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Cmc03g0068901 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0068901
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationCMiso1.1chr03:13398720..13398977
RNA-Seq ExpressionCmc03g0068901
SyntenyCmc03g0068901
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042141.1 hypothetical protein E6C27_scaffold67G006300 [Cucumis melo var. makuwa]5.3e-3790.59Show/hide
Query:  MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        MGFIRPSASPWGAPVLFVKKKDGTLRLCI YRQLNKVTI+NKYPLP+IDDLFDQ  GASVFSKIDLRSGYHQLKVKESD+ KT F
Subjt:  MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

KAA0042457.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-3791.67Show/hide
Query:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        GFIRPSAS WGAPVLFVKKKDGT RLCI YRQLNKVTI NKYPLP+IDDLFDQLRGASVFSKIDLRSGYHQLKVKESD+PKT F
Subjt:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

KAG8487764.1 hypothetical protein CXB51_018053 [Gossypium anomalum]1.6e-3689.29Show/hide
Query:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        GFIRPS SPWGAPVLFVKKKDG++RLCI YRQLNKVTI NKYPLP+IDDLFDQLRGASVFSKIDLRSGY+QLKVKESD+PKT F
Subjt:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

TYK18080.1 hypothetical protein E5676_scaffold306G004160 [Cucumis melo var. makuwa]5.3e-3790.59Show/hide
Query:  MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        MGFIRPSASPWGAPVLFVKKKDGTLRLCI YRQLNKVTI+NKYPLP+IDDLFDQ  GASVFSKIDLRSGYHQLKVKESD+ KT F
Subjt:  MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

TYK22919.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-3791.67Show/hide
Query:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        GFIRPSAS WGAPVLFVKKKDGT RLCI YRQLNKVTI NKYPLP+IDDLFDQLRGASVFSKIDLRSGYHQLKVKESD+PKT F
Subjt:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

TrEMBL top hitse value%identityAlignment
A0A5A7SPH3 Putative Gag-pol protein1.3e-3688.1Show/hide
Query:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        G+IRPS SPWGAPVLFVKKKDGTLRLCI YRQLNKVTI NKYPLP+IDDLFDQLRGA++FSKIDLRSGYHQLKV+ESD+ KTTF
Subjt:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

A0A5A7TKQ0 Uncharacterized protein2.6e-3790.59Show/hide
Query:  MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        MGFIRPSASPWGAPVLFVKKKDGTLRLCI YRQLNKVTI+NKYPLP+IDDLFDQ  GASVFSKIDLRSGYHQLKVKESD+ KT F
Subjt:  MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

A0A5A7TL70 Reverse transcriptase4.4e-3791.67Show/hide
Query:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        GFIRPSAS WGAPVLFVKKKDGT RLCI YRQLNKVTI NKYPLP+IDDLFDQLRGASVFSKIDLRSGYHQLKVKESD+PKT F
Subjt:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

A0A5D3D2Y2 Uncharacterized protein2.6e-3790.59Show/hide
Query:  MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        MGFIRPSASPWGAPVLFVKKKDGTLRLCI YRQLNKVTI+NKYPLP+IDDLFDQ  GASVFSKIDLRSGYHQLKVKESD+ KT F
Subjt:  MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

A0A5D3DI38 Reverse transcriptase4.4e-3791.67Show/hide
Query:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        GFIRPSAS WGAPVLFVKKKDGT RLCI YRQLNKVTI NKYPLP+IDDLFDQLRGASVFSKIDLRSGYHQLKVKESD+PKT F
Subjt:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein2.4e-1644.05Show/hide
Query:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        G IR S +    PV+FV KK+GTLR+ + Y+ LNK    N YPLP I+ L  +++G+++F+K+DL+S YH ++V++ D  K  F
Subjt:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

P31843 RNA-directed DNA polymerase homolog1.4e-1660.66Show/hide
Query:  TLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTT
        +LR+CI YR L KVTI NKYP+P++DDLFD+L  A+ F+K+DLRSGY Q+++ + D PKTT
Subjt:  TLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.6e-2051.81Show/hide
Query:  FIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        FI PS SP  +PV+ V KKDGT RLC+ YR LNK TI + +PLP+ID+L  ++  A +F+ +DL SGYHQ+ ++  D  KT F
Subjt:  FIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.6e-2051.81Show/hide
Query:  FIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        FI PS SP  +PV+ V KKDGT RLC+ YR LNK TI + +PLP+ID+L  ++  A +F+ +DL SGYHQ+ ++  D  KT F
Subjt:  FIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

Q9UR07 Transposon Tf2-11 polyprotein2.4e-1644.05Show/hide
Query:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF
        G IR S +    PV+FV KK+GTLR+ + Y+ LNK    N YPLP I+ L  +++G+++F+K+DL+S YH ++V++ D  K  F
Subjt:  GFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTATCCGACCTAGTGCATCTCCATGGGGTGCACCAGTGTTGTTTGTTAAAAAGAAGGATGGTACATTGAGGTTATGTATTGGCTACCGCCAATTAAATAAGGT
AACAATATATAACAAATATCCTTTGCCCCAAATAGATGATTTGTTTGATCAACTTCGTGGTGCCTCTGTATTCTCTAAGATTGACTTGAGGTCAGGTTATCATCAATTGA
AAGTTAAAGAGTCAGATATGCCGAAAACAACTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTTATCCGACCTAGTGCATCTCCATGGGGTGCACCAGTGTTGTTTGTTAAAAAGAAGGATGGTACATTGAGGTTATGTATTGGCTACCGCCAATTAAATAAGGT
AACAATATATAACAAATATCCTTTGCCCCAAATAGATGATTTGTTTGATCAACTTCGTGGTGCCTCTGTATTCTCTAAGATTGACTTGAGGTCAGGTTATCATCAATTGA
AAGTTAAAGAGTCAGATATGCCGAAAACAACTTTTTGA
Protein sequenceShow/hide protein sequence
MGFIRPSASPWGAPVLFVKKKDGTLRLCIGYRQLNKVTIYNKYPLPQIDDLFDQLRGASVFSKIDLRSGYHQLKVKESDMPKTTF