; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0070201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0070201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy1-copia retrotransposon protein
Genome locationCMiso1.1chr03:15904041..15904847
RNA-Seq ExpressionCmc03g0070201
SyntenyCmc03g0070201
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040554.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.4e-13792.88Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLR NLVS SLLNR 
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+DDKVFLTKNGDFV KGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTS++HETGKCP+C+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLIKTKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]9.9e-13893.26Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNR 
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+ DKV LTKNGDFVGKGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCPIC+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

TYK05597.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.4e-13792.88Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNR 
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+ DKV LTKNGDFVGKGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

TYK12114.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.3e-13793.63Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+ DKV LTKNGDFVGKGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLIKTKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

TYK27931.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.4e-13792.88Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNR 
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+ DKV LTKNGDFVGKGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

TrEMBL top hitse value%identityAlignment
A0A5A7TAR9 Ty1-copia retrotransposon protein4.1e-13792.88Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLR NLVS SLLNR 
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+DDKVFLTKNGDFV KGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTS++HETGKCP+C+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLIKTKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

A0A5D3BZI1 Ty1-copia retrotransposon protein4.8e-13893.26Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNR 
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+ DKV LTKNGDFVGKGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCPIC+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

A0A5D3C1A6 Ty1-copia retrotransposon protein4.1e-13792.88Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNR 
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+ DKV LTKNGDFVGKGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

A0A5D3CLR6 Ty1-copia retrotransposon protein6.3e-13893.63Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+ DKV LTKNGDFVGKGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLIKTKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

A0A5D3DWC4 Ty1-copia retrotransposon protein4.1e-13792.88Show/hide
Query:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV
        QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAG+IGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNR 
Subjt:  QDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRV

Query:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK
        GLKIVL+ DKV LTKNGDFVGKGYLSNGLFVLNT+SMNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK
Subjt:  GLKIVLKDDKVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFK

Query:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        PVEYRTT+LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TKNEA SMF+KFK E EN
Subjt:  PVEYRTTDLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.6e-1627.45Show/hide
Query:  WILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRVGLKIVLKDDKVFLTKNGDFV
        ++LD+GAS H   +  L  D  +      + +       +    + I++L +   ++L +VL+      NL+S   L   G+ I      V ++KNG  V
Subjt:  WILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRVGLKIVLKDDKVFLTKNGDFV

Query:  GKGY-LSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLK------DLRLINTSESHETGKCPICVESKFHKKPFKPVEYRT--TDLLE
         K   + N + V+N  + + NA        +  LWH R GH++   + ++K      D  L+N  E      C  C+  K  + PFK ++ +T     L 
Subjt:  GKGY-LSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLK------DLRLINTSESHETGKCPICVESKFHKKPFKPVEYRT--TDLLE

Query:  LIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYE
        ++HSD+    T  +   KNY+V FVD ++ +   YLIK K++  SMF  F  + E
Subjt:  LIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-2931.97Show/hide
Query:  KTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRVGLKIVLKDDKVFLTKNG
        +++W++DT AS H    R+L   Y    D   V MGN++ + + G G + +K   G TL L +V +VP LR NL+SG  L+R G +    + K  LTK  
Subjt:  KTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRVGLKIVLKDDKVFLTKNG

Query:  DFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTDLLELIHSDL
          + KG     L+  N        +++   I S +LWH R+GH++   ++ L    LI+ ++      C  C+  K H+  F+    R  ++L+L++SD+
Subjt:  DFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTDLLELIHSDL

Query:  ADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKF
               S  G  Y+V+F+DD SR   +Y++KTK++   +F KF
Subjt:  ADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.6e-1827.91Show/hide
Query:  NKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLL---NRVGLKIVLKDDKVFL
        +  +W+LD+GA+ H  ++   L  ++    G+ V + + +T  +   G   L  T  + L+L N+LYVP++ +NL+S   L   N V ++      +V  
Subjt:  NKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLL---NRVGLKIVLKDDKVFL

Query:  TKNGDFVGKGYLSNGLF---VLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTDL
           G  + +G   + L+   + ++  ++  AS S+    S+  WH RLGH   + +   + +  L   + SH+   C  C+ +K +K PF      +T  
Subjt:  TKNGDFVGKGYLSNGLF---VLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTDL

Query:  LELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
        LE I+SD+       S     YYV FVD ++R+T +Y +K K++    F+ FK   EN
Subjt:  LELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.9e-2030Show/hide
Query:  NKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLL---NRVGLKIVLKDDKVFL
        N  +W+LD+GA+ H  ++   L  ++    G+ V + + +T  +   G   L  TS ++L L+ VLYVP++ +NL+S   L   NRV ++      +V  
Subjt:  NKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLL---NRVGLKIVLKDDKVFL

Query:  TKNGDFVGKGYLSNGLF-----VLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVESKFHKKPFKPVEYRTT
           G  + +G   + L+         VSM A+  S A    + + WH RLGH + A +   + +  L   + SH+   C  C  +K HK PF      ++
Subjt:  TKNGDFVGKGYLSNGLF-----VLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVESKFHKKPFKPVEYRTT

Query:  DLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN
          LE I+SD+       S     YYV FVD ++R+T +Y +K K++    F+ FK   EN
Subjt:  DLLELIHSDLADFRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGACAGTGAGATCATAGCAGCCATAGTAGAGGCCAATCTGATAGAAAATAAGACAGACTGGATTCTCGATACTGGAGCCTCGAGACACTTCTGCACCAATCGTGA
ACTTCTCCATGACTACGAAGACACTGCTGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGATTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTG
GCAAAACTTTATCTTTAAGTAATGTCCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGTCGGGCTTAAAATTGTACTAAAAGATGAC
AAAGTTTTCCTCACCAAAAATGGAGATTTTGTCGGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACAGTTTCCATGAATGCAAATGCTTCTAGTTCTGCTTA
CGTGATTGAATCTGCTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACTTCTGAGTCGCATGAAA
CTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCCATAAGAAGCCTTTCAAACCAGTTGAATATAGAACTACTGATCTGCTAGAATTAATTCACTCGGATCTAGCCGAT
TTTAGAACCACTACTAGTAGATGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGGTAG
TATGTTTCTAAAATTCAAGGAAGAATATGAGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGACAGTGAGATCATAGCAGCCATAGTAGAGGCCAATCTGATAGAAAATAAGACAGACTGGATTCTCGATACTGGAGCCTCGAGACACTTCTGCACCAATCGTGA
ACTTCTCCATGACTACGAAGACACTGCTGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGATTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTG
GCAAAACTTTATCTTTAAGTAATGTCCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGTCGGGCTTAAAATTGTACTAAAAGATGAC
AAAGTTTTCCTCACCAAAAATGGAGATTTTGTCGGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACAGTTTCCATGAATGCAAATGCTTCTAGTTCTGCTTA
CGTGATTGAATCTGCTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACTTCTGAGTCGCATGAAA
CTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCCATAAGAAGCCTTTCAAACCAGTTGAATATAGAACTACTGATCTGCTAGAATTAATTCACTCGGATCTAGCCGAT
TTTAGAACCACTACTAGTAGATGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGGTAG
TATGTTTCTAAAATTCAAGGAAGAATATGAGAATTAG
Protein sequenceShow/hide protein sequence
MQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGLIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRVGLKIVLKDD
KVFLTKNGDFVGKGYLSNGLFVLNTVSMNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTDLLELIHSDLAD
FRTTTSRCGKNYYVSFVDDYSRFTKIYLIKTKNEAGSMFLKFKEEYEN