; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0070801 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0070801
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy1-copia retrotransposon protein
Genome locationCMiso1.1chr03:16773389..16774598
RNA-Seq ExpressionCmc03g0070801
SyntenyCmc03g0070801
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.5e-14086.39Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLLSSGLSDNMWGE V SACF+LNRI HKRLDKTPYEL KGHAPNLSYLKVWGCLAKVP  ALKK+ VG KTFDCIFI YAQNSA YRFMCLNDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLEL--RRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVFPLKQSL  PSLS RMHDPE   IVSE PVS+ V+T NL  EL  RRSKRQRTEKSFGPDFLSTFIVER +EIDCNFTNLFLI+ED 
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLEL--RRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR
        KTYQEALNSV+S MWKEAIKSELDSL MNH W+LVDLPMGNKPIRCKWIFKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR

KAA0038001.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.1e-14289.55Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLLSSGLSDN+WGEVV SACFVLNRI HKRLDKTPYEL KGHAPNLSYLKVWGCLAKVPF ALKKS VGSKTFDCIFI YAQNS  YRFMCLNDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVF LKQSL  PSLSKRMHDPEN SIVSET VS+ VNTSNLR  LELRRSKRQRTEKSF PDFLSTFIVER +EID NFTNL+LIDEDP
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV
        KTYQE LNSVE SMWKEAIKSELDSLVMNH WDLVDLPMGNKPIRC+WIFKRKTKPNGS+ERYKARLVVVGYTQKQGIDYFDTYSPV
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV

TYJ97996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.5e-13790.84Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLLSSGLS+NMWGE V SA FVLNRI HKRLDKTPYEL KGHAP LSYLKVWGCLAKVPF ALKKS VGSKTFDCIFI YAQNS  YRFMC NDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVFPLKQSLS PSLSKRMHDPENPSIVSETPVS+TVNTSNLR  LEL RSKRQRTEKSFGPDFLSTFIVER +EIDCNFTNL+LIDEDP
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT
        KTYQEALNSVESSMWKEAIKSELDSLVMNH WDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYK RLVVVGYT
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.8e-14787.17Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLLSSGLSDNMWGE V SACF+LNRI HKRLDKTPYEL KGHAPNLSYLKVWGCLAKVP  ALKK+ VG KTFDCIFI YAQNSA YRFMCLNDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLEL--RRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVFPLKQSL  PSLS RMHDPE   IVSE PVS+TV+T NL  EL  RRSKRQRTEKSFGPDFLSTFIVER +EIDCNFTNLFLIDEDP
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLEL--RRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALA
        KTYQEALNSV+S MWKEAIKSELDSL MNH W+LVDLPMGNKPIRCKWIFKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR LIALA
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALA

Query:  AIHS
        AIH+
Subjt:  AIHS

TYK12176.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.2e-11887.45Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLL+SGLSDNMWGEVV SACF+LNRI HKRL+KTPYEL K HA NLSYLKVWGCLAKVPF ALKK+ +GSKTFDCIFI Y QNSA YRFMCLNDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVFPLKQSL  PSLSKRMHDPENPSIVSETPVS+TV+TSNLR  LELRRSKRQRTEKSFG DFLSTFIVE+ +EIDCNFTNL+LIDEDP
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCK
        KTYQEALNSV+SSMWKEAIKSELDSLVMNH W+LVDLPMGNKPIRCK
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCK

TrEMBL top hitse value%identityAlignment
A0A5A7T166 Ty1-copia retrotransposon protein7.2e-14186.39Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLLSSGLSDNMWGE V SACF+LNRI HKRLDKTPYEL KGHAPNLSYLKVWGCLAKVP  ALKK+ VG KTFDCIFI YAQNSA YRFMCLNDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLEL--RRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVFPLKQSL  PSLS RMHDPE   IVSE PVS+ V+T NL  EL  RRSKRQRTEKSFGPDFLSTFIVER +EIDCNFTNLFLI+ED 
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLEL--RRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR
        KTYQEALNSV+S MWKEAIKSELDSL MNH W+LVDLPMGNKPIRCKWIFKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR

A0A5A7T8N6 Ty1-copia retrotransposon protein1.0e-14289.55Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLLSSGLSDN+WGEVV SACFVLNRI HKRLDKTPYEL KGHAPNLSYLKVWGCLAKVPF ALKKS VGSKTFDCIFI YAQNS  YRFMCLNDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVF LKQSL  PSLSKRMHDPEN SIVSET VS+ VNTSNLR  LELRRSKRQRTEKSF PDFLSTFIVER +EID NFTNL+LIDEDP
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV
        KTYQE LNSVE SMWKEAIKSELDSLVMNH WDLVDLPMGNKPIRC+WIFKRKTKPNGS+ERYKARLVVVGYTQKQGIDYFDTYSPV
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV

A0A5D3BFX4 Ty1-copia retrotransposon protein7.4e-13890.84Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLLSSGLS+NMWGE V SA FVLNRI HKRLDKTPYEL KGHAP LSYLKVWGCLAKVPF ALKKS VGSKTFDCIFI YAQNS  YRFMC NDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVFPLKQSLS PSLSKRMHDPENPSIVSETPVS+TVNTSNLR  LEL RSKRQRTEKSFGPDFLSTFIVER +EIDCNFTNL+LIDEDP
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT
        KTYQEALNSVESSMWKEAIKSELDSLVMNH WDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYK RLVVVGYT
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT

A0A5D3C5T2 Ty1-copia retrotransposon protein2.3e-14787.17Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLLSSGLSDNMWGE V SACF+LNRI HKRLDKTPYEL KGHAPNLSYLKVWGCLAKVP  ALKK+ VG KTFDCIFI YAQNSA YRFMCLNDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLEL--RRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVFPLKQSL  PSLS RMHDPE   IVSE PVS+TV+T NL  EL  RRSKRQRTEKSFGPDFLSTFIVER +EIDCNFTNLFLIDEDP
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLEL--RRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALA
        KTYQEALNSV+S MWKEAIKSELDSL MNH W+LVDLPMGNKPIRCKWIFKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR LIALA
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALA

Query:  AIHS
        AIH+
Subjt:  AIHS

A0A5D3CP43 Ty1-copia retrotransposon protein5.9e-11987.45Show/hide
Query:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        MM AMLL+SGLSDNMWGEVV SACF+LNRI HKRL+KTPYEL K HA NLSYLKVWGCLAKVPF ALKK+ +GSKTFDCIFI Y QNSA YRFMCLNDKT
Subjt:  MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP
        IN+SRDAEFFEHVFPLKQSL  PSLSKRMHDPENPSIVSETPVS+TV+TSNLR  LELRRSKRQRTEKSFG DFLSTFIVE+ +EIDCNFTNL+LIDEDP
Subjt:  INKSRDAEFFEHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLR--LELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDP

Query:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCK
        KTYQEALNSV+SSMWKEAIKSELDSLVMNH W+LVDLPMGNKPIRCK
Subjt:  KTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCK

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.7e-1823.99Show/hide
Query:  KAMLLSSGLSDNMWGEVVFSACFVLNRISHKRL---DKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQN------SATYRF
        + M+  + L  + WGE V +A +++NRI  + L    KTPYE+     P L +L+V+G    V     K+     K+F  IF+ Y  N      +   +F
Subjt:  KAMLLSSGLSDNMWGEVVFSACFVLNRISHKRL---DKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQN------SATYRF

Query:  MCLNDKTINKSR----DAEFFEHVFPLKQS-----LSIPSLSKRMHDPENPS---------IVSETPVSKTVNTSN-----LRLE---------------
        +   D  ++++      A  FE VF LK S      + P+ S+++   E P+          + ++  S+  N  N     ++ E               
Subjt:  MCLNDKTINKSR----DAEFFEHVFPLKQS-----LSIPSLSKRMHDPENPS---------IVSETPVSKTVNTSN-----LRLE---------------

Query:  ---------LRRSKRQRTE------------------------KSFGPD----------------FLSTFIVERCNEIDCNFTNLFL-----IDEDPKTY
                 L  SK+++ +                        K  G D                 L T      NE D +   + L      ++ P ++
Subjt:  ---------LRRSKRQRTE------------------------KSFGPD----------------FLSTFIVERCNEIDCNFTNLFL-----IDEDPKTY

Query:  QEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIAL
         E     + S W+EAI +EL++  +N+ W +   P     +  +W+F  K    G+  RYKARLV  G+TQK  IDY +T++PV +I++ R +++L
Subjt:  QEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIAL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-3130.72Show/hide
Query:  MKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLD-KTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT
        +++ML  + L  + WGE V +AC+++NR     L  + P  +      + S+LKV+GC A       +++ +  K+  CIFI Y      YR      K 
Subjt:  MKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLD-KTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKT

Query:  INKSRDAEFFEHVFPLKQSLS-------------IPSLSKR-----------MHDPENPSIVSE---------TPVSKTVNTSNLRLELRRSKRQRTEKS
        + +SRD  F E        +S             IPS S                 E P  V E           V            LRRS+R R E  
Subjt:  INKSRDAEFFEHVFPLKQSLS-------------IPSLSKR-----------MHDPENPSIVSE---------TPVSKTVNTSNLRLELRRSKRQRTEKS

Query:  FGPDFLSTFIVERCNEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVV
          P   ST  V            L   D +P++ +E L+  E +   +A++ E++SL  N  + LV+LP G +P++CKW+FK K   +  + RYKARLVV
Subjt:  FGPDFLSTFIVERCNEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVV

Query:  VGYTQKQGIDYFDTYSPVTKITTIRVLIALAA
         G+ QK+GID+ + +SPV K+T+IR +++LAA
Subjt:  VGYTQKQGIDYFDTYSPVTKITTIRVLIALAA

P92520 Uncharacterized mitochondrial protein AtMg008206.9e-1638.1Show/hide
Query:  IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRV
        I ++PK+    + +++   W +A++ ELD+L  N  W LV  P+    + CKW+FK K   +G+++R KARLV  G+ Q++GI + +TYSPV +  TIR 
Subjt:  IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRV

Query:  LIALA
        ++ +A
Subjt:  LIALA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.3e-1941.28Show/hide
Query:  DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRV
        + +P+T   A+ +++   W+ A+ SE+++ + NH WDLV  P  +  I  C+WIF +K   +GS+ RYKARLV  GY Q+ G+DY +T+SPV K T+IR+
Subjt:  DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRV

Query:  LIALAAIHS
        ++ +A   S
Subjt:  LIALAAIHS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.0e-1941.28Show/hide
Query:  DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRV
        + +P+T   A+ +++   W++A+ SE+++ + NH WDLV  P  +  I  C+WIF +K   +GS+ RYKARLV  GY Q+ G+DY +T+SPV K T+IR+
Subjt:  DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRV

Query:  LIALAAIHS
        ++ +A   S
Subjt:  LIALAAIHS

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.2e-2443.93Show/hide
Query:  EDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLI
        ++P TY EA    E  +W  A+  E+ ++   H W++  LP   KPI CKW++K K   +G+IERYKARLV  GYTQ++GID+ +T+SPV K+T++++++
Subjt:  EDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLI

Query:  ALAAIHS
        A++AI++
Subjt:  ALAAIHS

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)4.9e-1738.1Show/hide
Query:  IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRV
        I ++PK+    + +++   W +A++ ELD+L  N  W LV  P+    + CKW+FK K   +G+++R KARLV  G+ Q++GI + +TYSPV +  TIR 
Subjt:  IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRV

Query:  LIALA
        ++ +A
Subjt:  LIALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGGCCATGTTATTAAGCTCTGGTCTATCTGATAATATGTGGGGAGAAGTTGTGTTTTCTGCGTGTTTTGTTCTTAACAGGATTTCCCACAAAAGGCTAGACAA
AACTCCATACGAACTCTTGAAAGGACATGCACCAAATCTTTCCTATTTGAAGGTCTGGGGATGCTTGGCTAAGGTACCATTTTCTGCATTGAAGAAATCTATGGTAGGGT
CTAAAACCTTTGACTGTATATTTATTAGGTATGCTCAAAATAGTGCTACATATAGGTTTATGTGTTTAAATGATAAAACTATAAACAAATCTAGAGATGCAGAATTCTTT
GAGCATGTATTTCCGTTAAAGCAATCATTGTCTATTCCTAGCCTATCTAAAAGAATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTAAAACTGT
TAATACTTCAAACTTAAGATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACTTTCATAGTGGAAAGGTGCAATGAAA
TTGACTGTAACTTCACAAACTTGTTCTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAA
CTGGATTCACTGGTCATGAATCATGCATGGGACTTAGTAGACCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATC
AATCGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGTCT
TGATTGCATTAGCTGCAATACATAGCCCTTCTTATTCACCAAATGGACGTAAAAACTGCATTTCTAAATGGTGA
mRNA sequenceShow/hide mRNA sequence
GGTATTATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAAGGCCATGTTATTAAGCTCTGG
TCTATCTGATAATATGTGGGGAGAAGTTGTGTTTTCTGCGTGTTTTGTTCTTAACAGGATTTCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTTGAAAGGACATG
CACCAAATCTTTCCTATTTGAAGGTCTGGGGATGCTTGGCTAAGGTACCATTTTCTGCATTGAAGAAATCTATGGTAGGGTCTAAAACCTTTGACTGTATATTTATTAGG
TATGCTCAAAATAGTGCTACATATAGGTTTATGTGTTTAAATGATAAAACTATAAACAAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTCCGTTAAAGCAATCATT
GTCTATTCCTAGCCTATCTAAAAGAATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTAAAACTGTTAATACTTCAAACTTAAGATTAGAACTTA
GGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACTTTCATAGTGGAAAGGTGCAATGAAATTGACTGTAACTTCACAAACTTGTTCTTA
ATAGATGAGGATCCTAAAACTTACCAAGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATGCATG
GGACTTAGTAGACCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATCGAAAGATACAAGGCTAGATTAGTGG
TAGTAGGGTATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGTCTTGATTGCATTAGCTGCAATACATAGCCCT
TCTTATTCACCAAATGGACGTAAAAACTGCATTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACATAACCAGAAGACTTTAAAATTTCTGGCCAAGAAAACAAAG
TGTGTAAACTGAGAAAATCCCTATACGGTCTCAACCAAGCTCCCAAGCAGTGGTATGAAAAGTTTAATAATACGTTGATAAACAATGGATTTAAAATAAATTCCTCAGAC
Protein sequenceShow/hide protein sequence
MMKAMLLSSGLSDNMWGEVVFSACFVLNRISHKRLDKTPYELLKGHAPNLSYLKVWGCLAKVPFSALKKSMVGSKTFDCIFIRYAQNSATYRFMCLNDKTINKSRDAEFF
EHVFPLKQSLSIPSLSKRMHDPENPSIVSETPVSKTVNTSNLRLELRRSKRQRTEKSFGPDFLSTFIVERCNEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSE
LDSLVMNHAWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALAAIHSPSYSPNGRKNCISKW