      L++A++ TRPDI + VG+VSR+  NPG
Subjt:  -----LRRAYYLSGIGSTCLRNKLIHAILYTRPDICYVVGIVSRYQSNPG

P25600 Putative transposon Ty5-1 protein YCL074W

7.7e-14

27.78

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Query:  MDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKVAFLILYVDNMLLIGNDVGY
        MDV T F N   +E I++ Q   F+ +     V +L   +YGLKQA   WN   + T+   GF ++  E  +Y +       ++ +YVD++L+       
Subjt:  MDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKVAFLILYVDNMLLIGNDVGY

Query:  LTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLR-------RAYYLSGIGSTCLRN-----KLIHAILYT----RP
           +K  L     MKDLG+    LG+  I    N  +TLS   YI K   +    T +        +  L    S  L++      ++  +L+     RP
Subjt:  LTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLR-------RAYYLSGIGSTCLRN-----KLIHAILYT----RP

Query:  DICYVVGIVSRYQSNP
        DI Y V ++SR+   P
Subjt:  DICYVVGIVSRYQSNP

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.9e-20

29.96

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Query:  SIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKVA
        SIRI+L +A+   + I ++DV   F      + ++MSQ   FI +D+   VCKL +++YGLKQA R+W +     + + GF  +V +  ++       + 
Subjt:  SIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKVA

Query:  FLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRT-----------LRRAYYLSGIGSTCL
        ++++YVD++L+ GND   L N    L  +  +KD  E  Y LGI+    R    L LSQ  YI     D+  RT           +  +  LS    T L
Subjt:  FLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRT-----------LRRAYYLSGIGSTCL

Query:  RNKL--------IHAILYTRPDICYVVGIVSRYQSNP
         +          +  + +TRPDI Y V  +S++   P
Subjt:  RNKL--------IHAILYTRPDICYVVGIVSRYQSNP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

8.0e-19

27.43

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Query:  SIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKVA
        SIRI+L +A+   + I ++DV   F      + ++MSQ   F+ +D+   VC+L ++IYGLKQA R+W +   T + + GF  ++ +  ++       + 
Subjt:  SIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKVA

Query:  FLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRT-----------LRRAYYLSGIGSTCL
        ++++YVD++L+ GND   L +    L  +  +K+  +  Y LGI+    R  + L LSQ  Y      D+  RT           +  +  L+    T L
Subjt:  FLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRT-----------LRRAYYLSGIGSTCL

Query:  RNKL--------IHAILYTRPDICYVVGIVSRYQSNP
         +          +  + +TRPD+ Y V  +S+Y   P
Subjt:  RNKL--------IHAILYTRPDICYVVGIVSRYQSNP

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.8e-19

29.87

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Query:  LKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQE----QKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKI
        L S++++L+I+  Y++ + ++D+   F N + +E I+M     +  +  +      VC L +SIYGLKQASR W ++F  T+  +GF Q+  +   + KI
Subjt:  LKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQE----QKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKI

Query:  NKGKVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIR
               +++YVD++++  N+   +  +K+ L +  +++DLG  +Y LG++I R
Subjt:  NKGKVAFLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIR

ATMG00810.1 DNA/RNA polymerases superfamily protein

2.3e-05

31.82

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Query:  FLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKC-----WFDIRCRTLRRAYYLSGIGSTCLR-----
        +L+LYVD++LL G+    L  +   L +   MKDLG   Y LGIQI        L LSQ  Y ++        D +  +      L+   ST        
Subjt:  FLILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKC-----WFDIRCRTLRRAYYLSGIGSTCLR-----

Query:  -NKLIHAILY---TRPDICYVVGIVSRYQSNP
           ++ A+ Y   TRPDI Y V IV +    P
Subjt:  -NKLIHAILY---TRPDICYVVGIVSRYQSNP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTAAAGTCTATAAGGATTCTTTTGTCCATAGCCATATTTTATGATTATGAAATATGGAAAATGGATGTCAAGACTACTTTTCCGAATGACAATTTTGAAGAG
AGTATCTTTATGTCTCAGTTCGAGCGGTTCATAACCCAAGATCAAGAGCAAAAAGTTTGCAAGTTGAATCGATCTATTTATGGGTTGAAACAAGCATCTAGATCT
TGGAACATTAGGTTTGATACTACGATCAATTCTTACGGTTTTGACCAAAACGTTGAGGAACCTTGTGTATACAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTA
ATACTTTATGTGGACAATATGCTCCTCATTGGGAATGATGTGGGATACCTAACTAACATTAAAACTTGGCTGGTAGCCCAATTACAAATGAAAGATTTGGGAGAA
GCACAATATGTTCTTGGGATCCAAATCATAAGGGATCGTAAGAACAAAATGCTAACACTGTCTCAGGCAACCTATATAAAAAAATGTTGGTTTGATATTCGATGC
AGAACTCTAAGAAGGGCTTATTACCTTTCAGGCATTGGGTCCACTTGTCTAAGGAACAAATTAATACATGCTATACTCTACACTAGGCCAGACATTTGTTATGTA
GTGGGAATAGTCAGTAGGTATCAGTCCAACCCAGGTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLKSIRILLSIAIFYDYEIWKMDVKTTFPNDNFEESIFMSQFERFITQDQEQKVCKLNRSIYGLKQASRSWNIRFDTTINSYGFDQNVEEPCVYKKINKGKVAFL
ILYVDNMLLIGNDVGYLTNIKTWLVAQLQMKDLGEAQYVLGIQIIRDRKNKMLTLSQATYIKKCWFDIRCRTLRRAYYLSGIGSTCLRNKLIHAILYTRPDICYV
VGIVSRYQSNPG

Cmc03g0068771 (gene) of Melon (Charmono) v1.1 genome