CuGenDBv2

Gene ID	Cmc03g0068991
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr03:13592528..13593315
RNA-Seq Expression	Cmc03g0068991
Synteny	Cmc03g0068991
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-97

71.76

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF SVWE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY QREGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ FDQN+DE CV+KKINK KVAFLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGEAQYVLGIQII+DRKNK LALSQATYIDK+LV+YSM NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

KAA0033121.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-95

70.61

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF  +WE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY QREGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ F+QN+DE CV+KKINK KV FLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGEAQYVLGIQII+DRKNK LALSQATYIDKMLV+YSM NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

4.7e-96

70.61

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF SVWE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY ++EGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ FDQN+DE CV+KKINK KVAFLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGE QYVLGIQII+DRKNK LALSQATYIDK+LV+YSM NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-97

71.76

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF SVWE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY QREGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ FDQN+DE CV+KKINK KVAFLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGEAQYVLGIQII+DRKNK LALSQATYIDK+LV+YSM NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]

5.6e-97

71.76

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF SVWE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY QREGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ FDQN+DE CV+KKINK KVAFLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGEAQYVLGIQII+DRKNK LALSQATYIDKMLV+Y M NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

2.3e-96

70.61

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF SVWE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY ++EGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ FDQN+DE CV+KKINK KVAFLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGE QYVLGIQII+DRKNK LALSQATYIDK+LV+YSM NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

A0A5A7TZD0 Gag/pol protein

1.2e-97

71.76

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF SVWE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY QREGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ FDQN+DE CV+KKINK KVAFLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGEAQYVLGIQII+DRKNK LALSQATYIDK+LV+YSM NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

A0A5A7UYE8 Gag/pol protein

1.2e-97

71.76

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF SVWE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY QREGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ FDQN+DE CV+KKINK KVAFLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGEAQYVLGIQII+DRKNK LALSQATYIDK+LV+YSM NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

A0A5D3CYF4 Gag/pol protein

2.7e-97

71.76

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF SVWE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY QREGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ FDQN+DE CV+KKINK KVAFLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGEAQYVLGIQII+DRKNK LALSQATYIDKMLV+Y M NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

A0A5D3CZY3 Gag/pol protein

5.1e-96

70.61

Show/hide

Query:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------
        MNDVDKDQWVK +DL+M+SMYF  +WE    P+GVKPIGCK IYK+K+DS  KVQTFKARLVAKGY QREGVDYE                         
Subjt:  MNDVDKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-------------------------

Query:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND
               TAFLN NLEESIF SQPEGF+TQGQ+QKVC LNRSIYGL QASR WNIRFDT IKS+ F+QN+DE CV+KKINK KV FLVLY+DDILLIGND
Subjt:  -------TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGND

Query:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK
        +GYLT++K WLA QFQMK+LGEAQYVLGIQII+DRKNK LALSQATYIDKMLV+YSM NSKK
Subjt:  MGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSKK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.7e-24

27.24

Show/hide

Query:  DKDQWVKPIDLKMKSMYFISVW----EPKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-----------------------------
        DK  W + I+ ++ +    + W     P+    +  + ++  K + +     +KARLVA+G+ Q+  +DYE                             
Subjt:  DKDQWVKPIDLKMKSMYFISVW----EPKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-----------------------------

Query:  ---TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVH--KKINKSKVAFLVLYIDDILLIGNDMG
           TAFLN  L+E I+   P+G         VC LN++IYGL QA+R W   F+  +K  +F  +  + C++   K N ++  +++LY+DD+++   DM 
Subjt:  ---TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVH--KKINKSKVAFLVLYIDDILLIGNDMG

Query:  YLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHN
         + N K +L  +F+M +L E ++ +GI+I  + +   + LSQ+ Y+ K+L +++M N
Subjt:  YLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHN

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-42

35.66

Show/hide

Query:  DKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-----------------------------
        +K+Q +K +  +M+S+     ++    PKG +P+ CK ++K KKD   K+  +KARLV KG+ Q++G+D++                             
Subjt:  DKDQWVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYE-----------------------------

Query:  ---TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVH-KKINKSKVAFLVLYIDDILLIGNDMGY
           TAFL+ +LEE I+  QPEGF   G+K  VC LN+S+YGL QA R W ++FD+ +KS  + +   + CV+ K+ +++    L+LY+DD+L++G D G 
Subjt:  ---TAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVH-KKINKSKVAFLVLYIDDILLIGNDMGY

Query:  LTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSK
        +  +K  L+  F MK+LG AQ +LG++I+++R ++ L LSQ  YI+++L +++M N+K
Subjt:  LTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSK

P25600 Putative transposon Ty5-1 protein YCL074W

3.0e-13

28.48

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Query:  VDYETAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGY
        +D +TAFLN  ++E I+  QP GFV +     V  L   +YGL QA   WN   +  +K   F ++  E  ++ +       ++ +Y+DD+L+       
Subjt:  VDYETAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGY

Query:  LTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSK
           +K  L   + MK+LG+    LG+  I    N  + LS   YI K   +  ++  K
Subjt:  LTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

8.5e-24

30.43

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Query:  PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDY--------------------------------ETAFLNVNLEESIFTSQPEGFVTQG
        P  V  +GC+ I+ KK +S   +  +KARLVAKGY QR G+DY                                  AFL   L + ++ SQP GF+ + 
Subjt:  PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDY--------------------------------ETAFLNVNLEESIFTSQPEGFVTQG

Query:  QKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGYLTNIKTWLAVQFQMKELGEAQYVLGIQI
        +   VC L +++YGL QA R W +     + +  F  ++ ++ +        + ++++Y+DDIL+ GND   L N    L+ +F +K+  E  Y LGI+ 
Subjt:  QKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGYLTNIKTWLAVQFQMKELGEAQYVLGIQI

Query:  IKDRKNKMLALSQATYIDKMLVQYSMHNSK
           R    L LSQ  YI  +L + +M  +K
Subjt:  IKDRKNKMLALSQATYIDKMLVQYSMHNSK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.7e-24

29.3

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Query:  DQWVKPIDLKMKSMYFISVWE-----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDY-------------------------------
        D+W + +  ++ +      W+     P  V  +GC+ I+ KK +S   +  +KARLVAKGY QR G+DY                               
Subjt:  DQWVKPIDLKMKSMYFISVWE-----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDY-------------------------------

Query:  -ETAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGYLT
           AFL   L + ++ SQP GFV + +   VC L ++IYGL QA R W +   T + +  F  +I ++ +        + ++++Y+DDIL+ GND   L 
Subjt:  -ETAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGYLT

Query:  NIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSK
        +    L+ +F +KE  +  Y LGI+    R  + L LSQ  Y   +L + +M  +K
Subjt:  NIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSK

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.2e-27

31.88

Show/hide

Query:  WVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDY--------------------------------ET
        W   +D ++ +M     WE    P   KPIGCK +YK K +S   ++ +KARLVAKGY Q+EG+D+                                  
Subjt:  WVKPIDLKMKSMYFISVWE----PKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDY--------------------------------ET

Query:  AFLNVNLEESIFTSQPEGFVT-QGQK---QKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGYL
        AFLN +L+E I+   P G+   QG       VC L +SIYGL QASR W ++F   +  F F Q+  +     KI  +    +++Y+DDI++  N+   +
Subjt:  AFLNVNLEESIFTSQPEGFVT-QGQK---QKVCMLNRSIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGYL

Query:  TNIKTWLAVQFQMKELGEAQYVLGIQIIK
          +K+ L   F++++LG  +Y LG++I +
Subjt:  TNIKTWLAVQFQMKELGEAQYVLGIQIIK

ATMG00810.1 DNA/RNA polymerases superfamily protein

3.1e-05

39.47

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Query:  FLVLYIDDILLIGNDMGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSK
        +L+LY+DDILL G+    L  +   L+  F MK+LG   Y LGIQI        L LSQ  Y +++L    M + K
Subjt:  FLVLYIDDILLIGNDMGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQATYIDKMLVQYSMHNSK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATGATGTAGACAAGGACCAATGGGTCAAACCCATTGACCTTAAAATGAAGTCTATGTACTTCATTTCAGTATGGGAGCCTAAAGGGGTAAAACCTATAGGG
TGTAAATCGATCTATAAGAAAAAGAAAGATTCAATTAGGAAGGTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATATCCAAAGAGAAGGGGTTGACTAT
GAGACTGCTTTTCTGAATGTCAATCTTGAAGAGAGTATCTTTACGTCTCAGCCCGAGGGGTTCGTAACCCAAGGTCAGAAGCAAAAAGTTTGCATGTTGAATCGA
TCCATTTATGGGCTGAATCAAGCATCTAGATTTTGGAACATTAGGTTTGATACTGTGATCAAATCCTTCGATTTTGACCAAAACATTGATGAATCTTGTGTACAC
AAGAAAATCAACAAAAGTAAAGTAGCTTTCTTAGTGCTTTATATCGACGATATCCTCCTCATTGGGAATGATATGGGATACCTAACTAACATTAAAACTTGGTTA
GCAGTCCAATTCCAAATGAAAGAATTGGGAGAAGCACAATATGTTCTTGGGATCCAAATCATAAAGGATCGTAAGAATAAAATGTTAGCACTGTCTCAAGCAACT
TATATTGATAAAATGTTAGTTCAATATTCGATGCATAACTCTAAGAAATTCGATGCATAA

mRNA sequence

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Protein sequence

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MNDVDKDQWVKPIDLKMKSMYFISVWEPKGVKPIGCKSIYKKKKDSIRKVQTFKARLVAKGYIQREGVDYETAFLNVNLEESIFTSQPEGFVTQGQKQKVCMLNR
SIYGLNQASRFWNIRFDTVIKSFDFDQNIDESCVHKKINKSKVAFLVLYIDDILLIGNDMGYLTNIKTWLAVQFQMKELGEAQYVLGIQIIKDRKNKMLALSQAT
YIDKMLVQYSMHNSKKFDA

Cmc03g0068991 (gene) of Melon (Charmono) v1.1 genome