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Cmc03g0070811 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0070811
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr03:16774601..16774951
RNA-Seq ExpressionCmc03g0070811
SyntenyCmc03g0070811
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045258.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.0e-1786.79Show/hide
Query:  LSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
        + SHFEMKDLGEAD+ILGVKIRKNK+S+SLCQ+HYVEKILKKFDSFDVSP RT
Subjt:  LSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
KAA0049695.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-2392.06Show/hide
Query:  MELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
        MEL+TDTK FLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQ+HYVEKILKKFD FDVSP RT
Subjt:  MELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.3e-2895.71Show/hide
Query:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
        MLIFGTNMELITDTK FLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQ+HYVEKILKKFDSFDVSP RT
Subjt:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
XP_008441939.1 PREDICTED: uncharacterized protein LOC103485933 [Cucumis melo]6.3e-2396.67Show/hide
Query:  MELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSP
        MELITDTKLFLSSHFEMKDLGEADVILGVK RKNKTSLSLCQ+HYVEKILKKFDSFDVSP
Subjt:  MELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSP
XP_027936188.1 uncharacterized protein LOC114191208 [Vigna unguiculata]1.9e-1962.79Show/hide
Query:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPARTSLTLVNILGRIKEIVC
        MLIFG N+E+I DTK FL +HFEMKDLGEA+VILGVKIRK +   SLCQ++Y+EKILKKFD FD  P RT       L R  E  C
Subjt:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPARTSLTLVNILGRIKEIVC
TrEMBL top hitse value%identityAlignment
A0A1S3B571 uncharacterized protein LOC1034859333.1e-2396.67Show/hide
Query:  MELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSP
        MELITDTKLFLSSHFEMKDLGEADVILGVK RKNKTSLSLCQ+HYVEKILKKFDSFDVSP
Subjt:  MELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSP
A0A5A7TQW7 Ty1-copia retrotransposon protein5.1e-1886.79Show/hide
Query:  LSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
        + SHFEMKDLGEAD+ILGVKIRKNK+S+SLCQ+HYVEKILKKFDSFDVSP RT
Subjt:  LSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
A0A5A7U7W6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-2392.06Show/hide
Query:  MELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
        MEL+TDTK FLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQ+HYVEKILKKFD FDVSP RT
Subjt:  MELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
A0A5D3C5T2 Ty1-copia retrotransposon protein1.1e-2895.71Show/hide
Query:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
        MLIFGTNMELITDTK FLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQ+HYVEKILKKFDSFDVSP RT
Subjt:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
A0A5N6PGV2 Reverse transcriptase Ty1/copia-type domain-containing protein4.3e-1764.29Show/hide
Query:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
        MLIFG +M  I  TK FLSS FEMKDLGEADVILGVKI++    +SLCQ+HY+E++LKKFD F+++P +T
Subjt:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPART
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-0744.59Show/hide
Query:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTS--LSLCQAHYVEKILKKFDSFDVSPARTSL
        MLI G +  LI   K  LS  F+MKDLG A  ILG+KI + +TS  L L Q  Y+E++L++F+  +  P  T L
Subjt:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTS--LSLCQAHYVEKILKKFDSFDVSPARTSL
P92519 Uncharacterized mitochondrial protein AtMg008108.1e-0536.49Show/hide
Query:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPARTSLTL
        +L+ G++  L+      LSS F MKDLG     LG++I+ + + L L Q  Y E+IL      D  P  T L L
Subjt:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPARTSLTL
Arabidopsis top hitse value%identityAlignment
ATMG00810.1 DNA/RNA polymerases superfamily protein5.7e-0636.49Show/hide
Query:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPARTSLTL
        +L+ G++  L+      LSS F MKDLG     LG++I+ + + L L Q  Y E+IL      D  P  T L L
Subjt:  MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPARTSLTL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATCTTTGGAACAAACATGGAATTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTGAAATGAAAGACCTAGGAGAAGCAGACGTAATCCTAGGTGTTAA
AATCAGGAAAAACAAAACTAGTTTGTCCCTATGTCAAGCTCACTACGTGGAGAAAATACTAAAGAAATTTGATTCCTTTGATGTTTCTCCAGCGAGAACTTCCTTGACGC
TAGTAAACATCTTAGGAAGAATAAAGGAGATAGTGTGTCTCAACCTGAATATGCAAAGATCATAG
mRNA sequenceShow/hide mRNA sequence
GTGTGTTTATTCAAAGGTGTTTGGAGCTGATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATGGAATTAATAACTGATACTAAGTTAT
TTCTCTCATCACACTTTGAAATGAAAGACCTAGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACTAGTTTGTCCCTATGTCAAGCTCACTACGTG
GAGAAAATACTAAAGAAATTTGATTCCTTTGATGTTTCTCCAGCGAGAACTTCCTTGACGCTAGTAAACATCTTAGGAAGAATAAAGGAGATAGTGTGTCTCAACCTGAA
TATGCAAAGATCATAGGTAGT
Protein sequenceShow/hide protein sequence
MLIFGTNMELITDTKLFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQAHYVEKILKKFDSFDVSPARTSLTLVNILGRIKEIVCLNLNMQRS